Wall clock time and date at job start Tue Mar 31 2020 06:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46550 * 2 1 4 4 N 1.46496 * 109.47037 * 240.00606 * 2 1 3 5 5 C 1.34777 * 120.00374 * 84.99511 * 4 2 1 6 6 O 1.21589 * 119.99843 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00160 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00094 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47401 * 180.02562 * 8 7 5 10 10 C 1.50694 * 109.47227 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00354 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00243 * 179.97438 * 10 9 8 13 13 N 1.31523 * 119.99660 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00522 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46664 * 60.00042 * 14 12 10 16 16 H 1.48499 * 109.47303 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47155 * 300.00312 * 14 12 10 18 18 C 1.52992 * 109.47106 * 120.00405 * 2 1 3 19 19 H 1.08998 * 109.46862 * 180.02562 * 18 2 1 20 20 C 1.52997 * 109.47482 * 60.00162 * 18 2 1 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 18 2 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 18 23 23 C 1.53002 * 109.46891 * 299.99597 * 22 21 20 24 24 H 1.09001 * 109.47142 * 300.00176 * 23 22 21 25 25 C 1.52996 * 109.46891 * 179.97438 * 23 22 21 26 26 C 1.52997 * 109.46978 * 60.00410 * 23 22 21 27 27 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47596 * 299.99664 * 1 2 3 29 29 H 1.08996 * 109.47407 * 60.00059 * 1 2 3 30 30 H 0.97005 * 119.99943 * 264.99747 * 4 2 1 31 31 H 0.97005 * 120.00157 * 0.02562 * 7 5 4 32 32 H 1.09000 * 109.47332 * 300.00601 * 8 7 5 33 33 H 1.08995 * 109.47151 * 60.00440 * 8 7 5 34 34 H 1.09000 * 109.46967 * 300.00333 * 9 8 7 35 35 H 1.08995 * 109.47009 * 59.99862 * 9 8 7 36 36 H 0.97000 * 119.99830 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.47153 * 59.99783 * 20 18 2 38 38 H 1.09001 * 109.46832 * 299.99974 * 20 18 2 39 39 H 1.09004 * 109.46724 * 180.02562 * 21 20 18 40 40 H 1.09001 * 109.47194 * 299.99650 * 21 20 18 41 41 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 42 42 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 43 43 H 1.08996 * 109.47261 * 60.00575 * 25 23 22 44 44 H 1.09004 * 109.47368 * 180.02562 * 25 23 22 45 45 H 1.09001 * 109.47372 * 300.00036 * 25 23 22 46 46 H 1.09001 * 109.47375 * 59.99908 * 26 23 22 47 47 H 1.09000 * 109.47140 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8582 1.1618 -2.4116 7 7 2.5967 -0.6532 -3.4575 8 6 2.7370 0.0778 -4.7193 9 6 3.2613 -0.8684 -5.8014 10 6 3.4063 -0.1163 -7.0991 11 1 3.1497 0.9316 -7.1475 12 6 3.8665 -0.7660 -8.2248 13 7 4.1784 -2.0423 -8.1660 14 14 4.0455 0.1661 -9.8337 15 1 5.0005 1.2886 -9.6517 16 1 4.5557 -0.7519 -10.8836 17 1 2.7233 0.7029 -10.2446 18 6 2.0400 -0.7213 1.2491 19 1 3.1300 -0.7209 1.2493 20 6 1.5301 -2.1638 1.2491 21 6 2.0396 -2.8849 2.4986 22 6 1.5291 -2.1636 3.7476 23 6 2.0391 -0.7210 3.7476 24 1 3.1291 -0.7210 3.7481 25 6 1.5280 0.0005 4.9963 26 6 1.5295 0.0001 2.4982 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 2.2491 -1.6317 -1.1527 31 1 2.8275 -1.5944 -3.4140 32 1 1.7665 0.4719 -5.0208 33 1 3.4381 0.9016 -4.5859 34 1 4.2318 -1.2628 -5.5000 35 1 2.5600 -1.6920 -5.9347 36 1 4.5025 -2.4993 -8.9579 37 1 1.8934 -2.6776 0.3591 38 1 0.4401 -2.1638 1.2491 39 1 1.6767 -3.9127 2.4983 40 1 3.1296 -2.8849 2.4991 41 1 0.4391 -2.1635 3.7472 42 1 1.8917 -2.6776 4.6378 43 1 1.8906 -0.5131 5.8866 44 1 1.8909 1.0283 4.9962 45 1 0.4380 0.0005 4.9954 46 1 0.4395 0.0001 2.4977 47 1 1.8924 1.0279 2.4984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454790471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:46 Heat of formation + Delta-G solvation = -78.168957 kcal Electronic energy + Delta-G solvation = -22408.046332 eV Core-core repulsion = 19202.822556 eV Total energy + Delta-G solvation = -3205.223775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.18580 -38.94576 -35.80198 -34.58441 -32.88375 -32.50552 -31.72500 -29.46737 -28.48373 -26.71118 -24.95692 -23.92529 -22.28787 -21.19790 -20.60827 -20.21727 -19.37461 -17.98704 -16.36033 -16.00724 -15.39653 -15.21106 -14.87612 -14.74776 -14.53303 -14.33398 -14.12814 -13.60407 -13.40179 -13.36003 -12.87471 -12.64641 -12.43871 -12.24735 -12.09714 -11.87487 -11.78312 -11.33325 -11.16362 -11.15700 -11.00341 -10.91627 -10.62889 -10.62166 -10.37340 -10.27320 -10.14000 -9.85958 -9.51087 -9.24169 -8.92796 -8.45164 -8.19416 -6.06792 -4.09315 3.11980 3.33178 3.36696 3.40710 3.67117 4.32776 4.36745 4.41280 4.45014 4.70351 4.76336 4.90106 4.95091 5.08134 5.17337 5.22703 5.29442 5.30144 5.34067 5.37842 5.43835 5.50672 5.57304 5.65056 5.74595 5.77754 5.86981 5.91564 5.96031 5.97038 6.02554 6.09878 6.17383 6.36153 6.37393 6.44189 6.76036 6.82757 7.06588 7.32432 7.60594 7.66721 7.92636 8.29447 8.51208 8.95823 9.08213 9.55182 11.04860 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041425 B = 0.002549 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.762662 B =10981.763640 C =11355.116762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.167 3.833 3 H 0.085 0.915 4 N -0.749 5.749 5 C 0.698 3.302 6 O -0.599 6.599 7 N -0.740 5.740 8 C 0.141 3.859 9 C 0.013 3.987 10 C -0.520 4.520 11 H 0.059 0.941 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.094 4.094 19 H 0.075 0.925 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.092 4.092 24 H 0.069 0.931 25 C -0.148 4.148 26 C -0.108 4.108 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.392 0.608 31 H 0.392 0.608 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 -2.176 25.952 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.103 0.897 4 N -0.406 5.406 5 C 0.398 3.602 6 O -0.478 6.478 7 N -0.394 5.394 8 C 0.018 3.982 9 C -0.024 4.024 10 C -0.559 4.559 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.113 4.113 19 H 0.094 0.906 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.110 4.110 24 H 0.087 0.913 25 C -0.205 4.205 26 C -0.146 4.146 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.226 0.774 31 H 0.225 0.775 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.731 -1.205 25.744 26.402 hybrid contribution 0.376 -0.540 -0.939 1.146 sum -5.355 -1.745 24.806 25.437 Atomic orbital electron populations 1.22305 0.95914 1.01966 1.02329 1.20692 0.93691 0.96913 0.82606 0.89664 1.45298 1.72662 1.13487 1.09128 1.16098 0.78502 0.85202 0.80408 1.90876 1.57659 1.14541 1.84743 1.45538 1.69924 1.13876 1.10017 1.21566 1.00306 0.95559 0.80797 1.19316 0.96538 0.94617 0.91948 1.21022 1.44259 0.96608 0.94036 0.92280 1.25000 0.95233 0.94928 0.99172 1.69952 1.44590 1.09161 1.29703 0.86566 0.78604 0.79582 0.82743 1.20114 1.21277 1.20107 1.21425 1.00782 0.95146 0.93905 0.90637 1.21659 1.01305 0.94885 0.97658 1.21531 1.00816 0.98793 0.94579 1.21593 1.00734 0.95133 0.97654 1.21129 1.00381 0.94883 0.94652 0.91284 1.21830 1.01169 1.00264 0.97239 1.21662 1.01200 0.98870 0.92844 0.92443 0.91832 0.92035 0.77402 0.77507 0.92875 0.92865 0.96012 0.96014 0.92835 0.92064 0.91266 0.92045 0.92027 0.92020 0.92280 0.92859 0.92676 0.92729 0.91255 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 8.78 37.16 0.33 -1.48 16 2 C 0.17 1.90 2.40 -67.94 -0.16 1.73 16 3 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 4 N -0.75 -9.75 5.00 -58.68 -0.29 -10.04 16 5 C 0.70 12.53 8.53 -86.92 -0.74 11.79 16 6 O -0.60 -13.14 16.01 5.29 0.08 -13.06 16 7 N -0.74 -13.47 5.56 -65.23 -0.36 -13.84 16 8 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 10 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 14 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.09 -0.79 2.18 -90.62 -0.20 -0.99 16 19 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 20 C -0.12 -0.88 4.68 -26.73 -0.13 -1.01 16 21 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 22 C -0.11 -0.72 5.20 -26.73 -0.14 -0.86 16 23 C -0.09 -0.61 2.72 -90.62 -0.25 -0.86 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 C -0.15 -0.89 9.19 37.16 0.34 -0.54 16 26 C -0.11 -0.80 4.13 -26.73 -0.11 -0.91 16 27 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 28 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.39 4.13 6.88 -40.82 -0.28 3.85 16 31 H 0.39 6.15 8.49 -40.82 -0.35 5.80 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 37 H 0.06 0.46 6.51 -51.93 -0.34 0.12 16 38 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -31.85 363.06 -9.75 -41.60 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -8.58 Total: 3.15 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.79 Total: -4.23 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.08 Total: -49.51 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.08 Total: -13.06 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.85 -9.75 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454790471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.570 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds