Wall clock time and date at job start Tue Mar 31 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 N 1.46500 * 109.46826 * 239.99987 * 2 1 3 5 5 C 1.34777 * 120.00075 * 85.00078 * 4 2 1 6 6 O 1.21585 * 120.00132 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00044 * 179.97438 * 5 4 2 8 8 C 1.46507 * 120.00100 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47245 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.46906 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00233 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99927 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99970 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00184 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47386 * 90.00314 * 14 12 10 16 16 H 1.48508 * 109.47170 * 209.99953 * 14 12 10 17 17 H 1.48501 * 109.47193 * 329.99916 * 14 12 10 18 18 C 1.52995 * 109.47136 * 120.00659 * 2 1 3 19 19 H 1.09002 * 109.47457 * 59.99314 * 18 2 1 20 20 C 1.52997 * 109.47310 * 179.97438 * 18 2 1 21 21 C 1.52997 * 109.47232 * 179.97438 * 20 18 2 22 22 C 1.53002 * 109.47415 * 299.99873 * 21 20 18 23 23 C 1.52997 * 109.46817 * 59.99873 * 22 21 20 24 24 H 1.09001 * 109.47289 * 180.02562 * 23 22 21 25 25 C 1.53006 * 109.47127 * 60.00361 * 23 22 21 26 26 C 1.52997 * 109.47232 * 300.00239 * 23 22 21 27 27 H 1.09001 * 109.47109 * 300.00185 * 1 2 3 28 28 H 1.09004 * 109.47086 * 59.99712 * 1 2 3 29 29 H 1.08992 * 109.47514 * 180.02562 * 1 2 3 30 30 H 0.97006 * 120.00223 * 265.00413 * 4 2 1 31 31 H 0.96997 * 120.00305 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.46925 * 300.00376 * 8 7 5 33 33 H 1.09002 * 109.47265 * 59.99613 * 8 7 5 34 34 H 1.08997 * 109.47026 * 299.99449 * 9 8 7 35 35 H 1.08996 * 109.47259 * 60.00211 * 9 8 7 36 36 H 0.97001 * 120.00359 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.47533 * 299.99827 * 20 18 2 38 38 H 1.09002 * 109.47153 * 59.99456 * 20 18 2 39 39 H 1.09002 * 109.47497 * 60.00225 * 21 20 18 40 40 H 1.09000 * 109.47140 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.47070 * 300.00053 * 22 21 20 42 42 H 1.08996 * 109.47407 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47002 * 299.99574 * 25 23 22 44 44 H 1.08993 * 109.46955 * 60.00011 * 25 23 22 45 45 H 1.09000 * 109.47050 * 179.97438 * 25 23 22 46 46 H 1.09000 * 109.47140 * 180.02562 * 26 23 22 47 47 H 1.09001 * 109.47230 * 299.99295 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1615 -2.4117 7 7 2.5966 -0.6535 -3.4575 8 6 2.7371 0.0775 -4.7194 9 6 3.2613 -0.8688 -5.8013 10 6 3.4051 -0.1170 -7.0995 11 1 3.1487 0.9310 -7.1478 12 6 3.8650 -0.7668 -8.2251 13 7 4.1777 -2.0429 -8.1661 14 14 4.0440 0.1652 -9.8341 15 1 5.4063 0.7501 -9.9184 16 1 3.8340 -0.7661 -10.9716 17 1 3.0340 1.2523 -9.8914 18 6 2.0400 -0.7214 1.2491 19 1 1.6766 -1.7490 1.2491 20 6 3.5700 -0.7220 1.2488 21 6 4.0799 -1.4428 2.4983 22 6 3.5705 -0.7208 3.7474 23 6 2.0405 -0.7202 3.7476 24 1 1.6775 -0.2054 4.6372 25 6 1.5300 -2.1625 3.7485 26 6 1.5306 0.0006 2.4982 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 2.2489 -1.6319 -1.1527 31 1 2.8273 -1.5947 -3.4140 32 1 1.7666 0.4715 -5.0209 33 1 3.4382 0.9014 -4.5860 34 1 4.2317 -1.2632 -5.5000 35 1 2.5598 -1.6924 -5.9347 36 1 4.5009 -2.5002 -8.9582 37 1 3.9330 -1.2360 0.3589 38 1 3.9337 0.3056 1.2486 39 1 3.7163 -2.4703 2.4989 40 1 5.1699 -1.4436 2.4978 41 1 3.9343 0.3068 3.7468 42 1 3.9335 -1.2345 4.6375 43 1 1.8929 -2.6769 2.8586 44 1 1.8933 -2.6760 4.6386 45 1 0.4400 -2.1621 3.7491 46 1 0.4406 0.0014 2.4986 47 1 1.8942 1.0282 2.4977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454790468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:40 Heat of formation + Delta-G solvation = -95.902730 kcal Electronic energy + Delta-G solvation = -22592.948024 eV Core-core repulsion = 19386.955255 eV Total energy + Delta-G solvation = -3205.992770 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30070 -40.08493 -37.00347 -36.16461 -34.82423 -32.97657 -32.61219 -31.13069 -29.58889 -27.58110 -26.70843 -24.77128 -22.97007 -22.90698 -22.00134 -21.52189 -19.71558 -19.17092 -18.41470 -17.37258 -16.61690 -16.58082 -16.43086 -15.76749 -15.39473 -15.12991 -15.04605 -14.87034 -14.55197 -14.40590 -14.27367 -13.73886 -13.59301 -13.29651 -13.20285 -12.93590 -12.63178 -12.55139 -12.51759 -12.32210 -12.22397 -12.06760 -11.85007 -11.73106 -11.65091 -11.49316 -11.20078 -11.06463 -10.87657 -10.77159 -10.60210 -10.26249 -9.67973 -8.23962 -6.34202 1.41857 1.42508 1.53957 1.81271 2.21848 2.41656 3.10808 3.40267 3.61075 3.80246 3.84681 4.16849 4.25761 4.32748 4.45598 4.48565 4.51127 4.52732 4.54044 4.59085 4.67477 4.70874 4.83989 4.87040 4.88738 4.98748 5.06820 5.08898 5.17809 5.20149 5.25231 5.31740 5.33978 5.38302 5.43396 5.50433 5.52572 5.54749 5.59913 5.67544 5.71553 5.79900 6.10117 6.17924 6.78967 7.18067 7.35184 7.65672 8.88050 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035587 B = 0.002689 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.620661 B =10408.397538 C =10747.853359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.164 3.836 3 H 0.058 0.942 4 N -0.726 5.726 5 C 0.698 3.302 6 O -0.641 6.641 7 N -0.735 5.735 8 C 0.162 3.838 9 C 0.025 3.975 10 C -0.547 4.547 11 H 0.058 0.942 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.267 1.267 18 C -0.081 4.081 19 H 0.092 0.908 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.088 4.088 24 H 0.075 0.925 25 C -0.150 4.150 26 C -0.107 4.107 27 H 0.084 0.916 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.408 0.592 31 H 0.406 0.594 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.008 0.992 35 H 0.009 0.991 36 H 0.266 0.734 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.076 0.924 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 -2.383 26.681 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.059 3.941 3 H 0.077 0.923 4 N -0.382 5.382 5 C 0.397 3.603 6 O -0.523 6.523 7 N -0.390 5.390 8 C 0.037 3.963 9 C -0.012 4.012 10 C -0.585 4.585 11 H 0.076 0.924 12 C -0.192 4.192 13 N -0.566 5.566 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.100 4.100 19 H 0.110 0.890 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.106 4.106 24 H 0.093 0.907 25 C -0.207 4.207 26 C -0.145 4.145 27 H 0.103 0.897 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.244 0.756 31 H 0.241 0.759 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.509 -1.453 26.526 26.946 hybrid contribution 0.475 -0.341 -1.211 1.345 sum -4.035 -1.794 25.315 25.697 Atomic orbital electron populations 1.22209 0.95092 1.02640 1.01869 1.20896 0.94019 0.96176 0.83011 0.92340 1.45080 1.71234 1.14007 1.07916 1.16194 0.78137 0.84738 0.81182 1.90848 1.59404 1.16578 1.85494 1.45225 1.70293 1.14361 1.09095 1.21038 0.98997 0.94609 0.81639 1.19114 0.95481 0.94432 0.92220 1.21469 1.44555 0.96962 0.95535 0.92376 1.25867 0.94669 0.95815 1.02804 1.70056 1.45155 1.10576 1.30839 0.85444 0.78835 0.78435 0.78330 1.19731 1.20427 1.19113 1.21387 0.95494 1.00562 0.92514 0.88972 1.21552 0.94940 1.00367 0.98310 1.21544 1.00072 0.99848 0.94009 1.21575 0.95452 1.00400 0.97813 1.21069 0.95177 0.96807 0.97552 0.90698 1.21938 1.01031 0.95702 1.02072 1.21633 1.01108 0.98770 0.92997 0.89690 0.95133 0.91221 0.75599 0.75884 0.94064 0.94046 0.97326 0.97310 0.92524 0.92452 0.93490 0.90902 0.92308 0.92663 0.91401 0.92099 0.92534 0.92450 0.90502 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.13 71.98 0.66 -2.61 16 2 C 0.16 3.59 2.16 44.99 0.10 3.68 16 3 H 0.06 1.63 7.58 -2.39 -0.02 1.61 16 4 N -0.73 -18.06 4.39 -457.83 -2.01 -20.07 16 5 C 0.70 24.90 8.53 179.06 1.53 26.42 16 6 O -0.64 -28.61 16.01 -3.98 -0.06 -28.68 16 7 N -0.74 -26.64 5.56 -478.53 -2.66 -29.30 16 8 C 0.16 7.24 5.61 86.38 0.48 7.73 16 9 C 0.03 1.29 5.09 29.85 0.15 1.44 16 10 C -0.55 -31.04 9.11 25.60 0.23 -30.81 16 11 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 12 C 0.01 0.40 5.46 84.65 0.46 0.87 16 13 N -0.93 -54.70 13.29 21.45 0.28 -54.42 16 14 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 C -0.08 -1.22 1.55 -10.80 -0.02 -1.23 16 19 H 0.09 1.17 6.43 -2.39 -0.02 1.16 16 20 C -0.11 -1.89 5.05 30.59 0.15 -1.74 16 21 C -0.12 -1.55 5.65 30.59 0.17 -1.38 16 22 C -0.11 -1.37 5.45 30.59 0.17 -1.20 16 23 C -0.09 -0.96 3.19 -10.79 -0.03 -0.99 16 24 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 25 C -0.15 -1.46 8.50 71.98 0.61 -0.85 16 26 C -0.11 -1.39 4.38 30.59 0.13 -1.26 16 27 H 0.08 1.37 6.43 -2.39 -0.02 1.35 16 28 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.41 7.67 8.40 -92.70 -0.78 6.89 16 31 H 0.41 12.43 8.49 -92.71 -0.79 11.65 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.06 1.03 7.44 -2.39 -0.02 1.01 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 0.86 6.43 -2.39 -0.02 0.84 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.61 4.81 -2.39 -0.01 0.60 16 44 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.08 0.88 6.43 -2.39 -0.02 0.87 16 47 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -68.66 361.42 1.76 -66.90 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.62 Total: 21.42 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 4.80 Total: -1.93 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -4.38 Total: -103.78 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.06 Total: -28.68 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -68.66 1.76 -66.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454790468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.003 kcal (2) G-P(sol) polarization free energy of solvation -68.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds