Wall clock time and date at job start Tue Mar 31 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47099 * 2 1 4 4 N 1.46497 * 109.47149 * 239.99836 * 2 1 3 5 5 C 1.34781 * 120.00103 * 85.00228 * 4 2 1 6 6 O 1.21593 * 119.99684 * 359.97438 * 5 4 2 7 7 N 1.34770 * 120.00528 * 180.02562 * 5 4 2 8 8 C 1.46493 * 120.00393 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47400 * 179.97438 * 8 7 5 10 10 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.53003 * 109.47332 * 120.00299 * 2 1 3 19 19 H 1.09000 * 109.46953 * 59.99486 * 18 2 1 20 20 C 1.52996 * 109.47332 * 180.02562 * 18 2 1 21 21 C 1.52998 * 109.47309 * 179.97438 * 20 18 2 22 22 C 1.52998 * 109.47164 * 300.00208 * 21 20 18 23 23 C 1.52998 * 109.47487 * 59.99914 * 22 21 20 24 24 H 1.09000 * 109.47531 * 59.99843 * 23 22 21 25 25 C 1.53003 * 109.47517 * 180.02562 * 23 22 21 26 26 C 1.53003 * 109.46593 * 299.99910 * 18 2 1 27 27 H 1.09002 * 109.47550 * 60.00175 * 1 2 3 28 28 H 1.09008 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47019 * 299.99517 * 1 2 3 30 30 H 0.97000 * 120.00583 * 264.99801 * 4 2 1 31 31 H 0.97000 * 119.99567 * 359.97438 * 7 5 4 32 32 H 1.09004 * 109.46794 * 59.99777 * 8 7 5 33 33 H 1.09000 * 109.47559 * 300.00254 * 8 7 5 34 34 H 1.09004 * 109.47066 * 60.00265 * 9 8 7 35 35 H 1.08994 * 109.47405 * 300.00096 * 9 8 7 36 36 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.47019 * 300.00184 * 20 18 2 38 38 H 1.09002 * 109.46807 * 59.99682 * 20 18 2 39 39 H 1.08992 * 109.47448 * 180.02562 * 21 20 18 40 40 H 1.08994 * 109.47018 * 59.99978 * 21 20 18 41 41 H 1.09001 * 109.47594 * 299.99914 * 22 21 20 42 42 H 1.09005 * 109.47582 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.46745 * 179.97438 * 25 23 22 44 44 H 1.09004 * 109.46555 * 299.99515 * 25 23 22 45 45 H 1.08994 * 109.47227 * 59.99709 * 25 23 22 46 46 H 1.08994 * 109.47227 * 299.99926 * 26 18 2 47 47 H 1.09004 * 109.47179 * 60.00358 * 26 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8575 1.1614 -2.4118 7 7 2.5958 -0.6537 -3.4577 8 6 2.7352 0.0770 -4.7197 9 6 3.2597 -0.8692 -5.8016 10 6 3.4037 -0.1173 -7.0997 11 1 3.1472 0.9307 -7.1482 12 6 3.8689 -0.7659 -8.2241 13 7 4.1816 -2.0419 -8.1650 14 14 4.0546 0.1679 -9.8312 15 1 5.4172 0.7534 -9.9089 16 1 3.8498 -0.7621 -10.9706 17 1 3.0447 1.2549 -9.8918 18 6 2.0400 -0.7213 1.2492 19 1 1.6766 -1.7490 1.2492 20 6 3.5700 -0.7208 1.2495 21 6 4.0800 -1.4415 2.4990 22 6 3.5695 -0.7202 3.7480 23 6 2.0395 -0.7207 3.7478 24 1 1.6765 -1.7485 3.7479 25 6 1.5289 0.0012 4.9964 26 6 1.5300 0.0000 2.4985 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.2490 -1.6318 -1.1526 31 1 2.8265 -1.5948 -3.4141 32 1 3.4365 0.9009 -4.5870 33 1 1.7645 0.4711 -5.0207 34 1 2.5588 -1.6933 -5.9345 35 1 4.2305 -1.2628 -5.5006 36 1 4.5084 -2.4983 -8.9562 37 1 3.9337 -1.2342 0.3595 38 1 3.9329 0.3071 1.2498 39 1 5.1699 -1.4407 2.4995 40 1 3.7171 -2.4692 2.4992 41 1 3.9324 0.3077 3.7479 42 1 3.9325 -1.2339 4.6383 43 1 0.4389 0.0011 4.9959 44 1 1.8923 -0.5121 5.8868 45 1 1.8919 1.0289 4.9959 46 1 1.8933 1.0276 2.4985 47 1 0.4400 -0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454790466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:39 Heat of formation + Delta-G solvation = -80.933242 kcal Electronic energy + Delta-G solvation = -22409.081939 eV Core-core repulsion = 19203.738295 eV Total energy + Delta-G solvation = -3205.343644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.08982 -38.90716 -35.78776 -34.56860 -32.87793 -32.56134 -31.75402 -29.49328 -28.61503 -26.63811 -24.84889 -23.78781 -21.75685 -21.17507 -20.58342 -20.38645 -19.92950 -17.90634 -16.40860 -16.08929 -15.50107 -15.07752 -14.79927 -14.60676 -14.46549 -14.21578 -13.83200 -13.68788 -13.49898 -13.20396 -13.06082 -12.67830 -12.54866 -12.25477 -12.05522 -11.74340 -11.59156 -11.43762 -11.19942 -11.15843 -11.03177 -10.95953 -10.65175 -10.60975 -10.31649 -10.28337 -10.17833 -9.85098 -9.51266 -9.22939 -8.91540 -8.45659 -8.19279 -6.07196 -4.09548 3.11768 3.31136 3.37191 3.42056 3.67512 4.31014 4.40060 4.41813 4.46886 4.74212 4.77935 4.92606 4.97837 5.09770 5.20516 5.23580 5.29918 5.32506 5.36760 5.42721 5.47056 5.53530 5.57345 5.66513 5.74613 5.79768 5.85817 5.97268 5.98131 6.01388 6.03444 6.10895 6.24155 6.32525 6.36685 6.44011 6.76006 6.82637 7.06631 7.32576 7.60643 7.66539 7.92425 8.29280 8.51484 8.95842 9.08420 9.54999 11.04510 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038379 B = 0.002603 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.387950 B =10752.766945 C =11146.222735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.166 3.834 3 H 0.085 0.915 4 N -0.748 5.748 5 C 0.699 3.301 6 O -0.599 6.599 7 N -0.740 5.740 8 C 0.141 3.859 9 C 0.013 3.987 10 C -0.520 4.520 11 H 0.059 0.941 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.092 4.092 19 H 0.073 0.927 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.091 4.091 24 H 0.068 0.932 25 C -0.148 4.148 26 C -0.108 4.108 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.392 0.608 31 H 0.392 0.608 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.261 0.739 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.969 -1.068 25.908 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.061 3.939 3 H 0.103 0.897 4 N -0.404 5.404 5 C 0.399 3.601 6 O -0.478 6.478 7 N -0.393 5.393 8 C 0.018 3.982 9 C -0.025 4.025 10 C -0.559 4.559 11 H 0.078 0.922 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.111 4.111 19 H 0.092 0.908 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.110 4.110 24 H 0.087 0.913 25 C -0.205 4.205 26 C -0.146 4.146 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.225 0.775 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.169 -0.088 25.703 26.039 hybrid contribution 0.374 -0.555 -0.937 1.151 sum -3.795 -0.643 24.767 25.064 Atomic orbital electron populations 1.22262 0.95881 1.01833 1.02416 1.20730 0.93441 0.97159 0.82596 0.89666 1.45218 1.72643 1.13387 1.09107 1.16081 0.78506 0.85193 0.80370 1.90878 1.57635 1.14575 1.84733 1.45534 1.69973 1.13870 1.09972 1.21560 1.00296 0.95553 0.80796 1.19321 0.96537 0.94628 0.91968 1.21064 1.44043 0.96669 0.94075 0.92232 1.25002 0.95250 0.94928 0.99184 1.69961 1.44572 1.09191 1.29666 0.86509 0.78575 0.79650 0.82802 1.20574 1.21200 1.19720 1.21435 0.95901 0.99935 0.93866 0.90834 1.21569 0.94615 1.01215 0.97761 1.21533 1.00226 0.99322 0.94607 1.21610 0.95102 1.00836 0.97683 1.21120 0.95503 0.99710 0.94636 0.91313 1.21833 1.00910 1.00516 0.97253 1.21657 1.00597 0.99432 0.92871 0.91928 0.92786 0.91784 0.77491 0.77500 0.92889 0.92881 0.96009 0.96014 0.92894 0.91650 0.91843 0.92056 0.92103 0.91995 0.92306 0.92720 0.92859 0.92694 0.91646 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.13 37.16 0.34 -1.45 16 2 C 0.17 1.88 2.16 -67.93 -0.15 1.73 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 4 N -0.75 -9.56 4.39 -58.68 -0.26 -9.82 16 5 C 0.70 12.41 8.53 -86.92 -0.74 11.67 16 6 O -0.60 -13.07 16.01 5.28 0.08 -12.99 16 7 N -0.74 -13.36 5.56 -65.23 -0.36 -13.72 16 8 C 0.14 3.09 5.61 -4.05 -0.02 3.07 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 10 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 14 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.09 -0.78 1.83 -90.62 -0.17 -0.94 16 19 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 20 C -0.11 -1.00 5.05 -26.73 -0.13 -1.14 16 21 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 22 C -0.11 -0.79 5.20 -26.73 -0.14 -0.93 16 23 C -0.09 -0.61 2.72 -90.64 -0.25 -0.86 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 26 C -0.11 -0.80 4.13 -26.75 -0.11 -0.91 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 30 H 0.39 4.02 8.40 -40.82 -0.34 3.67 16 31 H 0.39 6.10 8.49 -40.82 -0.35 5.75 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -31.80 368.46 -9.87 -41.67 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.87 Total: 2.91 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.74 Total: -4.55 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.12 Total: -49.16 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.08 Total: -12.99 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.80 -9.87 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454790466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.266 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds