Wall clock time and date at job start Tue Mar 31 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.44061 * 2 1 4 4 C 1.54891 * 110.48754 * 122.54216 * 2 1 3 5 5 C 1.54885 * 102.75098 * 156.75076 * 4 2 1 6 6 C 1.54264 * 104.31313 * 321.98986 * 5 4 2 7 7 H 1.08997 * 110.03112 * 264.38940 * 6 5 4 8 8 N 1.46908 * 110.02895 * 142.96125 * 6 5 4 9 9 C 1.46890 * 111.00127 * 55.27057 * 8 6 5 10 10 C 1.46900 * 110.99590 * 179.22365 * 8 6 5 11 11 C 1.53002 * 109.47224 * 169.99599 * 10 8 6 12 12 C 1.50693 * 109.47129 * 179.97438 * 11 10 8 13 13 O 1.21276 * 120.00427 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99674 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00498 * 0.02562 * 14 12 11 16 16 C 1.46502 * 119.99919 * 179.97438 * 14 12 11 17 17 C 1.50706 * 109.46951 * 90.00442 * 16 14 12 18 18 H 1.07997 * 119.99673 * 359.97438 * 17 16 14 19 19 C 1.37872 * 119.99951 * 180.02562 * 17 16 14 20 20 N 1.31515 * 120.00218 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00094 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47045 * 89.99843 * 21 19 17 23 23 H 1.48502 * 109.47543 * 210.00000 * 21 19 17 24 24 H 1.48506 * 109.47130 * 329.99981 * 21 19 17 25 25 C 1.54212 * 106.42947 * 23.64317 * 6 5 4 26 26 H 1.08995 * 109.47337 * 298.91771 * 1 2 3 27 27 H 1.09004 * 109.46929 * 58.91645 * 1 2 3 28 28 H 1.08999 * 109.47511 * 178.91375 * 1 2 3 29 29 H 1.09002 * 110.75813 * 38.43144 * 4 2 1 30 30 H 1.09003 * 110.91416 * 275.14162 * 4 2 1 31 31 H 1.09006 * 110.48238 * 80.73596 * 5 4 2 32 32 H 1.09004 * 110.48859 * 203.24579 * 5 4 2 33 33 H 1.09002 * 109.47443 * 65.01895 * 9 8 6 34 34 H 1.09000 * 109.47154 * 185.01219 * 9 8 6 35 35 H 1.09000 * 109.47346 * 305.01606 * 9 8 6 36 36 H 1.08999 * 109.47599 * 290.00017 * 10 8 6 37 37 H 1.09003 * 109.47442 * 50.00305 * 10 8 6 38 38 H 1.08999 * 109.47174 * 300.00678 * 11 10 8 39 39 H 1.09003 * 109.46335 * 60.00027 * 11 10 8 40 40 H 1.09004 * 109.47239 * 89.99013 * 15 14 12 41 41 H 1.08993 * 109.47641 * 210.00213 * 15 14 12 42 42 H 1.09007 * 109.46497 * 330.00046 * 15 14 12 43 43 H 1.09005 * 109.47186 * 210.00019 * 16 14 12 44 44 H 1.08995 * 109.47098 * 330.00107 * 16 14 12 45 45 H 0.97005 * 120.00222 * 180.02562 * 20 19 17 46 46 H 1.09004 * 110.00672 * 240.69022 * 25 6 5 47 47 H 1.09005 * 110.06710 * 119.30281 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7805 1.2231 5 6 3.4919 -1.1941 0.7628 6 6 3.3229 -1.5400 -0.7310 7 1 3.1776 -2.6135 -0.8515 8 7 4.5055 -1.1038 -1.4855 9 6 5.7328 -1.6792 -0.9193 10 6 4.3748 -1.4398 -2.9095 11 6 5.4941 -0.7583 -3.6992 12 6 5.3604 -1.1035 -5.1600 13 8 4.4584 -1.8233 -5.5329 14 7 6.2432 -0.6122 -6.0520 15 6 7.3332 0.2569 -5.6016 16 6 6.1136 -0.9482 -7.4721 17 6 5.2405 0.0745 -8.1526 18 1 4.8236 0.8926 -7.5840 19 6 4.9732 -0.0349 -9.5007 20 7 5.4805 -1.0314 -10.1930 21 14 3.8904 1.2323 -10.3440 22 1 4.7338 2.3429 -10.8545 23 1 3.1726 0.5948 -11.4770 24 1 2.9040 1.7667 -9.3710 25 6 2.0727 -0.7785 -1.2163 26 1 -0.3634 0.4969 0.8995 27 1 -0.3633 0.5306 -0.8801 28 1 -0.3634 -1.0274 -0.0195 29 1 1.4594 -1.6596 1.4230 30 1 2.1228 -0.1388 2.1028 31 1 4.1893 -0.3655 0.8860 32 1 3.8347 -2.0661 1.3199 33 1 5.7148 -2.7625 -1.0385 34 1 6.5991 -1.2709 -1.4397 35 1 5.7952 -1.4312 0.1402 36 1 4.4466 -2.5201 -3.0362 37 1 3.4086 -1.0943 -3.2772 38 1 5.4224 0.3220 -3.5726 39 1 6.4604 -1.1038 -3.3315 40 1 8.2025 -0.3510 -5.3503 41 1 7.5949 0.9539 -6.3976 42 1 7.0131 0.8144 -4.7212 43 1 7.0998 -0.9506 -7.9364 44 1 5.6625 -1.9354 -7.5721 45 1 5.2927 -1.1082 -11.1416 46 1 1.3220 -1.4834 -1.5737 47 1 2.3429 -0.0853 -2.0130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429580100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:05 Heat of formation + Delta-G solvation = -69.218107 kcal Electronic energy + Delta-G solvation = -22776.943777 eV Core-core repulsion = 19572.108140 eV Total energy + Delta-G solvation = -3204.835637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84751 -39.99625 -37.07231 -36.52494 -34.75273 -32.74552 -30.97235 -29.76220 -29.57154 -27.37155 -26.58634 -25.76685 -24.68800 -22.64821 -21.08292 -20.23074 -19.90618 -18.71203 -17.99776 -17.39606 -17.10435 -16.60282 -16.27050 -15.94925 -15.64131 -15.26256 -14.77934 -14.49223 -14.41586 -14.08034 -13.91209 -13.70523 -13.56262 -13.45185 -13.24200 -12.95017 -12.90242 -12.78580 -12.71729 -12.50185 -12.22297 -12.21433 -11.90970 -11.71767 -11.69369 -11.63195 -11.54043 -11.45096 -11.30778 -10.65541 -10.60840 -9.42442 -9.31585 -8.23787 -6.39041 1.35364 1.38636 1.49070 1.83426 2.28246 2.41713 2.98999 3.05605 3.59159 3.73897 3.81964 3.98869 3.99705 4.14648 4.36789 4.40244 4.43106 4.49841 4.58701 4.59555 4.64219 4.70317 4.72107 4.75696 4.81571 4.92522 4.94002 4.95945 4.99032 5.03406 5.07894 5.10271 5.12130 5.16357 5.21667 5.27743 5.35848 5.40032 5.55202 5.59181 5.83528 6.04945 6.06131 6.20644 6.68396 6.78744 7.26906 7.47967 8.83342 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.003490 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.614786 B = 8020.800633 C = 8962.127638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.110 4.110 6 C 0.076 3.924 7 H 0.030 0.970 8 N -0.534 5.534 9 C 0.015 3.985 10 C 0.078 3.922 11 C -0.114 4.114 12 C 0.493 3.507 13 O -0.602 6.602 14 N -0.611 5.611 15 C 0.078 3.922 16 C 0.258 3.742 17 C -0.544 4.544 18 H 0.053 0.947 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.273 1.273 25 C -0.119 4.119 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.019 0.981 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.019 0.981 37 H 0.062 0.938 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.024 0.976 44 H -0.004 1.004 45 H 0.268 0.732 46 H 0.055 0.945 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 3.226 25.256 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.032 4.032 7 H 0.048 0.952 8 N -0.258 5.258 9 C -0.133 4.133 10 C -0.051 4.051 11 C -0.153 4.153 12 C 0.282 3.718 13 O -0.485 6.485 14 N -0.343 5.343 15 C -0.064 4.064 16 C 0.137 3.863 17 C -0.583 4.583 18 H 0.071 0.929 19 C -0.193 4.193 20 N -0.569 5.569 21 Si 0.793 3.207 22 H -0.186 1.186 23 H -0.206 1.206 24 H -0.198 1.198 25 C -0.157 4.157 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.037 0.963 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.042 0.958 44 H 0.014 0.986 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.429 3.293 24.917 25.174 hybrid contribution -0.574 -0.762 -1.435 1.723 sum -2.002 2.532 23.482 23.703 Atomic orbital electron populations 1.21801 0.94637 1.01789 1.01883 1.21894 0.95629 0.99179 0.94231 0.90818 1.22524 0.95270 0.99954 0.97355 1.22421 0.98189 1.01855 0.92289 1.22425 0.89867 0.96174 0.94748 0.95160 1.62203 1.03310 1.59307 1.00972 1.22574 0.92176 0.96849 1.01678 1.21643 0.98502 0.96916 0.88016 1.21543 1.01670 1.03968 0.88158 1.21406 0.80987 0.79690 0.89695 1.90627 1.35238 1.40515 1.82077 1.48209 1.29231 1.48595 1.08219 1.21946 0.89016 0.94116 1.01290 1.18749 0.95851 0.94869 0.76870 1.21717 1.31252 1.10912 0.94380 0.92886 1.25891 0.97352 0.98005 0.98026 1.70056 1.46037 1.32149 1.08676 0.85391 0.78703 0.78802 0.77772 1.18614 1.20553 1.19808 1.22389 0.95841 0.98881 0.98608 0.91463 0.93368 0.92752 0.91266 0.90065 0.90106 0.90900 0.96285 0.90219 0.89301 0.96221 0.91974 0.86743 0.86655 0.91047 0.91625 0.88657 0.95833 0.98632 0.92363 0.92632 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.13 71.98 0.66 -1.56 16 2 C -0.09 -1.55 3.45 -9.72 -0.03 -1.58 16 3 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.11 -1.56 6.33 31.88 0.20 -1.36 16 5 C -0.11 -1.67 5.07 31.67 0.16 -1.51 16 6 C 0.08 1.60 2.68 45.75 0.12 1.73 16 7 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 8 N -0.53 -12.09 4.53 -892.11 -4.04 -16.13 16 9 C 0.01 0.26 9.03 127.69 1.15 1.42 16 10 C 0.08 2.31 4.03 86.30 0.35 2.65 16 11 C -0.11 -3.28 4.17 29.85 0.12 -3.15 16 12 C 0.49 21.15 7.67 87.65 0.67 21.83 16 13 O -0.60 -32.42 15.56 -3.02 -0.05 -32.47 16 14 N -0.61 -26.66 2.86 -851.12 -2.43 -29.09 16 15 C 0.08 2.35 10.24 127.77 1.31 3.66 16 16 C 0.26 14.37 5.16 85.63 0.44 14.81 16 17 C -0.54 -32.21 9.39 25.60 0.24 -31.97 16 18 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 19 C 0.01 0.36 5.46 84.65 0.46 0.82 16 20 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 21 Si 0.97 45.71 29.54 68.60 2.03 47.73 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 24 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 25 C -0.12 -2.64 5.41 31.44 0.17 -2.47 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.05 0.83 8.11 -2.39 -0.02 0.81 16 29 H 0.07 0.91 8.06 -2.39 -0.02 0.90 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.21 7.45 -2.38 -0.02 1.20 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.08 1.27 6.52 -2.39 -0.02 1.25 16 35 H 0.09 1.24 6.46 -2.39 -0.02 1.22 16 36 H 0.02 0.65 8.07 -2.39 -0.02 0.63 16 37 H 0.06 2.12 6.32 -2.39 -0.02 2.10 16 38 H 0.11 2.91 7.40 -2.39 -0.02 2.90 16 39 H 0.12 2.63 6.54 -2.39 -0.02 2.61 16 40 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 42 H 0.09 2.17 6.44 -2.38 -0.02 2.16 16 43 H 0.02 1.32 8.07 -2.38 -0.02 1.30 16 44 H 0.00 -0.29 7.42 -2.39 -0.02 -0.30 16 45 H 0.27 15.41 8.31 -92.70 -0.77 14.63 16 46 H 0.05 1.28 7.82 -2.39 -0.02 1.26 16 47 H 0.06 1.50 6.75 -2.38 -0.02 1.48 16 Total: -1.00 -74.67 365.09 2.73 -71.93 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.91 Total: 11.74 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 6.03 Total: 3.31 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -6.19 Total: -102.25 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.05 Total: -32.47 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.67 2.73 -71.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429580100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.716 kcal (2) G-P(sol) polarization free energy of solvation -74.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds