Wall clock time and date at job start Tue Mar 31 2020 06:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.33397 * 2 1 4 4 C 1.54902 * 110.37249 * 237.62798 * 2 1 3 5 5 C 1.55145 * 101.65331 * 204.10223 * 4 2 1 6 6 C 1.54318 * 103.01796 * 35.65367 * 5 4 2 7 7 C 1.53000 * 109.88709 * 218.31505 * 6 5 4 8 8 C 1.52996 * 109.89003 * 97.12086 * 6 5 4 9 9 N 1.47444 * 107.23122 * 337.71608 * 6 5 4 10 10 C 1.46905 * 110.99861 * 236.74179 * 9 6 5 11 11 C 1.53003 * 109.46932 * 190.38782 * 10 9 6 12 12 C 1.50696 * 109.47056 * 174.62259 * 11 10 9 13 13 O 1.21284 * 120.00119 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00180 * 179.97438 * 12 11 10 15 15 C 1.46504 * 120.00118 * 359.97438 * 14 12 11 16 16 C 1.46500 * 120.00251 * 180.02562 * 14 12 11 17 17 C 1.50703 * 109.47243 * 89.99763 * 16 14 12 18 18 H 1.08002 * 119.99818 * 0.02562 * 17 16 14 19 19 C 1.37871 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31518 * 120.00286 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99826 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47211 * 269.99925 * 21 19 17 23 23 H 1.48506 * 109.46964 * 150.00341 * 21 19 17 24 24 H 1.48493 * 109.47070 * 30.00240 * 21 19 17 25 25 H 1.09000 * 109.47335 * 304.21983 * 1 2 3 26 26 H 1.09002 * 109.47015 * 64.21508 * 1 2 3 27 27 H 1.08998 * 109.47109 * 184.21540 * 1 2 3 28 28 H 1.09005 * 110.99337 * 322.19163 * 4 2 1 29 29 H 1.08998 * 110.99395 * 86.00553 * 4 2 1 30 30 H 1.08997 * 110.70326 * 154.03364 * 5 4 2 31 31 H 1.09001 * 110.70494 * 277.09730 * 5 4 2 32 32 H 1.09005 * 109.47097 * 182.44294 * 7 6 5 33 33 H 1.09005 * 109.46588 * 302.43718 * 7 6 5 34 34 H 1.08994 * 109.47569 * 62.43535 * 7 6 5 35 35 H 1.08994 * 109.47466 * 302.23257 * 8 6 5 36 36 H 1.09004 * 109.47018 * 62.23208 * 8 6 5 37 37 H 1.09000 * 109.47324 * 182.22824 * 8 6 5 38 38 H 1.09000 * 109.47147 * 70.38872 * 10 9 6 39 39 H 1.08997 * 109.46950 * 310.38365 * 10 9 6 40 40 H 1.08995 * 109.47223 * 54.62369 * 11 10 9 41 41 H 1.08998 * 109.47163 * 294.62068 * 11 10 9 42 42 H 1.08994 * 109.47232 * 270.00744 * 15 14 12 43 43 H 1.09003 * 109.46516 * 29.99875 * 15 14 12 44 44 H 1.08996 * 109.47302 * 149.99988 * 15 14 12 45 45 H 1.08998 * 109.46883 * 329.99777 * 16 14 12 46 46 H 1.09002 * 109.47342 * 210.00174 * 16 14 12 47 47 H 0.96998 * 119.99549 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0693 -0.7775 -1.2265 5 6 3.4786 -1.2003 -0.7345 6 6 3.2535 -1.4800 0.7663 7 6 4.4583 -0.9916 1.5731 8 6 3.0457 -2.9790 0.9910 9 7 2.0447 -0.7396 1.1721 10 6 2.3358 0.1741 2.2850 11 6 1.0246 0.7274 2.8467 12 6 1.3135 1.5594 4.0695 13 8 2.4556 1.6967 4.4536 14 7 0.3027 2.1518 4.7358 15 6 -1.0769 1.9874 4.2709 16 6 0.5836 2.9611 5.9242 17 6 0.8169 4.3923 5.5137 18 1 0.7611 4.6711 4.4718 19 6 1.1006 5.3457 6.4684 20 7 1.1680 5.0062 7.7372 21 14 1.3891 7.1198 5.9597 22 1 2.8331 7.3265 5.6817 23 1 0.9617 8.0250 7.0566 24 1 0.6018 7.4183 4.7365 25 1 -0.3634 0.5779 0.8497 26 1 -0.3633 0.4470 -0.9254 27 1 -0.3633 -1.0249 0.0755 28 1 1.4515 -1.6503 -1.4380 29 1 2.1388 -0.1293 -2.1000 30 1 3.8119 -2.1017 -1.2488 31 1 4.1949 -0.3908 -0.8753 32 1 4.3116 -1.2313 2.6263 33 1 5.3614 -1.4831 1.2110 34 1 4.5603 0.0873 1.4568 35 1 2.1982 -3.3214 0.3973 36 1 3.9429 -3.5195 0.6890 37 1 2.8482 -3.1642 2.0468 38 1 2.9538 0.9974 1.9269 39 1 2.8676 -0.3656 3.0685 40 1 0.3674 -0.0992 3.1167 41 1 0.5388 1.3465 2.0925 42 1 -1.3193 2.7812 3.5645 43 1 -1.1819 1.0198 3.7800 44 1 -1.7557 2.0386 5.1221 45 1 1.4729 2.5767 6.4236 46 1 -0.2655 2.9124 6.6059 47 1 1.0178 4.0850 8.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452007670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:20 Heat of formation + Delta-G solvation = -39.982234 kcal Electronic energy + Delta-G solvation = -23532.228345 eV Core-core repulsion = 20328.660470 eV Total energy + Delta-G solvation = -3203.567875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.27155 -38.84306 -34.96867 -33.85477 -33.31269 -32.74169 -29.46298 -28.66789 -27.47482 -27.21369 -25.61170 -23.79624 -23.41265 -21.95685 -20.72341 -18.81570 -18.44290 -16.94679 -16.53842 -15.93913 -15.60815 -15.41738 -14.81298 -14.45130 -14.03105 -13.71981 -13.61103 -13.29734 -13.10011 -12.84083 -12.75428 -12.37914 -12.28963 -12.17036 -12.00594 -11.77809 -11.68105 -11.59409 -11.45153 -11.34074 -11.02160 -10.88354 -10.82793 -10.76313 -10.62539 -10.55208 -10.31009 -10.11485 -9.10946 -8.93315 -8.36785 -8.34580 -7.59166 -6.37220 -4.08747 3.40033 3.45056 3.47809 3.61678 3.64198 4.06743 4.42466 4.49707 4.54885 4.74618 4.98428 5.08679 5.15142 5.19849 5.20487 5.28618 5.37534 5.41865 5.49314 5.53795 5.56800 5.58970 5.60547 5.66515 5.72352 5.76739 5.79409 5.88197 5.89970 5.94396 5.99851 6.09340 6.14119 6.15046 6.21194 6.31250 6.32557 6.82541 7.05848 7.12281 7.15129 7.43136 8.06072 8.31967 8.45459 8.79587 9.05316 9.61019 11.00256 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.003781 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.295747 B = 7403.654711 C = 7518.029633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.065 3.935 3 H 0.054 0.946 4 C -0.124 4.124 5 C -0.134 4.134 6 C 0.096 3.904 7 C -0.166 4.166 8 C -0.125 4.125 9 N -0.519 5.519 10 C 0.066 3.934 11 C -0.136 4.136 12 C 0.505 3.495 13 O -0.546 6.546 14 N -0.600 5.600 15 C 0.087 3.913 16 C 0.235 3.765 17 C -0.605 4.605 18 H 0.050 0.950 19 C 0.019 3.981 20 N -0.911 5.911 21 Si 1.074 2.926 22 H -0.287 1.287 23 H -0.283 1.283 24 H -0.289 1.289 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.033 0.967 46 H 0.021 0.979 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 -14.508 -17.709 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.043 4.043 3 H 0.072 0.928 4 C -0.162 4.162 5 C -0.172 4.172 6 C 0.007 3.993 7 C -0.224 4.224 8 C -0.183 4.183 9 N -0.243 5.243 10 C -0.062 4.062 11 C -0.176 4.176 12 C 0.291 3.709 13 O -0.424 6.424 14 N -0.332 5.332 15 C -0.057 4.057 16 C 0.115 3.885 17 C -0.644 4.644 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.547 5.547 21 Si 0.902 3.098 22 H -0.214 1.214 23 H -0.209 1.209 24 H -0.216 1.216 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.051 0.949 46 H 0.038 0.962 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.323 -13.262 -16.706 21.332 hybrid contribution 0.092 -0.814 -0.880 1.203 sum -0.231 -14.076 -17.586 22.527 Atomic orbital electron populations 1.21879 0.94000 1.02445 1.01492 1.22616 0.96127 0.96089 0.89509 0.92756 1.22727 0.96056 1.00218 0.97181 1.22882 0.97378 1.01622 0.95320 1.21686 0.88931 0.95072 0.93620 1.22405 0.97386 1.01623 1.00951 1.21727 1.00898 0.93486 1.02162 1.63518 1.28249 1.26057 1.06515 1.22072 0.95650 0.94801 0.93631 1.21775 0.99618 0.99852 0.96405 1.20383 0.85312 0.80431 0.84745 1.90655 1.20923 1.62617 1.68219 1.47952 1.05739 1.49518 1.30007 1.21616 0.83873 1.00113 1.00120 1.19344 0.96347 0.90532 0.82282 1.22271 1.52925 0.93405 0.95750 0.93136 1.25811 0.93807 1.05393 0.93505 1.70771 1.46189 1.21208 1.16531 0.83472 0.76700 0.74543 0.75045 1.21378 1.20891 1.21566 0.92026 0.92685 0.91955 0.90705 0.91152 0.90874 0.91433 0.91432 0.92400 0.92075 0.92460 0.92871 0.92367 0.93884 0.89448 0.88913 0.89500 0.93242 0.92291 0.91592 0.94913 0.96162 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.23 37.16 0.34 -1.02 16 2 C 0.06 0.70 2.67 -66.19 -0.18 0.52 16 3 H 0.05 0.66 7.62 -51.93 -0.40 0.26 16 4 C -0.12 -1.10 6.49 -24.59 -0.16 -1.26 16 5 C -0.13 -1.22 6.01 -24.91 -0.15 -1.37 16 6 C 0.10 1.02 1.15 -130.61 -0.15 0.87 16 7 C -0.17 -1.88 7.14 37.16 0.27 -1.61 16 8 C -0.12 -1.19 8.71 37.16 0.32 -0.87 16 9 N -0.52 -6.24 4.47 -207.99 -0.93 -7.17 16 10 C 0.07 0.98 3.03 -3.82 -0.01 0.97 16 11 C -0.14 -2.10 3.45 -27.88 -0.10 -2.19 16 12 C 0.50 10.76 7.67 -10.99 -0.08 10.67 16 13 O -0.55 -13.99 15.49 5.55 0.09 -13.90 16 14 N -0.60 -13.14 2.86 -182.95 -0.52 -13.66 16 15 C 0.09 1.42 10.29 59.85 0.62 2.04 16 16 C 0.23 6.28 4.51 -5.19 -0.02 6.25 16 17 C -0.60 -17.74 9.39 -34.44 -0.32 -18.06 16 18 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 19 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 20 N -0.91 -28.22 13.65 55.43 0.76 -27.46 16 21 Si 1.07 26.07 29.90 -169.99 -5.08 20.98 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H 0.06 0.64 5.46 -51.93 -0.28 0.35 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 31 H 0.07 0.63 7.86 -51.93 -0.41 0.22 16 32 H 0.07 0.83 6.62 -51.93 -0.34 0.49 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.77 6.72 -51.93 -0.35 0.42 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.04 0.70 6.74 -51.93 -0.35 0.35 16 39 H 0.09 1.40 5.94 -51.93 -0.31 1.09 16 40 H 0.09 1.28 7.40 -51.93 -0.38 0.90 16 41 H 0.09 1.24 5.76 -51.93 -0.30 0.94 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 44 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 45 H 0.03 0.97 7.29 -51.93 -0.38 0.59 16 46 H 0.02 0.54 7.76 -51.93 -0.40 0.14 16 47 H 0.27 8.24 7.22 -40.82 -0.29 7.94 16 LS Contribution 358.45 15.07 5.40 5.40 Total: -1.00 -33.67 358.45 -8.37 -42.05 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.36 Total: -1.64 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 0.27 Total: -4.60 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.69 Total: -48.29 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.08 Total: 20.98 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.67 -8.37 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452007670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.063 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds