Wall clock time and date at job start Tue Mar 31 2020 06:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 110.32799 * 2 1 4 4 C 1.54905 * 110.37327 * 122.25378 * 2 1 3 5 5 C 1.55261 * 101.59570 * 155.81547 * 4 2 1 6 6 C 1.54318 * 103.08727 * 324.49200 * 5 4 2 7 7 C 1.53002 * 109.88689 * 262.79834 * 6 5 4 8 8 C 1.52998 * 110.02258 * 141.68772 * 6 5 4 9 9 N 1.47441 * 107.23533 * 22.20326 * 6 5 4 10 10 C 1.46894 * 111.00139 * 123.25938 * 9 6 5 11 11 C 1.53000 * 109.47290 * 173.84928 * 10 9 6 12 12 C 1.50705 * 109.47103 * 185.55195 * 11 10 9 13 13 O 1.21280 * 119.99896 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99707 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00429 * 0.02562 * 14 12 11 16 16 C 1.46498 * 119.99673 * 179.97438 * 14 12 11 17 17 C 1.50703 * 109.47187 * 90.00239 * 16 14 12 18 18 H 1.07995 * 119.99880 * 359.97438 * 17 16 14 19 19 C 1.37881 * 120.00367 * 180.02562 * 17 16 14 20 20 N 1.31508 * 119.99917 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99645 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46897 * 90.00274 * 21 19 17 23 23 H 1.48500 * 109.46798 * 210.00177 * 21 19 17 24 24 H 1.48496 * 109.47127 * 330.00396 * 21 19 17 25 25 H 1.08998 * 109.46961 * 180.70043 * 1 2 3 26 26 H 1.09000 * 109.46749 * 60.69738 * 1 2 3 27 27 H 1.09000 * 109.47283 * 300.70125 * 1 2 3 28 28 H 1.09001 * 110.99229 * 273.99074 * 4 2 1 29 29 H 1.09005 * 110.98700 * 37.80762 * 4 2 1 30 30 H 1.09002 * 110.73794 * 206.05474 * 5 4 2 31 31 H 1.08995 * 110.75476 * 82.93407 * 5 4 2 32 32 H 1.08998 * 109.47238 * 177.76685 * 7 6 5 33 33 H 1.08998 * 109.47010 * 297.77394 * 7 6 5 34 34 H 1.09008 * 109.47186 * 57.76854 * 7 6 5 35 35 H 1.09001 * 109.46816 * 297.57366 * 8 6 5 36 36 H 1.09000 * 109.47161 * 57.57594 * 8 6 5 37 37 H 1.09004 * 109.46789 * 177.57409 * 8 6 5 38 38 H 1.09008 * 109.46924 * 293.84799 * 10 9 6 39 39 H 1.08996 * 109.47448 * 53.84545 * 10 9 6 40 40 H 1.08996 * 109.47028 * 305.55036 * 11 10 9 41 41 H 1.08998 * 109.47044 * 65.54941 * 11 10 9 42 42 H 1.08997 * 109.47235 * 89.99835 * 15 14 12 43 43 H 1.08998 * 109.47224 * 210.00235 * 15 14 12 44 44 H 1.09004 * 109.46998 * 330.00025 * 15 14 12 45 45 H 1.09007 * 109.47221 * 209.99992 * 16 14 12 46 46 H 1.09003 * 109.47415 * 330.00017 * 16 14 12 47 47 H 0.97003 * 119.99704 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0222 0.0000 4 6 2.0694 -0.7750 1.2281 5 6 3.4786 -1.2003 0.7345 6 6 3.2536 -1.4798 -0.7664 7 6 3.0458 -2.9789 -0.9911 8 6 4.4576 -0.9943 -1.5760 9 7 2.0448 -0.7396 -1.1722 10 6 2.3357 0.1741 -2.2850 11 6 1.0336 0.8084 -2.7780 12 6 1.3122 1.6390 -4.0042 13 8 2.4411 1.7165 -4.4405 14 7 0.3067 2.2957 -4.6159 15 6 -1.0569 2.2026 -4.0885 16 6 0.5776 3.1037 -5.8075 17 6 0.4309 2.2474 -7.0390 18 1 0.1630 1.2056 -6.9434 19 6 0.6395 2.7939 -8.2876 20 7 0.5119 2.0465 -9.3621 21 14 1.1035 4.5958 -8.4527 22 1 2.5820 4.7313 -8.4196 23 1 0.5867 5.1239 -9.7408 24 1 0.5108 5.3646 -7.3290 25 1 -0.3633 -1.0276 0.0126 26 1 -0.3633 0.5030 -0.8962 27 1 -0.3634 0.5247 0.8836 28 1 2.1389 -0.1249 2.1003 29 1 1.4515 -1.6473 1.4414 30 1 3.8119 -2.1017 1.2487 31 1 4.1965 -0.3918 0.8725 32 1 2.8482 -3.1641 -2.0469 33 1 3.9429 -3.5193 -0.6891 34 1 2.1982 -3.3214 -0.3974 35 1 4.5616 0.0846 -1.4609 36 1 5.3605 -1.4869 -1.2152 37 1 4.3084 -1.2347 -2.6287 38 1 3.0148 0.9561 -1.9449 39 1 2.8003 -0.3816 -3.0994 40 1 0.3183 0.0240 -3.0253 41 1 0.6197 1.4437 -1.9950 42 1 -1.2212 2.9995 -3.3632 43 1 -1.7704 2.3029 -4.9064 44 1 -1.1936 1.2360 -3.6036 45 1 -0.1302 3.9313 -5.8540 46 1 1.5932 3.4965 -5.7570 47 1 0.6584 2.4311 -10.2405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452007672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:23 Heat of formation + Delta-G solvation = -32.105494 kcal Electronic energy + Delta-G solvation = -23521.983973 eV Core-core repulsion = 20318.757659 eV Total energy + Delta-G solvation = -3203.226314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.26937 -38.85514 -34.93109 -33.87250 -33.27238 -32.47557 -29.67447 -28.70466 -27.94874 -27.39268 -25.83669 -23.80235 -23.36330 -21.60220 -20.66308 -18.80273 -18.28059 -16.94004 -16.59299 -15.94112 -15.56786 -15.38210 -15.00535 -14.48711 -14.13122 -13.80622 -13.49435 -13.38014 -12.98105 -12.86510 -12.67227 -12.38384 -12.32615 -12.17140 -12.00673 -11.88467 -11.71786 -11.61180 -11.48299 -11.41414 -11.03575 -10.90050 -10.78769 -10.75074 -10.62347 -10.49641 -10.34688 -10.12494 -9.51875 -8.94217 -8.57038 -8.31153 -7.66445 -6.06695 -4.05193 3.30322 3.36265 3.38007 3.40479 3.63882 4.05551 4.41234 4.43867 4.50209 4.75214 4.98913 5.10666 5.15855 5.18974 5.20813 5.27192 5.30405 5.39513 5.50353 5.55446 5.58528 5.61324 5.63417 5.66660 5.73990 5.77750 5.82380 5.87573 5.90044 5.96823 5.99673 6.12843 6.15256 6.20002 6.23410 6.32860 6.34981 6.72598 6.96483 7.08556 7.14610 7.37499 7.63499 8.29218 8.49680 8.95773 9.03223 9.53775 11.06796 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026938 B = 0.003840 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.169539 B = 7289.087035 C = 7729.644761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.065 3.935 3 H 0.053 0.947 4 C -0.124 4.124 5 C -0.133 4.133 6 C 0.097 3.903 7 C -0.126 4.126 8 C -0.166 4.166 9 N -0.518 5.518 10 C 0.067 3.933 11 C -0.137 4.137 12 C 0.507 3.493 13 O -0.545 6.545 14 N -0.599 5.599 15 C 0.084 3.916 16 C 0.215 3.785 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.877 3.123 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.029 0.971 46 H 0.036 0.964 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.004 -5.442 22.595 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.043 4.043 3 H 0.071 0.929 4 C -0.162 4.162 5 C -0.172 4.172 6 C 0.007 3.993 7 C -0.184 4.184 8 C -0.224 4.224 9 N -0.243 5.243 10 C -0.061 4.061 11 C -0.177 4.177 12 C 0.293 3.707 13 O -0.423 6.423 14 N -0.331 5.331 15 C -0.060 4.060 16 C 0.094 3.906 17 C -0.566 4.566 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.224 -5.726 21.957 22.724 hybrid contribution 0.695 1.492 -0.092 1.648 sum 1.919 -4.234 21.865 22.354 Atomic orbital electron populations 1.21904 0.93989 1.02430 1.01641 1.22596 0.96123 0.95985 0.89593 0.92916 1.22750 0.96095 1.00232 0.97115 1.22899 0.97314 1.01587 0.95379 1.21683 0.88917 0.95157 0.93507 1.21742 1.00870 0.93439 1.02344 1.22400 0.97380 1.01470 1.01147 1.63530 1.28314 1.26011 1.06430 1.22063 0.95456 0.94646 0.93907 1.21800 0.99911 0.99727 0.96309 1.20391 0.85132 0.80317 0.84833 1.90655 1.22035 1.63066 1.66516 1.47833 1.07120 1.48986 1.29161 1.21657 0.84601 1.00447 0.99321 1.19649 0.96974 0.90963 0.82978 1.21345 1.47782 0.98427 0.89083 0.90767 1.24863 0.94680 0.97852 0.95652 1.69901 1.49687 1.36039 0.98031 0.86844 0.79520 0.85590 0.77686 1.19932 1.21070 1.19104 0.92002 0.91797 0.92777 0.91193 0.90680 0.90871 0.91520 0.92211 0.92886 0.92470 0.92169 0.92420 0.91281 0.94020 0.89297 0.88535 0.89648 0.93800 0.90644 0.92003 0.95338 0.94647 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.24 37.16 0.34 -0.97 16 2 C 0.07 0.67 2.54 -66.18 -0.17 0.50 16 3 H 0.05 0.58 7.69 -51.93 -0.40 0.18 16 4 C -0.12 -1.06 6.51 -24.53 -0.16 -1.22 16 5 C -0.13 -1.19 6.02 -24.84 -0.15 -1.34 16 6 C 0.10 1.03 1.16 -130.61 -0.15 0.88 16 7 C -0.13 -1.26 8.70 37.16 0.32 -0.94 16 8 C -0.17 -1.88 7.15 37.16 0.27 -1.61 16 9 N -0.52 -6.21 4.50 -207.98 -0.94 -7.15 16 10 C 0.07 0.98 3.03 -3.83 -0.01 0.96 16 11 C -0.14 -2.05 3.08 -27.88 -0.09 -2.14 16 12 C 0.51 10.44 7.67 -10.98 -0.08 10.36 16 13 O -0.54 -13.51 15.49 5.56 0.09 -13.42 16 14 N -0.60 -12.56 2.86 -182.95 -0.52 -13.08 16 15 C 0.08 1.30 10.24 59.84 0.61 1.92 16 16 C 0.22 5.37 4.23 -5.19 -0.02 5.35 16 17 C -0.53 -15.44 9.94 -34.44 -0.34 -15.78 16 18 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 19 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 21 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 22 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.62 5.35 -51.93 -0.28 0.34 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.62 8.06 -51.93 -0.42 0.21 16 30 H 0.07 0.57 7.83 -51.93 -0.41 0.16 16 31 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 35 H 0.06 0.73 6.61 -51.93 -0.34 0.38 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.88 6.70 -51.93 -0.35 0.53 16 38 H 0.04 0.63 6.61 -51.92 -0.34 0.29 16 39 H 0.09 1.47 6.21 -51.93 -0.32 1.15 16 40 H 0.10 1.39 7.39 -51.93 -0.38 1.01 16 41 H 0.09 1.09 5.96 -51.93 -0.31 0.78 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 45 H 0.03 0.68 7.13 -51.92 -0.37 0.31 16 46 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -33.57 356.24 -8.04 -41.61 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -8.41 Total: -1.24 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 0.27 Total: -2.01 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.68 Total: -47.49 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.09 Total: -13.42 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.57 -8.04 -41.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452007672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.502 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds