Wall clock time and date at job start Tue Mar 31 2020 06:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.33397 * 2 1 4 4 C 1.54902 * 110.37249 * 237.62798 * 2 1 3 5 5 C 1.55145 * 101.65331 * 204.10223 * 4 2 1 6 6 C 1.54318 * 103.01796 * 35.65367 * 5 4 2 7 7 C 1.53000 * 109.88709 * 218.31505 * 6 5 4 8 8 C 1.52996 * 109.89003 * 97.12086 * 6 5 4 9 9 N 1.47444 * 107.23122 * 337.71608 * 6 5 4 10 10 C 1.46905 * 110.99861 * 236.74179 * 9 6 5 11 11 C 1.53003 * 109.46932 * 190.38782 * 10 9 6 12 12 C 1.50696 * 109.47056 * 174.62259 * 11 10 9 13 13 O 1.21284 * 120.00119 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00180 * 179.97438 * 12 11 10 15 15 C 1.46504 * 120.00118 * 359.97438 * 14 12 11 16 16 C 1.46500 * 120.00251 * 180.02562 * 14 12 11 17 17 C 1.50703 * 109.47243 * 89.99763 * 16 14 12 18 18 H 1.08002 * 119.99818 * 0.02562 * 17 16 14 19 19 C 1.37871 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31518 * 120.00286 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99826 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47211 * 269.99925 * 21 19 17 23 23 H 1.48506 * 109.46964 * 150.00341 * 21 19 17 24 24 H 1.48493 * 109.47070 * 30.00240 * 21 19 17 25 25 H 1.09000 * 109.47335 * 304.21983 * 1 2 3 26 26 H 1.09002 * 109.47015 * 64.21508 * 1 2 3 27 27 H 1.08998 * 109.47109 * 184.21540 * 1 2 3 28 28 H 1.09005 * 110.99337 * 322.19163 * 4 2 1 29 29 H 1.08998 * 110.99395 * 86.00553 * 4 2 1 30 30 H 1.08997 * 110.70326 * 154.03364 * 5 4 2 31 31 H 1.09001 * 110.70494 * 277.09730 * 5 4 2 32 32 H 1.09005 * 109.47097 * 182.44294 * 7 6 5 33 33 H 1.09005 * 109.46588 * 302.43718 * 7 6 5 34 34 H 1.08994 * 109.47569 * 62.43535 * 7 6 5 35 35 H 1.08994 * 109.47466 * 302.23257 * 8 6 5 36 36 H 1.09004 * 109.47018 * 62.23208 * 8 6 5 37 37 H 1.09000 * 109.47324 * 182.22824 * 8 6 5 38 38 H 1.09000 * 109.47147 * 70.38872 * 10 9 6 39 39 H 1.08997 * 109.46950 * 310.38365 * 10 9 6 40 40 H 1.08995 * 109.47223 * 54.62369 * 11 10 9 41 41 H 1.08998 * 109.47163 * 294.62068 * 11 10 9 42 42 H 1.08994 * 109.47232 * 270.00744 * 15 14 12 43 43 H 1.09003 * 109.46516 * 29.99875 * 15 14 12 44 44 H 1.08996 * 109.47302 * 149.99988 * 15 14 12 45 45 H 1.08998 * 109.46883 * 329.99777 * 16 14 12 46 46 H 1.09002 * 109.47342 * 210.00174 * 16 14 12 47 47 H 0.96998 * 119.99549 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0693 -0.7775 -1.2265 5 6 3.4786 -1.2003 -0.7345 6 6 3.2535 -1.4800 0.7663 7 6 4.4583 -0.9916 1.5731 8 6 3.0457 -2.9790 0.9910 9 7 2.0447 -0.7396 1.1721 10 6 2.3358 0.1741 2.2850 11 6 1.0246 0.7274 2.8467 12 6 1.3135 1.5594 4.0695 13 8 2.4556 1.6967 4.4536 14 7 0.3027 2.1518 4.7358 15 6 -1.0769 1.9874 4.2709 16 6 0.5836 2.9611 5.9242 17 6 0.8169 4.3923 5.5137 18 1 0.7611 4.6711 4.4718 19 6 1.1006 5.3457 6.4684 20 7 1.1680 5.0062 7.7372 21 14 1.3891 7.1198 5.9597 22 1 2.8331 7.3265 5.6817 23 1 0.9617 8.0250 7.0566 24 1 0.6018 7.4183 4.7365 25 1 -0.3634 0.5779 0.8497 26 1 -0.3633 0.4470 -0.9254 27 1 -0.3633 -1.0249 0.0755 28 1 1.4515 -1.6503 -1.4380 29 1 2.1388 -0.1293 -2.1000 30 1 3.8119 -2.1017 -1.2488 31 1 4.1949 -0.3908 -0.8753 32 1 4.3116 -1.2313 2.6263 33 1 5.3614 -1.4831 1.2110 34 1 4.5603 0.0873 1.4568 35 1 2.1982 -3.3214 0.3973 36 1 3.9429 -3.5195 0.6890 37 1 2.8482 -3.1642 2.0468 38 1 2.9538 0.9974 1.9269 39 1 2.8676 -0.3656 3.0685 40 1 0.3674 -0.0992 3.1167 41 1 0.5388 1.3465 2.0925 42 1 -1.3193 2.7812 3.5645 43 1 -1.1819 1.0198 3.7800 44 1 -1.7557 2.0386 5.1221 45 1 1.4729 2.5767 6.4236 46 1 -0.2655 2.9124 6.6059 47 1 1.0178 4.0850 8.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452007670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:20 Heat of formation + Delta-G solvation = -61.947727 kcal Electronic energy + Delta-G solvation = -23533.180840 eV Core-core repulsion = 20328.660470 eV Total energy + Delta-G solvation = -3204.520370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32267 -40.41791 -36.83646 -35.11567 -34.67152 -34.22938 -30.78555 -29.50098 -28.97736 -28.30905 -27.25260 -25.37436 -24.50287 -23.44191 -21.57826 -20.14695 -19.73099 -19.06474 -17.94968 -17.22587 -16.90873 -16.72477 -16.15894 -15.79364 -15.63758 -15.05796 -14.71852 -14.46742 -14.32269 -14.08896 -13.85217 -13.78229 -13.58811 -13.45638 -13.31117 -13.07421 -12.94302 -12.82305 -12.69563 -12.56213 -12.42818 -12.34529 -12.04891 -11.95862 -11.74058 -11.51894 -11.42247 -11.30210 -11.22335 -10.69612 -10.64586 -9.50043 -9.33235 -8.72302 -6.48157 1.47039 1.56627 1.72300 1.75210 2.20405 2.51414 2.89839 3.07286 3.55321 3.67856 3.80104 3.90389 4.02579 4.10752 4.20926 4.28234 4.30138 4.38948 4.49518 4.55017 4.59061 4.65641 4.68325 4.74013 4.78394 4.81706 4.86537 4.89568 4.93395 4.93569 4.97466 5.00803 5.03719 5.16127 5.20465 5.26093 5.34166 5.49800 5.50775 5.52589 5.79232 6.10283 6.11258 6.15498 6.41925 6.64083 7.25575 7.38220 8.62608 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.003781 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.295747 B = 7403.654711 C = 7518.029633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.056 3.944 3 H 0.038 0.962 4 C -0.116 4.116 5 C -0.131 4.131 6 C 0.089 3.911 7 C -0.163 4.163 8 C -0.120 4.120 9 N -0.515 5.515 10 C 0.078 3.922 11 C -0.115 4.115 12 C 0.494 3.506 13 O -0.601 6.601 14 N -0.608 5.608 15 C 0.081 3.919 16 C 0.244 3.756 17 C -0.618 4.618 18 H 0.044 0.956 19 C -0.032 4.032 20 N -0.931 5.931 21 Si 1.121 2.879 22 H -0.281 1.281 23 H -0.274 1.274 24 H -0.267 1.267 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.019 0.981 39 H 0.068 0.932 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.070 0.930 45 H -0.009 1.009 46 H 0.020 0.980 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.187 -15.223 -20.515 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.052 4.052 3 H 0.056 0.944 4 C -0.154 4.154 5 C -0.169 4.169 6 C 0.000 4.000 7 C -0.221 4.221 8 C -0.177 4.177 9 N -0.240 5.240 10 C -0.051 4.051 11 C -0.155 4.155 12 C 0.284 3.716 13 O -0.482 6.482 14 N -0.339 5.339 15 C -0.061 4.061 16 C 0.122 3.878 17 C -0.656 4.656 18 H 0.062 0.938 19 C -0.230 4.230 20 N -0.568 5.568 21 Si 0.942 3.058 22 H -0.207 1.207 23 H -0.199 1.199 24 H -0.191 1.191 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.125 0.875 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.089 0.911 45 H 0.009 0.991 46 H 0.038 0.962 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.675 -14.017 -19.543 24.108 hybrid contribution 0.515 -0.657 -0.006 0.835 sum -1.160 -14.674 -19.549 24.471 Atomic orbital electron populations 1.21854 0.92776 1.02796 1.02027 1.22756 0.97098 0.95436 0.89870 0.94425 1.22720 0.95625 1.00535 0.96557 1.22875 0.97678 1.02354 0.94008 1.21852 0.87887 0.95608 0.94640 1.22366 0.98932 1.00519 1.00249 1.21688 1.02019 0.92512 1.01524 1.63590 1.28873 1.25119 1.06391 1.21828 0.94738 0.94296 0.94236 1.21701 1.00447 0.99710 0.93660 1.21466 0.84323 0.80126 0.85732 1.90624 1.23250 1.64503 1.69870 1.48041 1.08404 1.48696 1.28751 1.21932 0.80628 1.02805 1.00735 1.18906 0.94477 0.90213 0.84200 1.22555 1.52806 0.94794 0.95433 0.93802 1.27393 0.92788 1.09796 0.93014 1.70897 1.47804 1.20540 1.17565 0.82893 0.77243 0.69777 0.75881 1.20705 1.19859 1.19135 0.92691 0.91169 0.91417 0.89548 0.89882 0.88950 0.92005 0.93162 0.90649 0.94037 0.91677 0.91260 0.93653 0.96253 0.91363 0.86282 0.87509 0.92449 0.87987 0.91108 0.99051 0.96227 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.23 71.98 0.66 -1.56 16 2 C 0.06 1.10 2.67 45.39 0.12 1.22 16 3 H 0.04 0.87 7.62 -2.39 -0.02 0.85 16 4 C -0.12 -1.72 6.49 31.98 0.21 -1.51 16 5 C -0.13 -2.08 6.01 31.78 0.19 -1.89 16 6 C 0.09 1.78 1.15 3.87 0.00 1.78 16 7 C -0.16 -3.74 7.14 71.98 0.51 -3.22 16 8 C -0.12 -2.04 8.71 71.98 0.63 -1.41 16 9 N -0.52 -11.71 4.47 -811.94 -3.63 -15.34 16 10 C 0.08 2.32 3.03 86.30 0.26 2.58 16 11 C -0.12 -3.43 3.45 29.85 0.10 -3.33 16 12 C 0.49 21.42 7.67 87.66 0.67 22.09 16 13 O -0.60 -32.37 15.49 -3.04 -0.05 -32.41 16 14 N -0.61 -26.76 2.86 -851.13 -2.43 -29.19 16 15 C 0.08 2.49 10.29 127.77 1.31 3.80 16 16 C 0.24 13.51 4.51 85.63 0.39 13.90 16 17 C -0.62 -36.94 9.39 25.60 0.24 -36.69 16 18 H 0.04 2.62 7.81 -2.91 -0.02 2.60 16 19 C -0.03 -1.90 5.46 84.65 0.46 -1.44 16 20 N -0.93 -59.02 13.65 21.45 0.29 -58.73 16 21 Si 1.12 52.22 29.90 68.60 2.05 54.27 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 25 H 0.05 0.95 5.46 -2.39 -0.01 0.94 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.11 8.06 -2.38 -0.02 1.10 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.14 7.83 -2.39 -0.02 1.12 16 31 H 0.06 1.06 7.86 -2.39 -0.02 1.04 16 32 H 0.05 1.31 6.62 -2.38 -0.02 1.29 16 33 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 34 H 0.04 1.09 6.72 -2.39 -0.02 1.08 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 38 H 0.02 0.66 6.74 -2.39 -0.02 0.64 16 39 H 0.07 2.29 5.94 -2.39 -0.01 2.28 16 40 H 0.12 2.95 7.40 -2.39 -0.02 2.94 16 41 H 0.11 2.81 5.76 -2.39 -0.01 2.79 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 43 H 0.10 2.25 6.44 -2.39 -0.02 2.24 16 44 H 0.07 2.11 7.89 -2.39 -0.02 2.09 16 45 H -0.01 -0.54 7.29 -2.39 -0.02 -0.56 16 46 H 0.02 1.08 7.76 -2.39 -0.02 1.06 16 47 H 0.26 16.37 7.22 -92.71 -0.67 15.70 16 Total: -1.00 -76.30 358.45 3.03 -73.27 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.02 Total: 13.81 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.77 Total: -5.67 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -5.76 Total: -103.26 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.05 Total: -32.41 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 2.05 Total: 54.27 kcal Total: -76.30 3.03 -73.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452007670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.319 kcal (2) G-P(sol) polarization free energy of solvation -76.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds