Wall clock time and date at job start Tue Mar 31 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 C 1.52996 * 109.46969 * 119.99840 * 2 1 3 5 5 C 1.53002 * 109.46972 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.46817 * 299.99733 * 5 4 2 7 7 C 1.53006 * 109.47127 * 60.00361 * 6 5 4 8 8 C 1.52997 * 109.47143 * 239.99770 * 2 1 3 9 9 H 1.08993 * 109.47194 * 300.00323 * 8 2 1 10 10 N 1.46506 * 109.46949 * 60.00195 * 8 2 1 11 11 C 1.34781 * 119.99773 * 205.00145 * 10 8 2 12 12 O 1.21587 * 119.99748 * 359.97438 * 11 10 8 13 13 N 1.34774 * 119.99942 * 179.97438 * 11 10 8 14 14 C 1.46498 * 119.99861 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46853 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47275 * 299.99692 * 15 14 13 17 17 C 1.53002 * 109.47334 * 60.00005 * 15 14 13 18 18 C 1.50702 * 109.46948 * 180.02562 * 15 14 13 19 19 H 1.07998 * 120.00273 * 359.97438 * 18 15 14 20 20 C 1.37875 * 120.00072 * 180.02562 * 18 15 14 21 21 N 1.31520 * 120.00064 * 359.97438 * 20 18 15 22 22 Si 1.86808 * 120.00199 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.46702 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46953 * 120.00121 * 22 20 18 25 25 H 1.48495 * 109.46881 * 240.00120 * 22 20 18 26 26 H 1.09000 * 109.47312 * 300.00221 * 1 2 3 27 27 H 1.09002 * 109.47593 * 60.00252 * 1 2 3 28 28 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47452 * 59.99938 * 4 2 1 30 30 H 1.09000 * 109.47054 * 300.00097 * 4 2 1 31 31 H 1.09002 * 109.47070 * 179.97438 * 5 4 2 32 32 H 1.08996 * 109.47407 * 59.99513 * 5 4 2 33 33 H 1.09001 * 109.47502 * 300.00518 * 6 5 4 34 34 H 1.09001 * 109.47289 * 180.02562 * 6 5 4 35 35 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 36 36 H 1.09000 * 109.47050 * 179.97438 * 7 6 5 37 37 H 0.96996 * 120.00068 * 24.99278 * 10 8 2 38 38 H 0.96996 * 119.99898 * 359.97438 * 13 11 10 39 39 H 1.08998 * 109.46951 * 299.99817 * 14 13 11 40 40 H 1.08997 * 109.47036 * 59.99815 * 14 13 11 41 41 H 1.09002 * 109.47034 * 60.00031 * 16 15 14 42 42 H 1.08997 * 109.47617 * 180.02562 * 16 15 14 43 43 H 1.08997 * 109.47276 * 300.00484 * 16 15 14 44 44 H 1.09003 * 109.46757 * 59.99884 * 17 15 14 45 45 H 1.08995 * 109.47143 * 179.97438 * 17 15 14 46 46 H 1.09002 * 109.46829 * 299.99880 * 17 15 14 47 47 H 0.97001 * 119.99731 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7206 1.2496 6 6 4.0804 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2489 8 6 2.0400 -0.7213 -1.2492 9 1 1.6767 -1.7489 -1.2492 10 7 1.5517 -0.0306 -2.4454 11 6 1.4229 -0.7031 -3.6064 12 8 1.7125 -1.8827 -3.6610 13 7 0.9732 -0.0679 -4.7067 14 6 0.8338 -0.7987 -5.9687 15 6 0.3081 0.1472 -7.0503 16 6 -1.0548 0.6987 -6.6271 17 6 1.2910 1.3049 -7.2372 18 6 0.1641 -0.6046 -8.3484 19 1 0.4222 -1.6522 -8.3972 20 6 -0.2960 0.0451 -9.4741 21 7 -0.6098 1.3210 -9.4148 22 14 -0.4739 -0.8867 -11.0834 23 1 -0.0590 -2.2988 -10.8861 24 1 -1.8908 -0.8447 -11.5256 25 1 0.3863 -0.2573 -12.1173 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6767 -1.7488 1.2493 30 1 1.6766 -0.2073 2.1392 31 1 3.9333 -1.2341 2.1398 32 1 3.9330 0.3071 1.2497 33 1 3.7174 -2.4694 0.0001 34 1 5.1704 -1.4417 0.0008 35 1 3.9335 0.3073 -1.2488 36 1 3.9345 -1.2338 -2.1389 37 1 1.3209 0.9105 -2.4018 38 1 0.7419 0.8731 -4.6630 39 1 1.8047 -1.1919 -6.2700 40 1 0.1333 -1.6230 -5.8357 41 1 -0.9511 1.2423 -5.6881 42 1 -1.4296 1.3722 -7.3978 43 1 -1.7550 -0.1260 -6.4940 44 1 2.2620 0.9119 -7.5387 45 1 0.9167 1.9784 -8.0080 46 1 1.3947 1.8485 -6.2981 47 1 -0.9332 1.7781 -10.2069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457410868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:21 Heat of formation + Delta-G solvation = -67.268436 kcal Electronic energy + Delta-G solvation = -23200.559086 eV Core-core repulsion = 19995.807993 eV Total energy + Delta-G solvation = -3204.751093 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.05755 -38.44949 -36.32249 -33.96141 -33.16358 -32.56367 -30.87164 -29.31835 -26.44229 -25.69430 -25.48803 -24.68278 -22.60242 -21.40051 -20.42470 -20.05173 -18.73341 -17.92152 -16.31807 -15.79047 -15.08676 -14.80778 -14.73718 -14.58894 -14.35677 -13.96056 -13.69532 -13.42874 -12.93289 -12.81421 -12.77167 -12.48316 -12.14039 -12.06075 -11.72179 -11.39860 -11.29729 -11.17723 -11.05011 -10.86230 -10.71031 -10.64023 -10.58248 -10.34959 -10.26899 -10.18204 -9.67058 -9.59864 -9.26758 -8.84439 -8.75196 -8.39111 -8.12796 -6.00050 -4.09728 3.16390 3.28714 3.37291 3.42722 3.71981 4.40523 4.45832 4.53640 4.64645 4.85044 4.91898 5.05400 5.24499 5.26830 5.30096 5.32524 5.37483 5.54413 5.57281 5.72434 5.84566 5.86395 5.96457 6.00243 6.02295 6.13480 6.20408 6.28280 6.33873 6.40902 6.54547 6.80102 6.84451 6.86037 6.95507 7.06569 7.15744 7.36630 7.48435 7.58968 7.72503 8.04169 8.15678 8.41506 8.56645 8.90728 9.13381 9.56026 11.01405 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037586 B = 0.003239 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.776860 B = 8641.252522 C = 8906.505391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.131 4.131 8 C 0.172 3.828 9 H 0.085 0.915 10 N -0.749 5.749 11 C 0.698 3.302 12 O -0.600 6.600 13 N -0.734 5.734 14 C 0.151 3.849 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.504 4.504 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.391 0.609 38 H 0.392 0.608 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.005 0.995 42 H 0.084 0.916 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.084 0.916 46 H 0.005 0.995 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 1.286 19.855 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.170 4.170 8 C 0.066 3.934 9 H 0.104 0.896 10 N -0.404 5.404 11 C 0.398 3.602 12 O -0.479 6.479 13 N -0.389 5.389 14 C 0.028 3.972 15 C 0.055 3.945 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.543 4.543 19 H 0.076 0.924 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.224 0.776 38 H 0.227 0.773 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.024 0.976 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.958 0.314 19.628 20.247 hybrid contribution -0.308 0.477 -0.913 1.075 sum 4.650 0.790 18.715 19.301 Atomic orbital electron populations 1.21818 0.94689 1.02225 1.01676 1.21404 0.96090 0.99853 0.94371 0.90878 1.21550 0.95543 1.00897 0.96853 1.21569 0.95569 1.00785 0.97905 1.21497 1.00229 0.99655 0.94107 1.21969 0.95787 1.00802 0.98434 1.20746 0.92959 0.97153 0.82533 0.89648 1.45211 1.72651 1.13370 1.09177 1.16089 0.78568 0.85188 0.80386 1.90871 1.57750 1.14577 1.84743 1.45509 1.69618 1.13974 1.09769 1.21553 0.99926 0.94924 0.80798 1.18362 0.92129 0.92140 0.91866 1.21811 0.98656 1.00076 0.98149 1.21812 0.98173 0.99767 0.98946 1.21043 1.43573 0.96314 0.93337 0.92362 1.24883 0.95055 0.94884 0.98740 1.69821 1.44894 1.08907 1.28917 0.86520 0.77623 0.80207 0.83577 1.19732 1.21092 1.21087 0.92765 0.92298 0.92556 0.91656 0.91713 0.92043 0.92023 0.91773 0.91964 0.92112 0.91176 0.77567 0.77305 0.93068 0.93066 0.97566 0.89690 0.95495 0.95500 0.89688 0.97560 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.04 37.16 0.34 -0.99 16 2 C -0.10 -0.87 2.30 -90.62 -0.21 -1.08 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 5 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 6 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 7 C -0.13 -1.49 5.50 -26.71 -0.15 -1.64 16 8 C 0.17 2.04 1.90 -67.91 -0.13 1.91 16 9 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 10 N -0.75 -9.94 4.39 -58.65 -0.26 -10.19 16 11 C 0.70 12.59 8.53 -86.92 -0.74 11.85 16 12 O -0.60 -13.21 16.01 5.29 0.08 -13.12 16 13 N -0.73 -13.43 4.96 -65.23 -0.32 -13.75 16 14 C 0.15 3.30 4.50 -4.04 -0.02 3.29 16 15 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 16 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 17 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 18 C -0.50 -13.36 8.01 -34.44 -0.28 -13.64 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.89 -23.77 9.35 55.43 0.52 -23.25 16 22 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.39 4.23 8.40 -40.82 -0.34 3.89 16 38 H 0.39 6.44 6.18 -40.82 -0.25 6.19 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 42 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 47 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -28.99 357.84 -9.42 -38.41 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -8.60 Total: 6.68 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -1.21 Total: -6.02 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.06 Total: -47.20 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.99 -9.42 -38.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457410868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.860 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds