Wall clock time and date at job start Tue Mar 31 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46805 * 2 1 4 4 C 1.53001 * 109.47190 * 119.99497 * 2 1 3 5 5 C 1.53000 * 109.47272 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.46754 * 299.99914 * 5 4 2 7 7 C 1.52997 * 109.47158 * 60.00386 * 6 5 4 8 8 H 1.09002 * 109.47243 * 59.99788 * 7 6 5 9 9 N 1.46502 * 109.47179 * 179.97438 * 7 6 5 10 10 C 1.34785 * 119.99759 * 274.99781 * 9 7 6 11 11 O 1.21584 * 119.99731 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99886 * 180.02562 * 10 9 7 13 13 C 1.46508 * 119.99938 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.46968 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46870 * 299.99169 * 14 13 12 16 16 C 1.52994 * 109.47495 * 59.99660 * 14 13 12 17 17 C 1.50699 * 109.46799 * 179.97438 * 14 13 12 18 18 H 1.08002 * 120.00073 * 357.00007 * 17 14 13 19 19 C 1.37879 * 119.99983 * 177.00368 * 17 14 13 20 20 N 1.31514 * 119.99862 * 5.53861 * 19 17 14 21 21 Si 1.86798 * 120.00126 * 185.53547 * 19 17 14 22 22 H 1.48506 * 109.46980 * 85.00139 * 21 19 17 23 23 H 1.48495 * 109.47436 * 204.99939 * 21 19 17 24 24 H 1.48499 * 109.47172 * 325.00337 * 21 19 17 25 25 C 1.52995 * 109.47394 * 239.99997 * 2 1 3 26 26 H 1.09000 * 109.46433 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47190 * 300.00172 * 1 2 3 28 28 H 1.09000 * 109.46637 * 60.00149 * 1 2 3 29 29 H 1.09002 * 109.46941 * 60.00032 * 4 2 1 30 30 H 1.09003 * 109.47171 * 300.00264 * 4 2 1 31 31 H 1.09000 * 109.46718 * 180.02562 * 5 4 2 32 32 H 1.08996 * 109.47016 * 59.99792 * 5 4 2 33 33 H 1.09005 * 109.46970 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47712 * 299.99581 * 6 5 4 35 35 H 0.96996 * 120.00737 * 94.99963 * 9 7 6 36 36 H 0.96997 * 120.00388 * 359.97438 * 12 10 9 37 37 H 1.09001 * 109.46476 * 299.99678 * 13 12 10 38 38 H 1.08995 * 109.47029 * 59.99425 * 13 12 10 39 39 H 1.09000 * 109.47322 * 53.93887 * 15 14 13 40 40 H 1.08999 * 109.47422 * 173.93544 * 15 14 13 41 41 H 1.09000 * 109.47777 * 293.93764 * 15 14 13 42 42 H 1.08996 * 109.47220 * 59.99972 * 16 14 13 43 43 H 1.08998 * 109.47298 * 180.02562 * 16 14 13 44 44 H 1.09007 * 109.47016 * 299.99404 * 16 14 13 45 45 H 0.96998 * 120.00004 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.47379 * 59.99563 * 25 2 1 47 47 H 1.09002 * 109.46694 * 299.99941 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5701 -0.7206 1.2496 6 6 4.0805 -1.4416 0.0005 7 6 3.5706 -0.7204 -1.2488 8 1 3.9336 0.3074 -1.2486 9 7 4.0598 -1.4105 -2.4449 10 6 5.2819 -1.1237 -2.9358 11 8 5.9779 -0.2919 -2.3862 12 7 5.7318 -1.7581 -4.0365 13 6 7.0604 -1.4467 -4.5699 14 6 7.3239 -2.2999 -5.8123 15 6 7.2597 -3.7816 -5.4364 16 6 6.2644 -1.9965 -6.8735 17 6 8.6902 -1.9791 -6.3612 18 1 9.2890 -1.2066 -5.9018 19 6 9.1758 -2.6719 -7.4499 20 7 8.4065 -3.5352 -8.0764 21 14 10.9263 -2.3843 -8.0350 22 1 11.8559 -3.2406 -7.2551 23 1 11.0292 -2.7270 -9.4762 24 1 11.2857 -0.9569 -7.8386 25 6 2.0401 -0.7212 -1.2492 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.6767 -1.7488 1.2494 30 1 1.6767 -0.2073 2.1393 31 1 3.9333 -1.2348 2.1395 32 1 3.9330 0.3072 1.2498 33 1 5.1706 -1.4416 0.0009 34 1 3.7176 -2.4694 0.0003 35 1 3.5044 -2.0737 -2.8836 36 1 5.1764 -2.4213 -4.4752 37 1 7.1062 -0.3910 -4.8371 38 1 7.8152 -1.6633 -3.8140 39 1 6.3114 -3.9901 -4.9412 40 1 7.3400 -4.3890 -6.3379 41 1 8.0820 -4.0215 -4.7623 42 1 6.3102 -0.9409 -7.1412 43 1 6.4519 -2.6046 -7.7584 44 1 5.2759 -2.2283 -6.4766 45 1 8.7480 -4.0223 -8.8426 46 1 1.6768 -0.2075 -2.1392 47 1 1.6768 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457833567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:19 Heat of formation + Delta-G solvation = -68.605336 kcal Electronic energy + Delta-G solvation = -22921.918102 eV Core-core repulsion = 19717.109037 eV Total energy + Delta-G solvation = -3204.809066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.96804 -38.51081 -36.37127 -34.21690 -33.20985 -32.29159 -30.87969 -29.24332 -26.58074 -25.69847 -25.52523 -24.73370 -22.49652 -21.63962 -20.34798 -19.94895 -18.72610 -17.97967 -16.11091 -15.78902 -15.27572 -14.98312 -14.75640 -14.56964 -14.37910 -14.00630 -13.69262 -13.45849 -12.95439 -12.81562 -12.67653 -12.59459 -12.14157 -12.02341 -11.74075 -11.41980 -11.32952 -11.16325 -11.10702 -10.84007 -10.77314 -10.67371 -10.52092 -10.35386 -10.32751 -10.19155 -9.67906 -9.58967 -9.27175 -8.87231 -8.76595 -8.38098 -8.13406 -6.00346 -4.08846 3.14329 3.30726 3.37016 3.41270 3.70831 4.40621 4.45922 4.55176 4.57577 4.84778 4.94273 5.00057 5.24186 5.26862 5.28719 5.29964 5.39710 5.47142 5.50470 5.60279 5.73299 5.83887 5.94436 5.97895 6.04187 6.11124 6.20219 6.27697 6.32604 6.40739 6.54636 6.78859 6.84415 6.85559 6.94834 7.06425 7.15097 7.36310 7.47667 7.58995 7.73017 8.02627 8.14952 8.41097 8.55888 8.90932 9.12324 9.56403 11.01768 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041450 B = 0.002997 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.355810 B = 9341.371468 C = 9602.444801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.131 4.131 7 C 0.166 3.834 8 H 0.085 0.915 9 N -0.751 5.751 10 C 0.698 3.302 11 O -0.600 6.600 12 N -0.734 5.734 13 C 0.151 3.849 14 C 0.056 3.944 15 C -0.128 4.128 16 C -0.129 4.129 17 C -0.507 4.507 18 H 0.058 0.942 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.275 1.275 25 C -0.121 4.121 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.392 0.608 36 H 0.393 0.607 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.006 0.994 40 H 0.080 0.920 41 H 0.029 0.971 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.005 0.995 45 H 0.259 0.741 46 H 0.068 0.932 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.670 2.311 14.144 21.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.169 4.169 7 C 0.061 3.939 8 H 0.103 0.897 9 N -0.406 5.406 10 C 0.397 3.603 11 O -0.479 6.479 12 N -0.389 5.389 13 C 0.028 3.972 14 C 0.055 3.945 15 C -0.186 4.186 16 C -0.187 4.187 17 C -0.545 4.545 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.200 1.200 25 C -0.159 4.159 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.225 0.775 36 H 0.227 0.773 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.025 0.975 40 H 0.099 0.901 41 H 0.048 0.952 42 H 0.045 0.955 43 H 0.103 0.897 44 H 0.024 0.976 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.972 2.964 14.454 21.021 hybrid contribution 0.465 -0.575 -0.786 1.079 sum -14.507 2.389 13.668 20.074 Atomic orbital electron populations 1.21822 0.95079 1.01798 1.01681 1.21079 0.95429 0.99850 0.94426 0.90913 1.21631 0.95708 1.00599 0.97293 1.21493 0.95254 1.01098 0.97661 1.21958 1.01646 0.99253 0.94090 1.20711 0.92618 0.97120 0.83468 0.89685 1.45229 1.17726 1.46274 1.31401 1.16098 0.81401 0.81729 0.81036 1.90871 1.57359 1.37340 1.62345 1.45523 1.20734 1.44100 1.28512 1.21549 0.79937 0.99404 0.96324 1.18354 0.95408 0.91438 0.89254 1.21792 0.96106 0.99574 1.01079 1.21835 0.94577 1.00017 1.02251 1.20983 1.00127 1.19756 1.13645 0.92417 1.24875 0.97420 0.95114 0.96045 1.69829 1.35166 1.26782 1.20672 0.86598 0.85070 0.78643 0.77625 1.20637 1.21361 1.19960 1.21878 0.94414 1.01276 0.98323 0.92700 0.92680 0.92640 0.91972 0.92047 0.91902 0.91753 0.91223 0.92114 0.77541 0.77270 0.93049 0.93029 0.97504 0.90099 0.95226 0.95483 0.89673 0.97631 0.93051 0.91343 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 2 C -0.09 -0.69 2.72 -90.62 -0.25 -0.94 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.11 -0.88 5.20 -26.73 -0.14 -1.02 16 5 C -0.12 -1.08 5.92 -26.73 -0.16 -1.23 16 6 C -0.13 -1.48 5.49 -26.74 -0.15 -1.63 16 7 C 0.17 1.98 2.46 -67.91 -0.17 1.81 16 8 H 0.09 1.21 7.57 -51.93 -0.39 0.81 16 9 N -0.75 -10.06 5.08 -58.65 -0.30 -10.36 16 10 C 0.70 12.68 8.53 -86.91 -0.74 11.94 16 11 O -0.60 -13.25 16.00 5.29 0.08 -13.17 16 12 N -0.73 -13.48 4.91 -65.22 -0.32 -13.80 16 13 C 0.15 3.30 4.50 -4.04 -0.02 3.29 16 14 C 0.06 1.32 0.50 -155.67 -0.08 1.24 16 15 C -0.13 -2.91 8.03 37.16 0.30 -2.61 16 16 C -0.13 -2.94 8.10 37.15 0.30 -2.64 16 17 C -0.51 -13.44 8.01 -34.44 -0.28 -13.72 16 18 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 19 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 20 N -0.89 -23.80 9.45 55.43 0.52 -23.28 16 21 Si 0.89 20.92 29.54 -169.99 -5.02 15.89 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.12 -1.07 4.68 -26.71 -0.12 -1.19 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.39 4.22 8.62 -40.82 -0.35 3.87 16 36 H 0.39 6.45 6.17 -40.82 -0.25 6.20 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 40 H 0.08 2.01 6.25 -51.93 -0.32 1.69 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 2.14 6.10 -51.93 -0.32 1.82 16 44 H 0.00 0.10 6.86 -51.92 -0.36 -0.26 16 45 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -29.13 359.41 -9.51 -38.65 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -8.65 Total: 6.30 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.25 Total: -5.65 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.09 Total: -47.44 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.13 -9.51 -38.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457833567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.960 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds