Wall clock time and date at job start Tue Mar 31 2020 06:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.00979 * 2 1 4 4 C 1.54316 * 109.88921 * 121.11409 * 2 1 3 5 5 C 1.55141 * 103.02134 * 141.68883 * 4 2 1 6 6 C 1.54915 * 101.65041 * 324.34904 * 5 4 2 7 7 H 1.08999 * 110.37147 * 278.23497 * 6 5 4 8 8 C 1.52996 * 110.37118 * 155.89924 * 6 5 4 9 9 N 1.47437 * 109.88660 * 238.88585 * 2 1 3 10 10 C 1.46902 * 111.00243 * 3.84994 * 9 2 1 11 11 C 1.50707 * 109.46771 * 157.65892 * 10 9 2 12 12 O 1.21275 * 120.00222 * 351.28781 * 11 10 9 13 13 N 1.34776 * 119.99776 * 171.28951 * 11 10 9 14 14 C 1.46496 * 120.00212 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47182 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47393 * 60.00179 * 15 14 13 17 17 C 1.52997 * 109.47127 * 299.99974 * 15 14 13 18 18 C 1.50707 * 109.47112 * 179.97438 * 15 14 13 19 19 H 1.08001 * 119.99918 * 358.76777 * 18 15 14 20 20 C 1.37875 * 119.99933 * 178.76230 * 18 15 14 21 21 N 1.31519 * 120.00096 * 2.79282 * 20 18 15 22 22 Si 1.86796 * 120.00079 * 182.78575 * 20 18 15 23 23 H 1.48502 * 109.46896 * 84.99946 * 22 20 18 24 24 H 1.48506 * 109.47284 * 324.99982 * 22 20 18 25 25 H 1.48501 * 109.47471 * 205.00142 * 22 20 18 26 26 H 1.09000 * 109.47424 * 173.50421 * 1 2 3 27 27 H 1.09001 * 109.47503 * 293.50595 * 1 2 3 28 28 H 1.09003 * 109.47406 * 53.50824 * 1 2 3 29 29 H 1.09007 * 110.70433 * 23.30858 * 4 2 1 30 30 H 1.08994 * 110.70996 * 260.07327 * 4 2 1 31 31 H 1.08991 * 110.99328 * 206.25993 * 5 4 2 32 32 H 1.08997 * 110.98833 * 82.43461 * 5 4 2 33 33 H 1.09002 * 109.47019 * 311.95753 * 8 6 5 34 34 H 1.09000 * 109.47717 * 71.96077 * 8 6 5 35 35 H 1.09006 * 109.47026 * 191.95915 * 8 6 5 36 36 H 1.08994 * 109.47118 * 37.66164 * 10 9 2 37 37 H 1.09001 * 109.47197 * 277.65499 * 10 9 2 38 38 H 0.97007 * 119.99735 * 0.02562 * 13 11 10 39 39 H 1.09005 * 109.47192 * 60.00065 * 14 13 11 40 40 H 1.08994 * 109.46886 * 299.99711 * 14 13 11 41 41 H 1.09001 * 109.47302 * 180.02562 * 16 15 14 42 42 H 1.09009 * 109.46357 * 299.99834 * 16 15 14 43 43 H 1.08996 * 109.47035 * 59.99448 * 16 15 14 44 44 H 1.09004 * 109.47253 * 294.84643 * 17 15 14 45 45 H 1.08991 * 109.47492 * 54.85127 * 17 15 14 46 46 H 1.09010 * 109.47199 * 174.85486 * 17 15 14 47 47 H 0.97001 * 119.99834 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0550 -0.7499 1.2424 5 6 3.2892 -1.5134 0.6941 6 6 2.8189 -1.8833 -0.7348 7 1 2.1940 -2.7760 -0.7094 8 6 4.0236 -2.1010 -1.6524 9 7 2.0315 -0.7164 -1.1870 10 6 0.9239 -1.1340 -2.0570 11 6 1.4386 -1.3497 -3.4569 12 8 2.5710 -1.0237 -3.7436 13 7 0.6404 -1.9048 -4.3902 14 6 1.1408 -2.1150 -5.7509 15 6 0.0442 -2.7553 -6.6044 16 6 -1.1745 -1.8311 -6.6463 17 6 -0.3564 -4.1002 -5.9949 18 6 0.5588 -2.9710 -8.0043 19 1 1.5603 -2.6622 -8.2651 20 6 -0.2490 -3.5625 -8.9522 21 7 -1.4869 -3.8886 -8.6504 22 14 0.4146 -3.9008 -10.6652 23 1 1.1313 -5.2014 -10.6705 24 1 1.3522 -2.8173 -11.0558 25 1 -0.7120 -3.9524 -11.6314 26 1 -0.3634 -1.0210 -0.1163 27 1 -0.3634 0.4099 0.9424 28 1 -0.3634 0.6112 -0.8262 29 1 1.3055 -1.4472 1.6169 30 1 2.3514 -0.0465 2.0204 31 1 3.4881 -2.4084 1.2835 32 1 4.1657 -0.8664 0.6614 33 1 4.7234 -1.2734 -1.5357 34 1 4.5184 -3.0353 -1.3871 35 1 3.6874 -2.1492 -2.6882 36 1 0.1577 -0.3588 -2.0670 37 1 0.4961 -2.0630 -1.6800 38 1 -0.2656 -2.1651 -4.1610 39 1 2.0087 -2.7738 -5.7212 40 1 1.4265 -1.1569 -6.1850 41 1 -1.9559 -2.2875 -7.2540 42 1 -1.5468 -1.6748 -5.6338 43 1 -0.8891 -0.8730 -7.0805 44 1 0.4867 -4.7891 -6.0486 45 1 -0.6422 -3.9563 -4.9530 46 1 -1.1992 -4.5137 -6.5490 47 1 -2.0553 -4.3045 -9.3174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:55 Heat of formation + Delta-G solvation = -32.761371 kcal Electronic energy + Delta-G solvation = -23493.536962 eV Core-core repulsion = 20290.282207 eV Total energy + Delta-G solvation = -3203.254755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.17185 -38.52018 -36.23971 -33.31530 -32.92173 -32.04874 -30.79300 -28.20748 -27.00351 -25.71678 -25.40982 -24.44613 -23.78960 -21.01650 -20.41490 -19.14466 -18.68735 -17.19717 -16.09721 -15.83843 -15.48848 -15.40769 -14.76598 -14.49990 -14.25507 -13.57721 -13.48280 -13.02233 -12.94202 -12.77066 -12.64381 -12.38574 -12.19780 -11.94231 -11.72516 -11.42866 -11.38499 -11.24320 -11.17271 -10.88940 -10.84542 -10.76036 -10.68411 -10.44518 -10.26819 -10.18603 -9.60100 -9.40653 -9.12344 -8.76438 -8.41095 -8.26962 -8.19746 -6.01126 -4.10410 3.16968 3.29656 3.36008 3.39447 3.51977 4.12295 4.41377 4.46744 4.53628 4.69883 5.05744 5.10861 5.16549 5.23467 5.25957 5.30359 5.37579 5.39105 5.49745 5.60131 5.73419 5.75026 5.83395 5.94690 5.99278 6.14802 6.25978 6.28951 6.36969 6.53285 6.69234 6.83156 6.84136 6.92292 7.01306 7.03795 7.05405 7.16077 7.38773 7.57217 7.71079 8.01184 8.11485 8.22856 8.40514 8.85598 8.91933 9.55208 11.00641 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033752 B = 0.003536 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.387143 B = 7916.526893 C = 8322.225933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.069 3.931 3 H 0.087 0.913 4 C -0.138 4.138 5 C -0.126 4.126 6 C 0.073 3.927 7 H 0.049 0.951 8 C -0.147 4.147 9 N -0.501 5.501 10 C 0.022 3.978 11 C 0.500 3.500 12 O -0.525 6.525 13 N -0.722 5.722 14 C 0.135 3.865 15 C 0.055 3.945 16 C -0.130 4.130 17 C -0.128 4.128 18 C -0.506 4.506 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.274 1.274 25 H -0.288 1.288 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.395 0.605 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.005 0.995 43 H 0.026 0.974 44 H 0.028 0.972 45 H 0.006 0.994 46 H 0.081 0.919 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 4.146 18.620 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.039 4.039 3 H 0.105 0.895 4 C -0.177 4.177 5 C -0.164 4.164 6 C -0.035 4.035 7 H 0.067 0.933 8 C -0.205 4.205 9 N -0.225 5.225 10 C -0.109 4.109 11 C 0.285 3.715 12 O -0.402 6.402 13 N -0.374 5.374 14 C 0.012 3.988 15 C 0.055 3.945 16 C -0.187 4.187 17 C -0.185 4.185 18 C -0.545 4.545 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.199 1.199 25 H -0.213 1.213 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.078 0.922 38 H 0.230 0.770 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.024 0.976 43 H 0.045 0.955 44 H 0.047 0.953 45 H 0.025 0.975 46 H 0.100 0.900 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.985 4.630 18.002 18.826 hybrid contribution -0.743 -0.892 -0.377 1.220 sum 2.242 3.738 17.624 18.156 Atomic orbital electron populations 1.22440 0.95980 1.02245 1.02336 1.22461 0.93666 0.99018 0.88779 0.89527 1.22874 0.97816 0.99391 0.97602 1.22782 0.98066 1.00163 0.95369 1.22654 0.95640 0.91286 0.93904 0.93252 1.21988 0.96341 0.99815 1.02328 1.63276 1.20396 1.23460 1.15367 1.22415 0.94663 1.01358 0.92472 1.20478 0.86167 0.78176 0.86689 1.90577 1.18579 1.49903 1.81113 1.46323 1.16694 1.62293 1.12097 1.21638 0.98161 0.99708 0.79258 1.18354 0.90854 0.91800 0.93514 1.21832 1.01121 0.98487 0.97302 1.21798 1.01976 0.98931 0.95841 1.20987 0.99880 1.39531 0.94073 0.92472 1.24877 0.94755 0.95331 0.98519 1.69818 1.06257 1.42167 1.34251 0.86597 0.78488 0.78782 0.84061 1.20656 1.19948 1.21334 0.92206 0.92012 0.91588 0.91445 0.90875 0.91066 0.90539 0.92617 0.93781 0.89156 0.87424 0.92234 0.77047 0.92942 0.92869 0.89613 0.97584 0.95489 0.95312 0.97538 0.90037 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 7.71 37.16 0.29 -1.15 16 2 C 0.07 0.69 4.02 -66.73 -0.27 0.42 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.14 -1.18 6.47 -24.91 -0.16 -1.34 16 5 C -0.13 -1.22 6.50 -24.59 -0.16 -1.38 16 6 C 0.07 0.90 2.96 -66.18 -0.20 0.71 16 7 H 0.05 0.61 7.42 -51.93 -0.39 0.22 16 8 C -0.15 -2.08 9.20 37.16 0.34 -1.74 16 9 N -0.50 -6.51 4.37 -216.95 -0.95 -7.46 16 10 C 0.02 0.29 4.22 -4.97 -0.02 0.27 16 11 C 0.50 8.60 7.40 -10.98 -0.08 8.52 16 12 O -0.52 -10.81 13.26 5.56 0.07 -10.74 16 13 N -0.72 -12.73 4.91 -60.30 -0.30 -13.03 16 14 C 0.13 2.87 4.50 -4.04 -0.02 2.85 16 15 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 16 C -0.13 -2.92 8.09 37.16 0.30 -2.62 16 17 C -0.13 -2.87 8.06 37.16 0.30 -2.57 16 18 C -0.51 -13.31 8.01 -34.44 -0.28 -13.59 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.75 5.14 -17.82 -0.09 1.66 16 21 N -0.89 -23.64 9.42 55.43 0.52 -23.12 16 22 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H 0.06 0.50 6.88 -51.93 -0.36 0.14 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.56 6.70 -51.93 -0.35 0.22 16 29 H 0.07 0.53 7.85 -51.92 -0.41 0.13 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.76 7.94 -51.93 -0.41 0.35 16 33 H 0.05 0.79 7.98 -51.93 -0.41 0.38 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.58 4.76 -51.93 -0.25 1.34 16 36 H 0.11 1.23 5.41 -51.93 -0.28 0.95 16 37 H 0.06 0.69 7.03 -51.93 -0.36 0.32 16 38 H 0.39 6.27 6.16 -40.82 -0.25 6.02 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.09 2.14 6.06 -51.93 -0.31 1.82 16 42 H 0.01 0.10 6.86 -51.92 -0.36 -0.25 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.01 0.11 6.73 -51.93 -0.35 -0.24 16 46 H 0.08 2.01 6.24 -51.92 -0.32 1.69 16 47 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -28.38 348.96 -8.69 -37.07 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.16 Total: 4.96 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.12 Total: -8.74 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.72 Total: -43.60 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.38 -8.69 -37.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.312 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds