Wall clock time and date at job start Tue Mar 31 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.53006 * 109.46711 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47445 * 59.99695 * 5 4 2 7 7 C 1.53002 * 109.47092 * 300.00075 * 6 5 4 8 8 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 9 9 H 1.08992 * 109.47399 * 59.99823 * 8 2 1 10 10 N 1.46500 * 109.47023 * 299.99760 * 8 2 1 11 11 C 1.34777 * 120.00075 * 155.00453 * 10 8 2 12 12 O 1.21587 * 119.99681 * 359.97438 * 11 10 8 13 13 N 1.34775 * 120.00044 * 180.02562 * 11 10 8 14 14 C 1.46500 * 119.99839 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46984 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47542 * 300.00083 * 15 14 13 17 17 C 1.52999 * 109.47223 * 60.00365 * 15 14 13 18 18 C 1.50708 * 109.47160 * 180.02562 * 15 14 13 19 19 H 1.07999 * 119.99471 * 359.97438 * 18 15 14 20 20 C 1.37875 * 120.00181 * 180.02562 * 18 15 14 21 21 N 1.31513 * 119.99970 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 120.00184 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.46856 * 59.99713 * 22 20 18 24 24 H 1.48498 * 109.47382 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47023 * 300.00098 * 22 20 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 28 28 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 29 29 H 1.09002 * 109.47075 * 299.99262 * 4 2 1 30 30 H 1.08996 * 109.47407 * 60.00219 * 4 2 1 31 31 H 1.09001 * 109.46726 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.46589 * 299.99365 * 5 4 2 33 33 H 1.09002 * 109.47045 * 59.99942 * 6 5 4 34 34 H 1.09000 * 109.47140 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.46497 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47067 * 299.99853 * 7 6 5 37 37 H 0.97006 * 120.00223 * 335.00118 * 10 8 2 38 38 H 0.96997 * 120.00305 * 359.97438 * 13 11 10 39 39 H 1.08992 * 109.47227 * 300.00069 * 14 13 11 40 40 H 1.09008 * 109.47211 * 59.99737 * 14 13 11 41 41 H 1.08998 * 109.47196 * 59.99439 * 16 15 14 42 42 H 1.08997 * 109.47599 * 180.02562 * 16 15 14 43 43 H 1.09008 * 109.46780 * 300.00102 * 16 15 14 44 44 H 1.08996 * 109.47538 * 59.99516 * 17 15 14 45 45 H 1.08998 * 109.47395 * 179.97438 * 17 15 14 46 46 H 1.09003 * 109.46798 * 299.99935 * 17 15 14 47 47 H 0.97001 * 120.00359 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4433 0.0002 7 6 3.5695 -0.7221 1.2495 8 6 2.0400 -0.7213 1.2492 9 1 1.6766 -1.7489 1.2492 10 7 1.5517 -0.0307 2.4454 11 6 1.4230 -0.7031 3.6064 12 8 1.7118 -1.8829 3.6608 13 7 0.9733 -0.0679 4.7067 14 6 0.8329 -0.7989 5.9685 15 6 0.3087 0.1474 7.0504 16 6 1.2931 1.3035 7.2377 17 6 -1.0536 0.7009 6.6275 18 6 0.1648 -0.6044 8.3487 19 1 0.4213 -1.6524 8.3970 20 6 -0.2951 0.0454 9.4743 21 7 -0.6079 1.3214 9.4153 22 14 -0.4740 -0.8866 11.0833 23 1 0.8482 -1.4235 11.4940 24 1 -0.9828 0.0318 12.1335 25 1 -1.4292 -2.0090 10.9015 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 1.6766 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1393 31 1 3.9332 -1.2360 -2.1388 32 1 3.9336 0.3058 -1.2488 33 1 3.7158 -2.4709 0.0000 34 1 5.1695 -1.4441 0.0002 35 1 3.9329 -1.2360 2.1394 36 1 3.9332 0.3055 1.2497 37 1 1.3210 0.9105 2.4019 38 1 0.7426 0.8733 4.6632 39 1 0.1319 -1.6227 5.8351 40 1 1.8035 -1.1929 6.2701 41 1 1.3976 1.8473 6.2988 42 1 0.9199 1.9774 8.0088 43 1 2.2636 0.9091 7.5390 44 1 -1.7549 -0.1227 6.4942 45 1 -1.4273 1.3747 7.3985 46 1 -0.9491 1.2448 5.6887 47 1 -0.9311 1.7787 10.2074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457410870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:24 Heat of formation + Delta-G solvation = -67.193503 kcal Electronic energy + Delta-G solvation = -23200.941964 eV Core-core repulsion = 19996.194120 eV Total energy + Delta-G solvation = -3204.747844 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.05981 -38.45018 -36.32105 -33.96135 -33.16282 -32.56524 -30.87196 -29.31981 -26.44283 -25.69258 -25.48566 -24.68053 -22.60148 -21.40197 -20.42367 -20.05063 -18.73159 -17.92078 -16.31897 -15.78405 -15.08637 -14.80730 -14.74005 -14.58834 -14.35855 -13.95967 -13.69730 -13.43058 -12.92901 -12.81370 -12.77044 -12.48295 -12.13810 -12.06067 -11.72194 -11.39364 -11.29126 -11.16280 -11.05044 -10.82942 -10.71044 -10.70598 -10.58307 -10.34347 -10.26860 -10.18137 -9.67093 -9.59448 -9.26618 -8.84460 -8.76638 -8.38220 -8.12715 -5.99592 -4.09496 3.16371 3.32021 3.36004 3.40392 3.72021 4.40627 4.45781 4.53668 4.64733 4.85097 4.91895 5.05371 5.24516 5.27076 5.30068 5.32531 5.37734 5.54455 5.57344 5.72419 5.84580 5.86432 5.96446 6.00304 6.02342 6.13538 6.20451 6.28369 6.33902 6.40970 6.54667 6.80145 6.84521 6.86158 6.95622 7.06718 7.15784 7.36713 7.48445 7.59108 7.72377 8.04348 8.15692 8.41664 8.56686 8.90412 9.13408 9.56112 11.01813 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037588 B = 0.003240 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.747619 B = 8640.763212 C = 8905.973193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.131 4.131 8 C 0.172 3.828 9 H 0.085 0.915 10 N -0.749 5.749 11 C 0.698 3.302 12 O -0.600 6.600 13 N -0.734 5.734 14 C 0.151 3.849 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.506 4.506 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.391 0.609 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.005 0.995 42 H 0.084 0.916 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.084 0.916 46 H 0.005 0.995 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.760 1.312 -19.833 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.170 4.170 8 C 0.066 3.934 9 H 0.103 0.897 10 N -0.404 5.404 11 C 0.398 3.602 12 O -0.479 6.479 13 N -0.389 5.389 14 C 0.028 3.972 15 C 0.056 3.944 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.545 4.545 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.526 5.526 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.224 0.776 38 H 0.227 0.773 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.024 0.976 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.936 0.349 -19.603 20.218 hybrid contribution -0.299 0.448 0.907 1.055 sum 4.637 0.797 -18.696 19.279 Atomic orbital electron populations 1.21815 0.94686 1.02228 1.01677 1.21403 0.96091 0.99852 0.94364 0.90877 1.21553 0.95544 1.00895 0.96854 1.21571 0.95573 1.00779 0.97908 1.21496 1.00234 0.99651 0.94106 1.21954 0.95796 1.00805 0.98442 1.20726 0.92971 0.97156 0.82539 0.89661 1.45211 1.72656 1.13372 1.09170 1.16087 0.78567 0.85190 0.80386 1.90871 1.57771 1.14557 1.84746 1.45508 1.69621 1.13954 1.09785 1.21553 0.99924 0.94922 0.80806 1.18350 0.92126 0.92128 0.91821 1.21813 0.98171 0.99766 0.98941 1.21813 0.98658 1.00077 0.98151 1.20968 1.43864 0.96239 0.93379 0.92471 1.24874 0.95022 0.94885 0.98718 1.69796 1.44750 1.08885 1.29127 0.86632 0.78519 0.79651 0.83050 1.20281 1.21359 1.20277 0.92556 0.92303 0.92758 0.91662 0.91704 0.92042 0.92019 0.91774 0.91961 0.91172 0.92116 0.77565 0.77303 0.93066 0.93073 0.97568 0.89692 0.95502 0.95499 0.89687 0.97565 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.04 37.16 0.34 -0.99 16 2 C -0.10 -0.87 2.30 -90.62 -0.21 -1.08 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 5 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 6 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 7 C -0.13 -1.49 5.49 -26.75 -0.15 -1.64 16 8 C 0.17 2.04 1.90 -67.95 -0.13 1.91 16 9 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 10 N -0.75 -9.94 4.39 -58.70 -0.26 -10.20 16 11 C 0.70 12.60 8.53 -86.92 -0.74 11.86 16 12 O -0.60 -13.21 16.01 5.29 0.08 -13.12 16 13 N -0.73 -13.44 4.96 -65.23 -0.32 -13.76 16 14 C 0.15 3.30 4.50 -4.04 -0.02 3.29 16 15 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 16 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 17 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 18 C -0.51 -13.42 8.01 -34.44 -0.28 -13.70 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 21 N -0.89 -23.80 9.35 55.43 0.52 -23.28 16 22 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.39 4.24 8.40 -40.82 -0.34 3.89 16 38 H 0.39 6.44 6.18 -40.82 -0.25 6.19 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.18 8.14 -51.92 -0.42 0.76 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 42 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 43 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 47 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -28.97 357.84 -9.42 -38.38 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -8.60 Total: 6.75 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.21 Total: -6.04 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.06 Total: -47.24 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.97 -9.42 -38.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457410870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.811 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds