Wall clock time and date at job start Tue Mar 31 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47012 * 2 1 4 4 C 1.53000 * 109.47022 * 240.00228 * 2 1 3 5 5 C 1.53000 * 109.47022 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46999 * 59.99830 * 5 4 2 7 7 C 1.53000 * 109.47372 * 299.99955 * 6 5 4 8 8 C 1.52997 * 109.46999 * 120.00058 * 2 1 3 9 9 H 1.09004 * 109.47233 * 300.00097 * 8 2 1 10 10 N 1.46494 * 109.47356 * 60.00122 * 8 2 1 11 11 C 1.34779 * 120.00447 * 204.99767 * 10 8 2 12 12 O 1.21588 * 119.99635 * 0.02562 * 11 10 8 13 13 N 1.34771 * 120.00489 * 179.97438 * 11 10 8 14 14 C 1.46498 * 120.00000 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46855 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47320 * 60.00008 * 15 14 13 17 17 C 1.52995 * 109.47214 * 299.99817 * 15 14 13 18 18 C 1.50698 * 109.47005 * 179.97438 * 15 14 13 19 19 H 1.08002 * 120.00397 * 4.72228 * 18 15 14 20 20 C 1.37877 * 120.00154 * 184.71354 * 18 15 14 21 21 N 1.31517 * 120.00062 * 152.00075 * 20 18 15 22 22 Si 1.86793 * 120.00128 * 332.00554 * 20 18 15 23 23 H 1.48500 * 109.47435 * 179.97438 * 22 20 18 24 24 H 1.48498 * 109.47175 * 299.99838 * 22 20 18 25 25 H 1.48498 * 109.47415 * 59.99518 * 22 20 18 26 26 H 1.09004 * 109.47207 * 299.99829 * 1 2 3 27 27 H 1.09004 * 109.47305 * 60.00027 * 1 2 3 28 28 H 1.09002 * 109.47529 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47270 * 59.99484 * 4 2 1 30 30 H 1.09000 * 109.47041 * 299.99754 * 4 2 1 31 31 H 1.09000 * 109.47012 * 299.99772 * 5 4 2 32 32 H 1.09001 * 109.47220 * 179.97438 * 5 4 2 33 33 H 1.09006 * 109.46906 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47286 * 60.00110 * 6 5 4 35 35 H 1.09000 * 109.47041 * 300.00305 * 7 6 5 36 36 H 1.09004 * 109.47289 * 180.02562 * 7 6 5 37 37 H 0.97001 * 119.99864 * 24.99778 * 10 8 2 38 38 H 0.97001 * 119.99823 * 0.02562 * 13 11 10 39 39 H 1.08995 * 109.47335 * 60.00120 * 14 13 11 40 40 H 1.09002 * 109.47213 * 299.99800 * 14 13 11 41 41 H 1.08995 * 109.47319 * 173.26000 * 16 15 14 42 42 H 1.09005 * 109.47183 * 293.26724 * 16 15 14 43 43 H 1.09005 * 109.47061 * 53.25878 * 16 15 14 44 44 H 1.08999 * 109.47374 * 292.46104 * 17 15 14 45 45 H 1.09000 * 109.47249 * 52.46291 * 17 15 14 46 46 H 1.09002 * 109.46875 * 172.46430 * 17 15 14 47 47 H 0.97003 * 119.99993 * 354.88889 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4415 -0.0004 7 6 3.5705 -0.7203 1.2489 8 6 2.0400 -0.7213 1.2492 9 1 1.6766 -0.2074 2.1392 10 7 1.5517 -2.1024 1.2492 11 6 1.4230 -2.7718 2.4120 12 8 1.7117 -2.2290 3.4610 13 7 0.9733 -4.0422 2.4120 14 6 0.8329 -4.7695 3.6760 15 6 0.3086 -6.1797 3.3974 16 6 1.2932 -6.9198 2.4898 17 6 -1.0535 -6.0902 2.7065 18 6 0.1648 -6.9280 4.6975 19 1 0.3482 -6.4231 5.6344 20 6 -0.2012 -8.2573 4.6910 21 7 0.1826 -9.0498 5.6679 22 14 -1.2419 -8.9327 3.2946 23 1 -1.4959 -10.3782 3.5208 24 1 -2.5350 -8.2044 3.2439 25 1 -0.5217 -8.7525 2.0085 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6766 -0.2074 -2.1392 30 1 1.6767 -1.7489 -1.2493 31 1 3.9329 0.3072 -1.2498 32 1 3.9333 -1.2348 -2.1394 33 1 5.1705 -1.4415 -0.0009 34 1 3.7175 -2.4693 -0.0002 35 1 3.9334 0.3075 1.2487 36 1 3.9346 -1.2337 2.1389 37 1 1.3210 -2.5353 0.4124 38 1 0.7426 -4.4751 1.5752 39 1 0.1318 -4.2421 4.3227 40 1 1.8034 -4.8337 4.1680 41 1 0.9826 -7.9596 2.3883 42 1 1.3076 -6.4473 1.5076 43 1 2.2910 -6.8796 2.9268 44 1 -1.7879 -5.6844 3.4023 45 1 -0.9776 -5.4375 1.8368 46 1 -1.3655 -7.0849 2.3882 47 1 0.7836 -8.7186 6.3534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457410842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:16 Heat of formation + Delta-G solvation = -52.719015 kcal Electronic energy + Delta-G solvation = -23631.152146 eV Core-core repulsion = 20427.031963 eV Total energy + Delta-G solvation = -3204.120183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.35072 -38.53932 -36.57693 -33.59400 -33.19424 -32.65905 -31.43119 -29.81385 -26.56822 -26.32341 -25.56587 -24.28524 -22.73710 -21.60696 -20.95066 -19.32567 -18.90741 -18.24662 -16.68982 -15.89754 -15.54724 -15.28721 -14.72978 -14.54261 -14.48387 -14.11900 -13.72926 -13.52986 -13.10473 -13.01592 -12.65945 -12.57129 -12.33517 -12.11541 -11.99990 -11.89973 -11.81677 -11.71474 -11.25697 -11.11131 -10.75000 -10.54362 -10.48541 -10.16959 -10.15458 -10.05812 -9.93163 -9.77849 -9.03187 -8.93026 -8.87689 -8.29328 -8.12251 -6.51575 -4.07281 3.08967 3.33595 3.41135 3.61997 3.62764 4.41616 4.47396 4.48535 4.55725 4.67088 4.88693 5.00032 5.15032 5.19606 5.24616 5.27538 5.39673 5.43074 5.58973 5.61806 5.74010 5.82112 5.83425 5.88605 5.98771 6.04933 6.08692 6.11548 6.13513 6.19109 6.23341 6.40415 6.49544 6.58762 6.67128 6.74267 6.76580 6.87692 7.05878 7.29212 7.33374 7.50928 8.14329 8.36558 8.43500 8.87804 9.02463 9.56531 10.85436 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028512 B = 0.003835 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.792377 B = 7300.018289 C = 7429.723206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.082 0.918 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.132 4.132 8 C 0.171 3.829 9 H 0.086 0.914 10 N -0.743 5.743 11 C 0.699 3.301 12 O -0.598 6.598 13 N -0.739 5.739 14 C 0.162 3.838 15 C 0.034 3.966 16 C -0.139 4.139 17 C -0.148 4.148 18 C -0.606 4.606 19 H 0.060 0.940 20 C 0.043 3.957 21 N -0.890 5.890 22 Si 1.050 2.950 23 H -0.300 1.300 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.390 0.610 38 H 0.391 0.609 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.020 0.980 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.027 0.973 46 H 0.040 0.960 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 16.519 -16.653 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.100 0.900 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.171 4.171 8 C 0.066 3.934 9 H 0.104 0.896 10 N -0.400 5.400 11 C 0.398 3.602 12 O -0.477 6.477 13 N -0.394 5.394 14 C 0.039 3.961 15 C 0.032 3.968 16 C -0.197 4.197 17 C -0.205 4.205 18 C -0.643 4.643 19 H 0.078 0.922 20 C -0.164 4.164 21 N -0.522 5.522 22 Si 0.883 3.117 23 H -0.228 1.228 24 H -0.216 1.216 25 H -0.205 1.205 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.225 0.775 38 H 0.225 0.775 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.058 0.942 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.106 15.636 -16.136 22.683 hybrid contribution 0.550 0.948 -0.247 1.124 sum 3.657 16.584 -16.383 23.597 Atomic orbital electron populations 1.21813 0.94697 1.02264 1.01634 1.21427 0.96086 0.99791 0.94437 0.89971 1.21597 0.95734 1.00572 0.97364 1.21547 0.95418 1.00730 0.97966 1.21486 1.00005 0.99820 0.94239 1.21957 0.95749 1.00781 0.98592 1.20711 0.93052 0.81526 0.98148 0.89616 1.45229 1.72412 1.14748 1.07640 1.16070 0.78518 0.81640 0.83929 1.90885 1.57541 1.68629 1.30604 1.45534 1.70087 1.12259 1.11526 1.21337 1.00338 0.91811 0.82591 1.18666 0.90890 0.90880 0.96331 1.22203 1.00122 1.00782 0.96584 1.22346 1.00312 0.99137 0.98683 1.21653 1.54261 0.97096 0.91313 0.92168 1.25655 0.96440 0.93140 1.01161 1.70837 1.30548 1.36590 1.14223 0.84242 0.76950 0.74677 0.75845 1.22754 1.21557 1.20521 0.92494 0.92733 0.92410 0.91800 0.92081 0.92040 0.92144 0.92278 0.91846 0.91492 0.91160 0.77508 0.77527 0.92657 0.92563 0.92644 0.96121 0.93672 0.92810 0.95387 0.94178 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.04 37.16 0.34 -0.88 16 2 C -0.10 -0.80 2.51 -90.62 -0.23 -1.03 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -0.83 5.03 -26.73 -0.13 -0.97 16 5 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 6 C -0.12 -1.09 5.77 -26.73 -0.15 -1.25 16 7 C -0.13 -1.41 5.61 -26.70 -0.15 -1.56 16 8 C 0.17 1.89 2.23 -67.91 -0.15 1.74 16 9 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 10 N -0.74 -9.15 3.55 -58.65 -0.21 -9.35 16 11 C 0.70 11.92 8.53 -86.92 -0.74 11.18 16 12 O -0.60 -12.72 16.01 5.29 0.08 -12.63 16 13 N -0.74 -12.63 4.93 -65.23 -0.32 -12.95 16 14 C 0.16 3.42 4.50 -4.04 -0.02 3.40 16 15 C 0.03 0.76 0.50 -155.66 -0.08 0.68 16 16 C -0.14 -2.93 7.88 37.16 0.29 -2.64 16 17 C -0.15 -3.03 7.45 37.16 0.28 -2.75 16 18 C -0.61 -16.48 8.42 -34.44 -0.29 -16.77 16 19 H 0.06 1.79 7.99 -52.49 -0.42 1.37 16 20 C 0.04 1.21 5.08 -17.82 -0.09 1.12 16 21 N -0.89 -26.74 13.70 55.43 0.76 -25.99 16 22 Si 1.05 24.94 23.32 -169.99 -3.96 20.98 16 23 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -6.51 6.80 56.52 0.38 -6.13 16 25 H -0.28 -6.01 5.62 56.52 0.32 -5.69 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.52 7.44 -51.93 -0.39 0.13 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.45 6.51 -51.93 -0.34 0.11 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.66 7.61 -51.93 -0.39 0.26 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.39 3.95 6.67 -40.82 -0.27 3.68 16 38 H 0.39 5.76 6.23 -40.82 -0.25 5.51 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.05 1.23 4.43 -51.93 -0.23 1.00 16 42 H 0.02 0.35 7.06 -51.93 -0.37 -0.01 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16 45 H 0.03 0.47 6.68 -51.93 -0.35 0.12 16 46 H 0.04 0.84 2.88 -51.93 -0.15 0.69 16 47 H 0.27 8.14 8.73 -40.82 -0.36 7.78 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -30.84 345.13 -8.04 -38.88 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -8.30 Total: 6.63 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -1.29 Total: -10.76 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.23 Total: -48.29 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -3.96 Total: 20.98 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.84 -8.04 -38.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457410842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.842 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds