Wall clock time and date at job start Tue Mar 31 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 N 1.46500 * 109.46826 * 239.99987 * 2 1 3 5 5 C 1.34777 * 120.00075 * 85.00078 * 4 2 1 6 6 O 1.21587 * 119.99681 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00044 * 179.97438 * 5 4 2 8 8 C 1.46500 * 119.99839 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.47154 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47076 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00233 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99927 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99963 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00005 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47165 * 89.99582 * 14 12 10 16 16 H 1.48502 * 109.47301 * 210.00108 * 14 12 10 17 17 H 1.48504 * 109.47314 * 329.99923 * 14 12 10 18 18 C 1.53000 * 109.46886 * 120.00434 * 2 1 3 19 19 H 1.09000 * 109.46968 * 179.97438 * 18 2 1 20 20 C 1.52996 * 109.47328 * 59.99799 * 18 2 1 21 21 C 1.53000 * 109.47328 * 179.97438 * 20 18 2 22 22 C 1.53002 * 109.47233 * 59.99531 * 21 20 18 23 23 C 1.53006 * 109.46977 * 300.00464 * 22 21 20 24 24 H 1.08998 * 109.46505 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47127 * 299.99541 * 23 22 21 26 26 C 1.52992 * 109.47223 * 60.00047 * 23 22 21 27 27 H 1.09004 * 109.47086 * 59.99712 * 1 2 3 28 28 H 1.08992 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46652 * 299.99911 * 1 2 3 30 30 H 0.97006 * 120.00223 * 265.00413 * 4 2 1 31 31 H 0.96997 * 120.00305 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.47564 * 300.00083 * 8 7 5 33 33 H 1.09002 * 109.47717 * 60.00125 * 8 7 5 34 34 H 1.08998 * 109.47261 * 300.00103 * 9 8 7 35 35 H 1.08996 * 109.47112 * 60.00276 * 9 8 7 36 36 H 0.97001 * 119.99574 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.46870 * 299.99783 * 20 18 2 38 38 H 1.09001 * 109.47372 * 59.99633 * 20 18 2 39 39 H 1.08992 * 109.47399 * 179.97438 * 21 20 18 40 40 H 1.09004 * 109.46724 * 300.00183 * 21 20 18 41 41 H 1.08993 * 109.47662 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.46986 * 60.00203 * 22 21 20 43 43 H 1.09002 * 109.47153 * 180.02562 * 25 23 22 44 44 H 1.09001 * 109.46832 * 60.00321 * 25 23 22 45 45 H 1.09004 * 109.47261 * 300.00303 * 25 23 22 46 46 H 1.08996 * 109.47747 * 59.99547 * 26 23 22 47 47 H 1.09002 * 109.47103 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1616 -2.4116 7 7 2.5966 -0.6535 -3.4575 8 6 2.7371 0.0775 -4.7193 9 6 3.2613 -0.8688 -5.8013 10 6 3.4051 -0.1170 -7.0995 11 1 3.1487 0.9310 -7.1478 12 6 3.8650 -0.7668 -8.2251 13 7 3.9910 -0.1106 -9.3579 14 14 4.3092 -2.5793 -8.1413 15 1 3.1119 -3.3977 -8.4611 16 1 5.3849 -2.8713 -9.1226 17 1 4.7837 -2.9100 -6.7736 18 6 2.0399 -0.7214 1.2492 19 1 3.1300 -0.7218 1.2490 20 6 1.5299 -2.1638 1.2492 21 6 2.0404 -2.8853 2.4980 22 6 1.5310 -2.1643 3.7477 23 6 2.0411 -0.7218 3.7476 24 1 1.6779 -0.2080 4.6377 25 6 3.5711 -0.7218 3.7470 26 6 1.5306 -0.0003 2.4988 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.2489 -1.6319 -1.1527 31 1 2.8273 -1.5947 -3.4140 32 1 1.7666 0.4716 -5.0209 33 1 3.4382 0.9014 -4.5859 34 1 4.2317 -1.2633 -5.5000 35 1 2.5598 -1.6923 -5.9347 36 1 4.3142 -0.5679 -10.1499 37 1 0.4399 -2.1637 1.2492 38 1 1.8932 -2.6776 0.3591 39 1 1.6767 -3.9128 2.4982 40 1 3.1304 -2.8853 2.4975 41 1 1.8950 -2.6780 4.6374 42 1 0.4410 -2.1642 3.7482 43 1 3.9345 0.3058 3.7474 44 1 3.9340 -1.2356 2.8567 45 1 3.9348 -1.2359 4.6368 46 1 0.4406 -0.0002 2.4992 47 1 1.8936 1.0275 2.4991 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454790469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:44 Heat of formation + Delta-G solvation = -69.479818 kcal Electronic energy + Delta-G solvation = -22652.931710 eV Core-core repulsion = 19448.084724 eV Total energy + Delta-G solvation = -3204.846986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.37210 -39.14436 -35.88887 -34.68727 -32.85062 -32.04509 -31.78693 -29.87527 -28.59937 -27.09354 -25.08891 -23.97770 -22.77023 -21.08810 -20.67118 -20.12309 -18.67874 -18.07959 -16.85473 -16.26915 -15.55999 -15.25731 -15.05093 -14.85380 -14.32245 -14.22995 -14.06796 -13.77507 -13.59396 -13.25958 -13.12933 -12.69948 -12.58292 -12.47934 -12.09440 -11.97606 -11.80802 -11.45280 -11.31153 -11.22991 -11.14269 -11.04245 -10.54822 -10.35539 -10.25029 -10.24298 -10.15702 -9.95123 -9.69382 -9.29814 -8.99511 -8.60690 -8.33450 -6.09042 -4.08802 3.03840 3.26435 3.33921 3.35372 3.59187 4.31212 4.33955 4.38477 4.39403 4.59654 4.76932 4.87584 4.93015 5.02653 5.05297 5.20297 5.23945 5.24910 5.32621 5.37327 5.38969 5.50166 5.55747 5.65384 5.70057 5.75886 5.83173 5.86322 5.92575 5.92771 6.02415 6.06187 6.15056 6.16454 6.28540 6.34538 6.61244 6.71224 6.87232 7.10574 7.27901 7.35839 7.70091 8.36249 8.49181 8.95380 8.99402 9.51215 11.04096 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030134 B = 0.002879 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.945473 B = 9722.941953 C =10162.304908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.166 3.834 3 H 0.086 0.914 4 N -0.748 5.748 5 C 0.699 3.301 6 O -0.595 6.595 7 N -0.744 5.744 8 C 0.149 3.851 9 C -0.021 4.021 10 C -0.521 4.521 11 H 0.076 0.924 12 C 0.068 3.932 13 N -0.899 5.899 14 Si 0.883 3.117 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.266 1.266 18 C -0.095 4.095 19 H 0.079 0.921 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.114 4.114 23 C -0.091 4.091 24 H 0.068 0.932 25 C -0.152 4.152 26 C -0.108 4.108 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.391 0.609 31 H 0.390 0.610 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.021 0.979 35 H 0.017 0.983 36 H 0.264 0.736 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 -6.772 28.636 29.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.060 3.940 3 H 0.104 0.896 4 N -0.405 5.405 5 C 0.399 3.601 6 O -0.474 6.474 7 N -0.397 5.397 8 C 0.026 3.974 9 C -0.059 4.059 10 C -0.560 4.560 11 H 0.094 0.906 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.710 3.290 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.191 1.191 18 C -0.114 4.114 19 H 0.097 0.903 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.109 4.109 24 H 0.087 0.913 25 C -0.210 4.210 26 C -0.146 4.146 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.223 0.777 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.771 -5.661 28.346 29.297 hybrid contribution 0.478 -1.871 -0.152 1.937 sum -4.293 -7.532 28.194 29.497 Atomic orbital electron populations 1.22305 0.95879 1.01953 1.02389 1.20716 0.93718 0.96944 0.82577 0.89612 1.45300 1.72635 1.13450 1.09146 1.16066 0.78497 0.85213 0.80361 1.90894 1.57365 1.14454 1.84654 1.45526 1.70300 1.13758 1.10155 1.21352 1.00886 0.95081 0.80089 1.19793 0.96069 0.95603 0.94462 1.20929 1.44590 0.98543 0.91913 0.90590 1.25003 0.94905 0.98197 0.95231 1.69908 1.46595 1.36651 1.00600 0.86743 0.78444 0.85682 0.78132 1.20261 1.21312 1.19111 1.21463 1.01014 0.95094 0.93817 0.90312 1.21653 1.01304 0.94905 0.97598 1.21569 1.01049 0.98684 0.94568 1.21562 1.00502 0.95329 0.97768 1.21086 0.95949 0.95961 0.97937 0.91350 1.21957 0.95353 1.01773 1.01875 1.21627 1.00980 0.98901 0.93126 0.92011 0.92463 0.91792 0.77462 0.77707 0.92244 0.92214 0.96071 0.96509 0.92582 0.91281 0.92188 0.92181 0.91696 0.92265 0.92052 0.92768 0.91948 0.93027 0.91285 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 8.78 37.16 0.33 -1.40 16 2 C 0.17 1.80 2.41 -67.93 -0.16 1.64 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 4 N -0.75 -9.18 5.00 -58.68 -0.29 -9.47 16 5 C 0.70 11.98 8.53 -86.92 -0.74 11.24 16 6 O -0.60 -12.71 16.01 5.29 0.08 -12.62 16 7 N -0.74 -12.69 5.56 -65.22 -0.36 -13.05 16 8 C 0.15 3.13 5.61 -4.04 -0.02 3.11 16 9 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 10 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 11 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 14 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 18 C -0.09 -0.75 1.90 -90.62 -0.17 -0.93 16 19 H 0.08 0.67 6.43 -51.93 -0.33 0.34 16 20 C -0.12 -0.82 4.68 -26.73 -0.13 -0.94 16 21 C -0.12 -0.76 5.65 -26.73 -0.15 -0.91 16 22 C -0.11 -0.68 5.45 -26.73 -0.15 -0.83 16 23 C -0.09 -0.57 3.19 -90.62 -0.29 -0.86 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 C -0.15 -0.98 8.50 37.16 0.32 -0.67 16 26 C -0.11 -0.77 4.38 -26.73 -0.12 -0.88 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 29 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 30 H 0.39 3.78 6.88 -40.82 -0.28 3.50 16 31 H 0.39 5.51 8.49 -40.82 -0.35 5.17 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 35 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 38 H 0.06 0.41 6.51 -51.93 -0.34 0.08 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.43 4.81 -51.93 -0.25 0.18 16 45 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -32.59 352.44 -9.18 -41.77 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.19 Total: 3.62 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.83 Total: -5.28 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.12 Total: -49.32 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.59 -9.18 -41.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454790469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.709 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds