Wall clock time and date at job start Tue Mar 31 2020 06:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.59434 * 2 1 4 4 C 1.54929 * 110.66986 * 236.99153 * 2 1 3 5 5 C 1.54600 * 102.92259 * 203.98352 * 4 2 1 6 6 C 1.53989 * 105.13770 * 21.95784 * 5 4 2 7 7 H 1.08997 * 109.91953 * 241.67149 * 6 5 4 8 8 C 1.53000 * 109.91675 * 120.57879 * 6 5 4 9 9 N 1.47902 * 107.06143 * 1.22538 * 6 5 4 10 10 C 1.46895 * 111.00107 * 214.15935 * 9 6 5 11 11 C 1.50693 * 109.47632 * 63.16471 * 10 9 6 12 12 O 1.21288 * 120.00000 * 353.81423 * 11 10 9 13 13 N 1.34777 * 120.00374 * 173.81326 * 11 10 9 14 14 C 1.46503 * 120.00112 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47097 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.46902 * 299.99937 * 15 14 13 17 17 C 1.52994 * 109.47238 * 59.99716 * 15 14 13 18 18 C 1.50702 * 109.46972 * 179.97438 * 15 14 13 19 19 H 1.07992 * 119.99851 * 359.97438 * 18 15 14 20 20 C 1.37881 * 119.99524 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00214 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 119.99723 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47305 * 59.99364 * 22 20 18 24 24 H 1.48498 * 109.47372 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.47087 * 299.99910 * 22 20 18 26 26 H 1.08997 * 109.47086 * 183.00074 * 1 2 3 27 27 H 1.08998 * 109.47476 * 303.00242 * 1 2 3 28 28 H 1.09001 * 109.46932 * 63.00240 * 1 2 3 29 29 H 1.09000 * 110.72530 * 85.62614 * 4 2 1 30 30 H 1.08997 * 110.87658 * 322.41543 * 4 2 1 31 31 H 1.08999 * 110.30802 * 263.03961 * 5 4 2 32 32 H 1.09000 * 110.39064 * 140.91941 * 5 4 2 33 33 H 1.08995 * 109.47141 * 61.45343 * 8 6 5 34 34 H 1.08998 * 109.47180 * 301.45211 * 8 6 5 35 35 H 1.09000 * 109.47061 * 181.45286 * 8 6 5 36 36 H 1.09001 * 109.46924 * 183.16991 * 10 9 6 37 37 H 1.09007 * 109.47055 * 303.16429 * 10 9 6 38 38 H 0.96994 * 119.99721 * 359.97438 * 13 11 10 39 39 H 1.08999 * 109.46979 * 300.00035 * 14 13 11 40 40 H 1.08997 * 109.47335 * 59.99576 * 14 13 11 41 41 H 1.08997 * 109.47011 * 59.99857 * 16 15 14 42 42 H 1.09000 * 109.46961 * 180.02562 * 16 15 14 43 43 H 1.09003 * 109.47086 * 300.00033 * 16 15 14 44 44 H 1.08997 * 109.47438 * 60.00395 * 17 15 14 45 45 H 1.09006 * 109.47250 * 180.02562 * 17 15 14 46 46 H 1.09007 * 109.47296 * 299.99664 * 17 15 14 47 47 H 0.97002 * 120.00086 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9134 1.0204 0.0000 4 6 2.0769 -0.7897 -1.2156 5 6 3.4870 -1.2148 -0.7457 6 6 3.4317 -1.1607 0.7923 7 1 4.1492 -0.4293 1.1642 8 6 3.7455 -2.5406 1.3739 9 7 2.0577 -0.7582 1.1632 10 6 2.0613 0.0720 2.3750 11 6 2.8137 1.3497 2.1064 12 8 3.3942 1.5015 1.0523 13 7 2.8416 2.3239 3.0373 14 6 3.5726 3.5663 2.7759 15 6 3.4465 4.4962 3.9843 16 6 1.9705 4.8151 4.2306 17 6 4.0328 3.8096 5.2195 18 6 4.1991 5.7739 3.7156 19 1 4.7159 5.9090 2.7771 20 6 4.2276 6.7704 4.6682 21 7 3.5978 6.6060 5.8109 22 14 5.1598 8.3544 4.3349 23 1 4.5911 9.0205 3.1356 24 1 5.0375 9.2569 5.5078 25 1 6.5925 8.0449 4.0964 26 1 -0.3633 -1.0262 0.0538 27 1 -0.3634 0.5597 0.8618 28 1 -0.3633 0.4665 -0.9157 29 1 2.1403 -0.1488 -2.0950 30 1 1.4589 -1.6637 -1.4209 31 1 4.2369 -0.5190 -1.1220 32 1 3.7097 -2.2278 -1.0809 33 1 4.7529 -2.8373 1.0823 34 1 3.0281 -3.2673 0.9928 35 1 3.6791 -2.5002 2.4612 36 1 1.0351 0.3071 2.6574 37 1 2.5459 -0.4713 3.1862 38 1 2.3770 2.2027 3.8801 39 1 4.6242 3.3391 2.6009 40 1 3.1553 4.0551 1.8957 41 1 1.4266 3.8907 4.4250 42 1 1.8806 5.4779 5.0912 43 1 1.5527 5.3042 3.3505 44 1 5.0844 3.5824 5.0442 45 1 3.9426 4.4720 6.0806 46 1 3.4888 2.8853 5.4141 47 1 3.6176 7.3072 6.4808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:57 Heat of formation + Delta-G solvation = -41.754822 kcal Electronic energy + Delta-G solvation = -23686.507326 eV Core-core repulsion = 20482.862586 eV Total energy + Delta-G solvation = -3203.644740 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43377 -38.13919 -36.26147 -33.33724 -32.55436 -32.29777 -30.84245 -28.40419 -26.71823 -25.76172 -25.41384 -24.22929 -23.82474 -20.71893 -20.39797 -19.68737 -18.76339 -16.85071 -16.27681 -15.77542 -15.22344 -15.17851 -14.79898 -14.68190 -14.22174 -13.62103 -13.39493 -13.10874 -12.91068 -12.80885 -12.60447 -12.24061 -12.10569 -11.95024 -11.77145 -11.43244 -11.28219 -11.21252 -10.94507 -10.88549 -10.75336 -10.67121 -10.57173 -10.45689 -10.26579 -10.19664 -10.01122 -9.65643 -9.37955 -8.84041 -8.47241 -8.33533 -8.08894 -6.04579 -4.14929 2.94403 3.28003 3.32514 3.35776 3.75566 3.94832 4.38084 4.66694 4.78039 5.04027 5.22059 5.22677 5.24911 5.30975 5.49898 5.51299 5.52202 5.64553 5.67028 5.75608 5.80281 5.96121 5.98481 6.09844 6.15139 6.19412 6.20416 6.28404 6.39939 6.41376 6.47098 6.73793 6.78818 6.89222 6.97528 6.98199 7.00497 7.06628 7.31789 7.52286 7.66388 7.97687 8.00429 8.11687 8.35411 8.63076 8.85414 9.50988 10.96717 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029196 B = 0.003672 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.801748 B = 7622.576103 C = 7631.134733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.040 3.960 3 H 0.092 0.908 4 C -0.113 4.113 5 C -0.118 4.118 6 C 0.057 3.943 7 H 0.072 0.928 8 C -0.135 4.135 9 N -0.488 5.488 10 C 0.022 3.978 11 C 0.472 3.528 12 O -0.548 6.548 13 N -0.714 5.714 14 C 0.132 3.868 15 C 0.056 3.944 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.507 4.507 19 H 0.056 0.944 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.398 0.602 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.006 0.994 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.006 0.994 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.557 -14.985 -6.735 17.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.067 4.067 3 H 0.109 0.891 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.051 4.051 7 H 0.090 0.910 8 C -0.193 4.193 9 N -0.211 5.211 10 C -0.110 4.110 11 C 0.257 3.743 12 O -0.428 6.428 13 N -0.364 5.364 14 C 0.009 3.991 15 C 0.055 3.945 16 C -0.188 4.188 17 C -0.188 4.188 18 C -0.546 4.546 19 H 0.074 0.926 20 C -0.134 4.134 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.233 0.767 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.025 0.975 42 H 0.104 0.896 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.104 0.896 46 H 0.025 0.975 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.497 -15.220 -7.179 17.419 hybrid contribution 0.802 1.645 0.239 1.845 sum -3.695 -13.576 -6.940 15.688 Atomic orbital electron populations 1.21696 0.94620 1.01826 1.01214 1.23168 0.94890 0.99120 0.89566 0.89055 1.22405 0.96034 0.99459 0.97172 1.22320 0.97524 1.01025 0.94764 1.22419 0.90497 0.96882 0.95277 0.90979 1.21790 1.00512 0.96385 1.00597 1.65017 1.18887 1.34616 1.02545 1.22408 1.01568 0.91141 0.95927 1.21797 0.81722 0.86261 0.84526 1.90610 1.45923 1.81033 1.25261 1.46488 1.53040 1.17806 1.19079 1.21692 0.94652 0.82710 1.00051 1.18352 0.93775 0.92667 0.89696 1.21823 0.96200 0.98433 1.02309 1.21823 0.97558 0.97154 1.02228 1.20938 1.32001 0.99630 1.02009 0.92586 1.24873 0.95284 0.98304 0.94984 1.69788 1.42577 1.33585 1.06472 0.86636 0.80437 0.83141 0.77665 1.20279 1.21285 1.20289 0.92274 0.93070 0.92517 0.91607 0.91504 0.91537 0.91718 0.92762 0.92375 0.93036 0.88105 0.88091 0.76702 0.92892 0.92889 0.97510 0.89588 0.95523 0.95518 0.89603 0.97515 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.47 37.16 0.35 -1.17 16 2 C 0.04 0.53 2.50 -65.79 -0.16 0.36 16 3 H 0.09 1.49 5.06 -51.93 -0.26 1.23 16 4 C -0.11 -1.33 6.50 -24.87 -0.16 -1.49 16 5 C -0.12 -1.43 6.57 -25.37 -0.17 -1.60 16 6 C 0.06 0.75 2.38 -66.65 -0.16 0.59 16 7 H 0.07 1.13 5.79 -51.93 -0.30 0.83 16 8 C -0.13 -1.45 9.32 37.16 0.35 -1.11 16 9 N -0.49 -6.28 4.87 -216.23 -1.05 -7.33 16 10 C 0.02 0.28 5.84 -4.98 -0.03 0.25 16 11 C 0.47 7.68 6.73 -10.99 -0.07 7.61 16 12 O -0.55 -10.48 11.79 5.55 0.07 -10.41 16 13 N -0.71 -12.20 4.96 -60.30 -0.30 -12.50 16 14 C 0.13 2.75 4.50 -4.04 -0.02 2.73 16 15 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 16 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 17 C -0.13 -2.89 8.08 37.15 0.30 -2.59 16 18 C -0.51 -13.21 8.01 -34.44 -0.28 -13.49 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 21 N -0.89 -23.44 9.35 55.43 0.52 -22.92 16 22 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.58 7.74 -51.93 -0.40 0.17 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.71 8.06 -51.93 -0.42 0.30 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.67 7.69 -51.93 -0.40 0.27 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 1.13 7.70 -51.93 -0.40 0.73 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.40 6.16 6.16 -40.82 -0.25 5.91 16 39 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 42 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 46 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 47 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -27.24 353.26 -8.78 -36.02 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -8.39 Total: 5.84 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 0.08 Total: -9.64 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.83 Total: -42.75 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.24 -8.78 -36.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.739 kcal (2) G-P(sol) polarization free energy of solvation -27.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds