Wall clock time and date at job start Tue Mar 31 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 110.32799 * 2 1 4 4 C 1.54905 * 110.37327 * 122.25378 * 2 1 3 5 5 C 1.55261 * 101.59570 * 155.81547 * 4 2 1 6 6 C 1.54318 * 103.08727 * 324.49200 * 5 4 2 7 7 C 1.53002 * 109.88689 * 262.79834 * 6 5 4 8 8 C 1.52998 * 110.02258 * 141.68772 * 6 5 4 9 9 N 1.47441 * 107.23533 * 22.20326 * 6 5 4 10 10 C 1.46894 * 111.00139 * 123.25938 * 9 6 5 11 11 C 1.53000 * 109.47290 * 173.84928 * 10 9 6 12 12 C 1.50705 * 109.47103 * 185.55195 * 11 10 9 13 13 O 1.21280 * 119.99896 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99707 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00429 * 0.02562 * 14 12 11 16 16 C 1.46498 * 119.99673 * 179.97438 * 14 12 11 17 17 C 1.50703 * 109.47187 * 90.00239 * 16 14 12 18 18 H 1.07995 * 119.99880 * 359.97438 * 17 16 14 19 19 C 1.37881 * 120.00367 * 180.02562 * 17 16 14 20 20 N 1.31508 * 119.99917 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99645 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46897 * 90.00274 * 21 19 17 23 23 H 1.48500 * 109.46798 * 210.00177 * 21 19 17 24 24 H 1.48496 * 109.47127 * 330.00396 * 21 19 17 25 25 H 1.08998 * 109.46961 * 180.70043 * 1 2 3 26 26 H 1.09000 * 109.46749 * 60.69738 * 1 2 3 27 27 H 1.09000 * 109.47283 * 300.70125 * 1 2 3 28 28 H 1.09001 * 110.99229 * 273.99074 * 4 2 1 29 29 H 1.09005 * 110.98700 * 37.80762 * 4 2 1 30 30 H 1.09002 * 110.73794 * 206.05474 * 5 4 2 31 31 H 1.08995 * 110.75476 * 82.93407 * 5 4 2 32 32 H 1.08998 * 109.47238 * 177.76685 * 7 6 5 33 33 H 1.08998 * 109.47010 * 297.77394 * 7 6 5 34 34 H 1.09008 * 109.47186 * 57.76854 * 7 6 5 35 35 H 1.09001 * 109.46816 * 297.57366 * 8 6 5 36 36 H 1.09000 * 109.47161 * 57.57594 * 8 6 5 37 37 H 1.09004 * 109.46789 * 177.57409 * 8 6 5 38 38 H 1.09008 * 109.46924 * 293.84799 * 10 9 6 39 39 H 1.08996 * 109.47448 * 53.84545 * 10 9 6 40 40 H 1.08996 * 109.47028 * 305.55036 * 11 10 9 41 41 H 1.08998 * 109.47044 * 65.54941 * 11 10 9 42 42 H 1.08997 * 109.47235 * 89.99835 * 15 14 12 43 43 H 1.08998 * 109.47224 * 210.00235 * 15 14 12 44 44 H 1.09004 * 109.46998 * 330.00025 * 15 14 12 45 45 H 1.09007 * 109.47221 * 209.99992 * 16 14 12 46 46 H 1.09003 * 109.47415 * 330.00017 * 16 14 12 47 47 H 0.97003 * 119.99704 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0222 0.0000 4 6 2.0694 -0.7750 1.2281 5 6 3.4786 -1.2003 0.7345 6 6 3.2536 -1.4798 -0.7664 7 6 3.0458 -2.9789 -0.9911 8 6 4.4576 -0.9943 -1.5760 9 7 2.0448 -0.7396 -1.1722 10 6 2.3357 0.1741 -2.2850 11 6 1.0336 0.8084 -2.7780 12 6 1.3122 1.6390 -4.0042 13 8 2.4411 1.7165 -4.4405 14 7 0.3067 2.2957 -4.6159 15 6 -1.0569 2.2026 -4.0885 16 6 0.5776 3.1037 -5.8075 17 6 0.4309 2.2474 -7.0390 18 1 0.1630 1.2056 -6.9434 19 6 0.6395 2.7939 -8.2876 20 7 0.5119 2.0465 -9.3621 21 14 1.1035 4.5958 -8.4527 22 1 2.5820 4.7313 -8.4196 23 1 0.5867 5.1239 -9.7408 24 1 0.5108 5.3646 -7.3290 25 1 -0.3633 -1.0276 0.0126 26 1 -0.3633 0.5030 -0.8962 27 1 -0.3634 0.5247 0.8836 28 1 2.1389 -0.1249 2.1003 29 1 1.4515 -1.6473 1.4414 30 1 3.8119 -2.1017 1.2487 31 1 4.1965 -0.3918 0.8725 32 1 2.8482 -3.1641 -2.0469 33 1 3.9429 -3.5193 -0.6891 34 1 2.1982 -3.3214 -0.3974 35 1 4.5616 0.0846 -1.4609 36 1 5.3605 -1.4869 -1.2152 37 1 4.3084 -1.2347 -2.6287 38 1 3.0148 0.9561 -1.9449 39 1 2.8003 -0.3816 -3.0994 40 1 0.3183 0.0240 -3.0253 41 1 0.6197 1.4437 -1.9950 42 1 -1.2212 2.9995 -3.3632 43 1 -1.7704 2.3029 -4.9064 44 1 -1.1936 1.2360 -3.6036 45 1 -0.1302 3.9313 -5.8540 46 1 1.5932 3.4965 -5.7570 47 1 0.6584 2.4311 -10.2405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452007672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:22 Heat of formation + Delta-G solvation = -54.872443 kcal Electronic energy + Delta-G solvation = -23522.971222 eV Core-core repulsion = 20318.757659 eV Total energy + Delta-G solvation = -3204.213563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29047 -40.35795 -36.67400 -34.95324 -34.58985 -34.17362 -31.18637 -29.65911 -29.33052 -28.28945 -27.32931 -25.10082 -24.45213 -23.12994 -21.51519 -19.92778 -19.65531 -19.16064 -17.91911 -17.17853 -16.89199 -16.75916 -16.27269 -16.05382 -15.38231 -14.93480 -14.74468 -14.45473 -14.30206 -14.08150 -13.88573 -13.72233 -13.63608 -13.43783 -13.24808 -13.04903 -12.89749 -12.78097 -12.64040 -12.52514 -12.38807 -12.30337 -12.07927 -11.96241 -11.75926 -11.70189 -11.48547 -11.40499 -11.30654 -10.84599 -10.63298 -9.40176 -9.26253 -8.35279 -6.40627 1.31385 1.35730 1.44347 1.78810 2.27948 2.30147 2.94001 2.99209 3.58953 3.71577 3.86450 3.93665 4.06024 4.12643 4.23869 4.30658 4.37412 4.42968 4.54154 4.57350 4.65832 4.67894 4.74547 4.80380 4.81535 4.85223 4.92506 4.96225 4.96719 4.98122 4.99425 5.03102 5.07333 5.18002 5.22917 5.28885 5.36660 5.44703 5.51049 5.54218 5.61493 6.15180 6.20698 6.22931 6.60662 6.69242 7.20053 7.41270 8.81892 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026938 B = 0.003840 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.169539 B = 7289.087035 C = 7729.644761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.058 3.942 3 H 0.046 0.954 4 C -0.117 4.117 5 C -0.129 4.129 6 C 0.090 3.910 7 C -0.122 4.122 8 C -0.162 4.162 9 N -0.521 5.521 10 C 0.078 3.922 11 C -0.118 4.118 12 C 0.495 3.505 13 O -0.598 6.598 14 N -0.608 5.608 15 C 0.077 3.923 16 C 0.223 3.777 17 C -0.538 4.538 18 H 0.027 0.973 19 C 0.010 3.990 20 N -0.946 5.946 21 Si 0.950 3.050 22 H -0.277 1.277 23 H -0.273 1.273 24 H -0.237 1.237 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.030 0.970 39 H 0.058 0.942 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.051 0.949 46 H 0.017 0.983 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 -4.416 25.593 25.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.050 4.050 3 H 0.064 0.936 4 C -0.155 4.155 5 C -0.168 4.168 6 C 0.001 3.999 7 C -0.180 4.180 8 C -0.220 4.220 9 N -0.246 5.246 10 C -0.050 4.050 11 C -0.157 4.157 12 C 0.284 3.716 13 O -0.480 6.480 14 N -0.339 5.339 15 C -0.065 4.065 16 C 0.100 3.900 17 C -0.577 4.577 18 H 0.045 0.955 19 C -0.188 4.188 20 N -0.586 5.586 21 Si 0.772 3.228 22 H -0.203 1.203 23 H -0.198 1.198 24 H -0.160 1.160 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.069 0.931 46 H 0.035 0.965 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.233 -4.714 25.001 25.443 hybrid contribution 0.983 1.052 -1.024 1.767 sum 1.216 -3.661 23.978 24.286 Atomic orbital electron populations 1.21887 0.92910 1.02599 1.02284 1.22748 0.96967 0.95739 0.89544 0.93550 1.22746 0.95493 1.00510 0.96735 1.22878 0.97811 1.02378 0.93683 1.21825 0.87986 0.95310 0.94826 1.21713 1.01931 0.93108 1.01240 1.22353 0.98824 1.00843 1.00017 1.63570 1.28963 1.25447 1.06628 1.21805 0.94786 0.94306 0.94119 1.21730 1.00372 0.99390 0.94250 1.21401 0.84273 0.79948 0.85934 1.90622 1.24274 1.64772 1.68285 1.47976 1.09523 1.48398 1.28013 1.21977 0.81251 1.03483 0.99791 1.19332 0.96469 0.91249 0.82923 1.21577 1.47656 0.96960 0.91469 0.95503 1.25880 0.94357 1.03496 0.95042 1.70054 1.51023 1.38673 0.98833 0.85689 0.78914 0.79130 0.79043 1.20263 1.19832 1.16031 0.92107 0.92287 0.90921 0.89526 0.90000 0.89229 0.91589 0.94136 0.91269 0.91809 0.93387 0.90729 0.93645 0.95180 0.92340 0.87461 0.86452 0.90072 0.91594 0.89338 0.93096 0.96477 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.24 71.98 0.67 -1.46 16 2 C 0.06 1.05 2.54 45.39 0.12 1.16 16 3 H 0.05 0.92 7.69 -2.38 -0.02 0.90 16 4 C -0.12 -1.63 6.51 32.02 0.21 -1.42 16 5 C -0.13 -1.99 6.02 31.82 0.19 -1.80 16 6 C 0.09 1.83 1.16 3.87 0.00 1.83 16 7 C -0.12 -2.31 8.70 71.98 0.63 -1.68 16 8 C -0.16 -3.76 7.15 71.98 0.52 -3.25 16 9 N -0.52 -11.98 4.50 -811.92 -3.65 -15.63 16 10 C 0.08 2.31 3.03 86.30 0.26 2.57 16 11 C -0.12 -3.41 3.08 29.85 0.09 -3.32 16 12 C 0.50 20.63 7.67 87.66 0.67 21.30 16 13 O -0.60 -30.92 15.49 -3.03 -0.05 -30.97 16 14 N -0.61 -25.22 2.86 -851.13 -2.43 -27.65 16 15 C 0.08 2.21 10.24 127.77 1.31 3.52 16 16 C 0.22 11.12 4.23 85.63 0.36 11.48 16 17 C -0.54 -32.48 9.94 25.60 0.25 -32.22 16 18 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 19 C 0.01 0.61 5.47 84.66 0.46 1.07 16 20 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 21 Si 0.95 45.16 27.47 68.60 1.88 47.05 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.94 5.35 -2.39 -0.01 0.93 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.06 8.06 -2.38 -0.02 1.04 16 30 H 0.09 1.11 7.83 -2.39 -0.02 1.09 16 31 H 0.07 1.04 7.85 -2.39 -0.02 1.02 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.05 1.20 6.61 -2.39 -0.02 1.19 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.04 1.24 6.70 -2.38 -0.02 1.23 16 38 H 0.03 0.94 6.61 -2.38 -0.02 0.93 16 39 H 0.06 2.07 6.21 -2.39 -0.01 2.06 16 40 H 0.11 2.93 7.39 -2.39 -0.02 2.91 16 41 H 0.12 2.68 5.96 -2.39 -0.01 2.66 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 2.03 8.07 -2.39 -0.02 2.02 16 44 H 0.09 2.06 6.44 -2.39 -0.02 2.04 16 45 H 0.05 2.31 7.13 -2.38 -0.02 2.30 16 46 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 47 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -77.15 356.24 2.66 -74.49 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.87 Total: 15.45 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 5.74 Total: -2.20 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -5.78 Total: -103.82 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.05 Total: -30.97 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -77.15 2.66 -74.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452007672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.618 kcal (2) G-P(sol) polarization free energy of solvation -77.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds