Wall clock time and date at job start Tue Mar 31 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47640 * 2 1 4 4 C 1.53000 * 109.47333 * 120.00474 * 2 1 3 5 5 C 1.52997 * 109.47333 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47143 * 299.99391 * 5 4 2 7 7 C 1.53000 * 109.47037 * 60.00065 * 6 5 4 8 8 C 1.53003 * 109.47005 * 239.99561 * 2 1 3 9 9 H 1.09006 * 109.46644 * 60.00149 * 8 2 1 10 10 N 1.46492 * 109.47547 * 300.00494 * 8 2 1 11 11 C 1.34779 * 120.00361 * 154.99499 * 10 8 2 12 12 O 1.21584 * 119.99684 * 0.02562 * 11 10 8 13 13 N 1.34778 * 120.00164 * 179.97438 * 11 10 8 14 14 C 1.46500 * 119.99848 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46605 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47216 * 299.99739 * 15 14 13 17 17 C 1.52997 * 109.47306 * 60.00023 * 15 14 13 18 18 C 1.50703 * 109.46511 * 179.97438 * 15 14 13 19 19 H 1.08001 * 120.00305 * 1.34422 * 18 15 14 20 20 C 1.37885 * 119.99925 * 181.34621 * 18 15 14 21 21 N 1.31508 * 120.00272 * 193.97889 * 20 18 15 22 22 Si 1.86798 * 119.99641 * 13.97698 * 20 18 15 23 23 H 1.48494 * 109.47387 * 84.54821 * 22 20 18 24 24 H 1.48504 * 109.46857 * 204.54977 * 22 20 18 25 25 H 1.48501 * 109.47450 * 324.54532 * 22 20 18 26 26 H 1.09002 * 109.46836 * 300.00132 * 1 2 3 27 27 H 1.08997 * 109.47116 * 59.99795 * 1 2 3 28 28 H 1.09003 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47658 * 59.99342 * 4 2 1 30 30 H 1.09002 * 109.46665 * 299.99499 * 4 2 1 31 31 H 1.09002 * 109.47553 * 59.99613 * 5 4 2 32 32 H 1.09006 * 109.47298 * 179.97438 * 5 4 2 33 33 H 1.08997 * 109.47793 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47077 * 300.00513 * 6 5 4 35 35 H 1.09003 * 109.47334 * 60.00172 * 7 6 5 36 36 H 1.09002 * 109.47193 * 180.02562 * 7 6 5 37 37 H 0.97005 * 120.00105 * 334.99206 * 10 8 2 38 38 H 0.97001 * 119.99754 * 0.02562 * 13 11 10 39 39 H 1.08998 * 109.46587 * 299.99901 * 14 13 11 40 40 H 1.08991 * 109.47388 * 60.00148 * 14 13 11 41 41 H 1.08994 * 109.47348 * 69.37175 * 16 15 14 42 42 H 1.09001 * 109.46962 * 189.37236 * 16 15 14 43 43 H 1.09002 * 109.47151 * 309.36716 * 16 15 14 44 44 H 1.09004 * 109.47199 * 60.00098 * 17 15 14 45 45 H 1.09006 * 109.47033 * 179.97438 * 17 15 14 46 46 H 1.08992 * 109.47424 * 299.99568 * 17 15 14 47 47 H 0.96996 * 120.00002 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2488 6 6 4.0795 -1.4435 -0.0004 7 6 3.5695 -0.7223 -1.2496 8 6 2.0400 -0.7214 -1.2492 9 1 1.6766 -0.2075 -2.1392 10 7 1.5516 -2.1025 -1.2493 11 6 1.4228 -2.7718 -2.4120 12 8 1.7123 -2.2293 -3.4609 13 7 0.9739 -4.0426 -2.4120 14 6 0.8345 -4.7702 -3.6758 15 6 0.3099 -6.1802 -3.3972 16 6 1.2937 -6.9201 -2.4887 17 6 -1.0528 -6.0904 -2.7074 18 6 0.1659 -6.9285 -4.6974 19 1 0.4433 -6.4541 -5.6271 20 6 -0.3202 -8.2188 -4.7001 21 7 -0.1929 -8.9673 -5.7739 22 14 -1.1594 -8.9038 -3.1783 23 1 -2.5901 -8.5063 -3.1807 24 1 -1.0572 -10.3853 -3.1812 25 1 -0.4979 -8.3645 -1.9630 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6767 -1.7489 1.2492 30 1 1.6767 -0.2075 2.1392 31 1 3.9338 0.3056 1.2486 32 1 3.9334 -1.2354 2.1391 33 1 5.1694 -1.4436 -0.0009 34 1 3.7157 -2.4711 -0.0001 35 1 3.9332 0.3052 -1.2499 36 1 3.9320 -1.2367 -2.1396 37 1 1.3209 -2.5354 -0.4124 38 1 0.7433 -4.4754 -1.5751 39 1 0.1332 -4.2433 -4.3229 40 1 1.8051 -4.8338 -4.1675 41 1 1.2729 -6.4768 -1.4932 42 1 1.0096 -7.9705 -2.4246 43 1 2.2996 -6.8404 -2.9011 44 1 -1.7537 -5.5633 -3.3547 45 1 -1.4266 -7.0950 -2.5093 46 1 -0.9490 -5.5491 -1.7671 47 1 -0.5351 -9.8749 -5.7758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457410866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:19 Heat of formation + Delta-G solvation = -43.604274 kcal Electronic energy + Delta-G solvation = -23632.818753 eV Core-core repulsion = 20429.093815 eV Total energy + Delta-G solvation = -3203.724938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.34885 -38.54404 -36.63851 -33.58532 -33.16261 -32.65374 -31.45616 -29.82653 -26.57964 -26.36543 -25.63911 -24.74745 -22.74642 -21.60562 -20.97766 -19.33753 -18.90475 -18.20282 -16.09120 -15.83771 -15.56567 -15.39132 -15.06776 -14.55770 -14.37960 -14.08872 -13.70108 -13.53398 -13.17255 -12.99672 -12.87141 -12.57210 -12.33288 -12.19568 -12.10653 -12.03034 -11.87767 -11.71328 -11.26549 -11.10696 -10.74325 -10.48165 -10.40292 -10.28179 -10.15840 -10.14285 -10.04203 -9.74879 -9.11298 -8.92147 -8.66970 -8.46677 -8.27907 -6.13196 -4.10137 3.09372 3.24816 3.31805 3.39322 3.63048 4.36773 4.42078 4.48917 4.56299 4.67385 4.89186 5.00642 5.17702 5.20135 5.25127 5.28216 5.40200 5.43573 5.59476 5.62327 5.74443 5.79070 5.82654 5.89181 5.99328 6.05157 6.07701 6.09469 6.11116 6.19539 6.24094 6.37587 6.48532 6.56344 6.64897 6.73557 6.74863 6.86613 7.03790 7.24565 7.32915 7.46111 7.75145 8.38898 8.50587 8.92528 9.03006 9.50840 10.99995 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028793 B = 0.003835 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.209251 B = 7298.551836 C = 7411.905223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.082 0.918 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.132 4.132 8 C 0.171 3.829 9 H 0.086 0.914 10 N -0.744 5.744 11 C 0.699 3.301 12 O -0.596 6.596 13 N -0.740 5.740 14 C 0.161 3.839 15 C 0.028 3.972 16 C -0.140 4.140 17 C -0.146 4.146 18 C -0.512 4.512 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.892 5.892 22 Si 0.886 3.114 23 H -0.286 1.286 24 H -0.306 1.306 25 H -0.250 1.250 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.390 0.610 38 H 0.390 0.610 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.021 0.979 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.040 0.960 46 H 0.028 0.972 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 16.254 16.977 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.100 0.900 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.171 4.171 8 C 0.066 3.934 9 H 0.104 0.896 10 N -0.401 5.401 11 C 0.399 3.601 12 O -0.475 6.475 13 N -0.394 5.394 14 C 0.038 3.962 15 C 0.027 3.973 16 C -0.197 4.197 17 C -0.203 4.203 18 C -0.550 4.550 19 H 0.095 0.905 20 C -0.127 4.127 21 N -0.528 5.528 22 Si 0.719 3.281 23 H -0.214 1.214 24 H -0.234 1.234 25 H -0.176 1.176 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.225 0.775 38 H 0.224 0.776 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.047 0.953 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.462 16.563 15.861 23.362 hybrid contribution -0.787 -0.975 1.504 1.957 sum 3.676 15.587 17.365 23.622 Atomic orbital electron populations 1.21810 0.94705 1.02254 1.01636 1.21427 0.96079 0.99795 0.94442 0.89972 1.21597 0.95740 1.00561 0.97372 1.21548 0.95413 1.00735 0.97972 1.21485 1.00009 0.99814 0.94231 1.21943 0.95746 1.00787 0.98607 1.20698 0.93063 0.81526 0.98147 0.89583 1.45234 1.72427 1.14756 1.07644 1.16055 0.78524 0.81615 0.83930 1.90890 1.57436 1.68611 1.30573 1.45500 1.70208 1.12251 1.11483 1.21339 1.00648 0.91520 0.82650 1.18730 0.91162 0.91301 0.96122 1.22274 1.00021 1.00880 0.96565 1.22340 0.99919 0.99601 0.98393 1.20728 1.44282 0.98126 0.91849 0.90528 1.24971 0.95495 0.96334 0.95933 1.69950 1.44936 1.08560 1.29382 0.87290 0.80004 0.76002 0.84832 1.21406 1.23449 1.17573 0.92763 0.92469 0.92419 0.92095 0.91822 0.92049 0.92166 0.92275 0.91836 0.91501 0.91101 0.77528 0.77577 0.92308 0.92198 0.96049 0.92640 0.93439 0.92830 0.94160 0.95264 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.04 37.16 0.34 -0.87 16 2 C -0.10 -0.79 2.52 -90.62 -0.23 -1.02 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -0.82 5.03 -26.73 -0.13 -0.96 16 5 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 6 C -0.12 -1.07 5.77 -26.73 -0.15 -1.23 16 7 C -0.13 -1.39 5.60 -26.76 -0.15 -1.54 16 8 C 0.17 1.86 2.23 -67.96 -0.15 1.71 16 9 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 10 N -0.74 -8.98 3.54 -58.70 -0.21 -9.19 16 11 C 0.70 11.68 8.53 -86.91 -0.74 10.94 16 12 O -0.60 -12.46 16.01 5.29 0.08 -12.38 16 13 N -0.74 -12.32 5.01 -65.23 -0.33 -12.65 16 14 C 0.16 3.30 4.49 -4.04 -0.02 3.29 16 15 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 16 C -0.14 -2.86 7.53 37.16 0.28 -2.58 16 17 C -0.15 -2.96 7.52 37.16 0.28 -2.68 16 18 C -0.51 -13.84 8.62 -34.44 -0.30 -14.14 16 19 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 20 C 0.08 2.10 5.32 -17.82 -0.09 2.00 16 21 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 22 Si 0.89 21.16 22.79 -169.99 -3.87 17.29 16 23 H -0.29 -6.82 7.10 56.52 0.40 -6.42 16 24 H -0.31 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.25 -5.42 4.65 56.52 0.26 -5.15 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 29 H 0.06 0.44 6.50 -51.93 -0.34 0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.65 7.60 -51.93 -0.39 0.25 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.39 3.87 6.67 -40.82 -0.27 3.60 16 38 H 0.39 5.62 6.27 -40.82 -0.26 5.36 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 42 H 0.05 1.21 4.30 -51.93 -0.22 0.98 16 43 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 46 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -31.00 343.50 -7.98 -38.98 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -8.30 Total: 6.34 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.31 Total: -7.56 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.24 Total: -47.83 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.08 Total: -12.38 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -3.87 Total: 17.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.00 -7.98 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457410866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.627 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds