Wall clock time and date at job start Tue Mar 31 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 N 1.46500 * 109.46826 * 239.99987 * 2 1 3 5 5 C 1.34777 * 120.00075 * 85.00078 * 4 2 1 6 6 O 1.21585 * 120.00132 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00044 * 179.97438 * 5 4 2 8 8 C 1.46507 * 120.00100 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47245 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.46906 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00233 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99927 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99970 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00184 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47386 * 90.00314 * 14 12 10 16 16 H 1.48508 * 109.47170 * 209.99953 * 14 12 10 17 17 H 1.48501 * 109.47193 * 329.99916 * 14 12 10 18 18 C 1.52995 * 109.47136 * 120.00659 * 2 1 3 19 19 H 1.09002 * 109.47457 * 59.99314 * 18 2 1 20 20 C 1.52997 * 109.47310 * 179.97438 * 18 2 1 21 21 C 1.52997 * 109.47232 * 179.97438 * 20 18 2 22 22 C 1.53002 * 109.47415 * 299.99873 * 21 20 18 23 23 C 1.52997 * 109.46817 * 59.99873 * 22 21 20 24 24 H 1.09001 * 109.47289 * 180.02562 * 23 22 21 25 25 C 1.53006 * 109.47127 * 60.00361 * 23 22 21 26 26 C 1.52997 * 109.47232 * 300.00239 * 23 22 21 27 27 H 1.09001 * 109.47109 * 300.00185 * 1 2 3 28 28 H 1.09004 * 109.47086 * 59.99712 * 1 2 3 29 29 H 1.08992 * 109.47514 * 180.02562 * 1 2 3 30 30 H 0.97006 * 120.00223 * 265.00413 * 4 2 1 31 31 H 0.96997 * 120.00305 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.46925 * 300.00376 * 8 7 5 33 33 H 1.09002 * 109.47265 * 59.99613 * 8 7 5 34 34 H 1.08997 * 109.47026 * 299.99449 * 9 8 7 35 35 H 1.08996 * 109.47259 * 60.00211 * 9 8 7 36 36 H 0.97001 * 120.00359 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.47533 * 299.99827 * 20 18 2 38 38 H 1.09002 * 109.47153 * 59.99456 * 20 18 2 39 39 H 1.09002 * 109.47497 * 60.00225 * 21 20 18 40 40 H 1.09000 * 109.47140 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.47070 * 300.00053 * 22 21 20 42 42 H 1.08996 * 109.47407 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47002 * 299.99574 * 25 23 22 44 44 H 1.08993 * 109.46955 * 60.00011 * 25 23 22 45 45 H 1.09000 * 109.47050 * 179.97438 * 25 23 22 46 46 H 1.09000 * 109.47140 * 180.02562 * 26 23 22 47 47 H 1.09001 * 109.47230 * 299.99295 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1615 -2.4117 7 7 2.5966 -0.6535 -3.4575 8 6 2.7371 0.0775 -4.7194 9 6 3.2613 -0.8688 -5.8013 10 6 3.4051 -0.1170 -7.0995 11 1 3.1487 0.9310 -7.1478 12 6 3.8650 -0.7668 -8.2251 13 7 4.1777 -2.0429 -8.1661 14 14 4.0440 0.1652 -9.8341 15 1 5.4063 0.7501 -9.9184 16 1 3.8340 -0.7661 -10.9716 17 1 3.0340 1.2523 -9.8914 18 6 2.0400 -0.7214 1.2491 19 1 1.6766 -1.7490 1.2491 20 6 3.5700 -0.7220 1.2488 21 6 4.0799 -1.4428 2.4983 22 6 3.5705 -0.7208 3.7474 23 6 2.0405 -0.7202 3.7476 24 1 1.6775 -0.2054 4.6372 25 6 1.5300 -2.1625 3.7485 26 6 1.5306 0.0006 2.4982 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 2.2489 -1.6319 -1.1527 31 1 2.8273 -1.5947 -3.4140 32 1 1.7666 0.4715 -5.0209 33 1 3.4382 0.9014 -4.5860 34 1 4.2317 -1.2632 -5.5000 35 1 2.5598 -1.6924 -5.9347 36 1 4.5009 -2.5002 -8.9582 37 1 3.9330 -1.2360 0.3589 38 1 3.9337 0.3056 1.2486 39 1 3.7163 -2.4703 2.4989 40 1 5.1699 -1.4436 2.4978 41 1 3.9343 0.3068 3.7468 42 1 3.9335 -1.2345 4.6375 43 1 1.8929 -2.6769 2.8586 44 1 1.8933 -2.6760 4.6386 45 1 0.4400 -2.1621 3.7491 46 1 0.4406 0.0014 2.4986 47 1 1.8942 1.0282 2.4977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454790468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:41 Heat of formation + Delta-G solvation = -76.476235 kcal Electronic energy + Delta-G solvation = -22592.105628 eV Core-core repulsion = 19386.955255 eV Total energy + Delta-G solvation = -3205.150374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21565 -39.04781 -35.78277 -34.55726 -32.86815 -32.00714 -31.75527 -29.48450 -28.62213 -27.01903 -24.86511 -23.76418 -22.27588 -21.25747 -20.64633 -20.40919 -18.91886 -17.93951 -16.40308 -16.19176 -15.71350 -15.11654 -14.81710 -14.50224 -14.42791 -14.17640 -13.85538 -13.75214 -13.52758 -13.21273 -12.95389 -12.80231 -12.48472 -12.25426 -11.95756 -11.85937 -11.54985 -11.37371 -11.27655 -11.15866 -11.06630 -10.98981 -10.61162 -10.41016 -10.28522 -10.22846 -10.17992 -9.84521 -9.51186 -9.22922 -8.91334 -8.45664 -8.19195 -6.07192 -4.09615 3.12209 3.31125 3.37180 3.42045 3.67759 4.34392 4.40121 4.42563 4.45291 4.74422 4.81426 4.96901 4.98458 5.11258 5.14175 5.24789 5.29374 5.29941 5.36265 5.44893 5.47739 5.56665 5.61640 5.69212 5.76335 5.79445 5.87707 5.96035 5.98542 6.00393 6.05442 6.15562 6.25137 6.33442 6.37140 6.44053 6.76261 6.82719 7.06684 7.32724 7.60665 7.66578 7.92433 8.29297 8.51624 8.95843 9.08590 9.55014 11.04544 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035587 B = 0.002689 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.620661 B =10408.397538 C =10747.853359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.166 3.834 3 H 0.085 0.915 4 N -0.748 5.748 5 C 0.699 3.301 6 O -0.599 6.599 7 N -0.740 5.740 8 C 0.141 3.859 9 C 0.013 3.987 10 C -0.520 4.520 11 H 0.059 0.941 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.094 4.094 19 H 0.077 0.923 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.091 4.091 24 H 0.068 0.932 25 C -0.151 4.151 26 C -0.108 4.108 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.392 0.608 31 H 0.392 0.608 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.068 0.932 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 -1.713 25.543 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 H 0.103 0.897 4 N -0.403 5.403 5 C 0.399 3.601 6 O -0.478 6.478 7 N -0.394 5.394 8 C 0.018 3.982 9 C -0.024 4.024 10 C -0.559 4.559 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.113 4.113 19 H 0.095 0.905 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.153 4.153 23 C -0.109 4.109 24 H 0.086 0.914 25 C -0.208 4.208 26 C -0.146 4.146 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.225 0.775 31 H 0.225 0.775 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.169 -0.736 25.336 25.688 hybrid contribution 0.366 -0.536 -0.927 1.132 sum -3.804 -1.272 24.409 24.736 Atomic orbital electron populations 1.22258 0.95899 1.01816 1.02396 1.20739 0.93430 0.97162 0.82638 0.89701 1.45219 1.72645 1.13374 1.09103 1.16079 0.78505 0.85192 0.80369 1.90875 1.57664 1.14551 1.84725 1.45538 1.69944 1.13870 1.10013 1.21561 1.00293 0.95546 0.80803 1.19319 0.96535 0.94626 0.91960 1.21063 1.44154 0.96635 0.94011 0.92233 1.24995 0.95240 0.94914 0.99180 1.69957 1.44664 1.09170 1.29624 0.86513 0.78574 0.79646 0.82828 1.20568 1.21194 1.19719 1.21469 0.95898 1.00130 0.93757 0.90506 1.21562 0.94628 1.01197 0.97734 1.21573 1.00113 0.99579 0.94578 1.21571 0.95152 1.00717 0.97811 1.21085 0.95507 0.96426 0.97902 0.91403 1.21946 1.00755 0.96248 1.01883 1.21628 1.00608 0.99189 0.93178 0.91804 0.91944 0.92796 0.77513 0.77507 0.92892 0.92884 0.96018 0.96008 0.92887 0.91687 0.91887 0.91770 0.92180 0.92043 0.92306 0.91939 0.93051 0.92860 0.91367 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.13 37.16 0.34 -1.45 16 2 C 0.17 1.87 2.16 -67.93 -0.15 1.72 16 3 H 0.08 1.16 7.58 -51.93 -0.39 0.77 16 4 N -0.75 -9.55 4.39 -58.68 -0.26 -9.81 16 5 C 0.70 12.40 8.53 -86.92 -0.74 11.66 16 6 O -0.60 -13.07 16.01 5.29 0.08 -12.98 16 7 N -0.74 -13.36 5.56 -65.22 -0.36 -13.73 16 8 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 14 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.09 -0.78 1.55 -90.62 -0.14 -0.92 16 19 H 0.08 0.60 6.43 -51.93 -0.33 0.27 16 20 C -0.11 -1.00 5.05 -26.73 -0.13 -1.13 16 21 C -0.12 -0.90 5.65 -26.73 -0.15 -1.05 16 22 C -0.11 -0.79 5.45 -26.73 -0.15 -0.94 16 23 C -0.09 -0.60 3.19 -90.62 -0.29 -0.89 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 C -0.15 -0.95 8.50 37.16 0.32 -0.64 16 26 C -0.11 -0.80 4.38 -26.73 -0.12 -0.92 16 27 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.39 4.01 8.40 -40.82 -0.34 3.67 16 31 H 0.39 6.09 8.49 -40.82 -0.35 5.75 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.06 0.62 7.44 -51.93 -0.39 0.23 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.41 4.81 -51.93 -0.25 0.16 16 44 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -31.82 361.42 -9.67 -41.49 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.51 Total: 3.31 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -1.79 Total: -4.66 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.12 Total: -49.15 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.82 -9.67 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454790468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.983 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds