Wall clock time and date at job start Tue Mar 31 2020 06:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.59434 * 2 1 4 4 C 1.54929 * 110.66986 * 236.99153 * 2 1 3 5 5 C 1.54600 * 102.92259 * 203.98352 * 4 2 1 6 6 C 1.53989 * 105.13770 * 21.95784 * 5 4 2 7 7 H 1.08997 * 109.91953 * 241.67149 * 6 5 4 8 8 C 1.53000 * 109.91675 * 120.57879 * 6 5 4 9 9 N 1.47902 * 107.06143 * 1.22538 * 6 5 4 10 10 C 1.46895 * 111.00107 * 214.15935 * 9 6 5 11 11 C 1.50693 * 109.47632 * 63.16471 * 10 9 6 12 12 O 1.21288 * 120.00000 * 353.81423 * 11 10 9 13 13 N 1.34777 * 120.00374 * 173.81326 * 11 10 9 14 14 C 1.46503 * 120.00112 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47097 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.46902 * 299.99937 * 15 14 13 17 17 C 1.52994 * 109.47238 * 59.99716 * 15 14 13 18 18 C 1.50702 * 109.46972 * 179.97438 * 15 14 13 19 19 H 1.07992 * 119.99851 * 359.97438 * 18 15 14 20 20 C 1.37881 * 119.99524 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00214 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 119.99723 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47305 * 59.99364 * 22 20 18 24 24 H 1.48498 * 109.47372 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.47087 * 299.99910 * 22 20 18 26 26 H 1.08997 * 109.47086 * 183.00074 * 1 2 3 27 27 H 1.08998 * 109.47476 * 303.00242 * 1 2 3 28 28 H 1.09001 * 109.46932 * 63.00240 * 1 2 3 29 29 H 1.09000 * 110.72530 * 85.62614 * 4 2 1 30 30 H 1.08997 * 110.87658 * 322.41543 * 4 2 1 31 31 H 1.08999 * 110.30802 * 263.03961 * 5 4 2 32 32 H 1.09000 * 110.39064 * 140.91941 * 5 4 2 33 33 H 1.08995 * 109.47141 * 61.45343 * 8 6 5 34 34 H 1.08998 * 109.47180 * 301.45211 * 8 6 5 35 35 H 1.09000 * 109.47061 * 181.45286 * 8 6 5 36 36 H 1.09001 * 109.46924 * 183.16991 * 10 9 6 37 37 H 1.09007 * 109.47055 * 303.16429 * 10 9 6 38 38 H 0.96994 * 119.99721 * 359.97438 * 13 11 10 39 39 H 1.08999 * 109.46979 * 300.00035 * 14 13 11 40 40 H 1.08997 * 109.47335 * 59.99576 * 14 13 11 41 41 H 1.08997 * 109.47011 * 59.99857 * 16 15 14 42 42 H 1.09000 * 109.46961 * 180.02562 * 16 15 14 43 43 H 1.09003 * 109.47086 * 300.00033 * 16 15 14 44 44 H 1.08997 * 109.47438 * 60.00395 * 17 15 14 45 45 H 1.09006 * 109.47250 * 180.02562 * 17 15 14 46 46 H 1.09007 * 109.47296 * 299.99664 * 17 15 14 47 47 H 0.97002 * 120.00086 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9134 1.0204 0.0000 4 6 2.0769 -0.7897 -1.2156 5 6 3.4870 -1.2148 -0.7457 6 6 3.4317 -1.1607 0.7923 7 1 4.1492 -0.4293 1.1642 8 6 3.7455 -2.5406 1.3739 9 7 2.0577 -0.7582 1.1632 10 6 2.0613 0.0720 2.3750 11 6 2.8137 1.3497 2.1064 12 8 3.3942 1.5015 1.0523 13 7 2.8416 2.3239 3.0373 14 6 3.5726 3.5663 2.7759 15 6 3.4465 4.4962 3.9843 16 6 1.9705 4.8151 4.2306 17 6 4.0328 3.8096 5.2195 18 6 4.1991 5.7739 3.7156 19 1 4.7159 5.9090 2.7771 20 6 4.2276 6.7704 4.6682 21 7 3.5978 6.6060 5.8109 22 14 5.1598 8.3544 4.3349 23 1 4.5911 9.0205 3.1356 24 1 5.0375 9.2569 5.5078 25 1 6.5925 8.0449 4.0964 26 1 -0.3633 -1.0262 0.0538 27 1 -0.3634 0.5597 0.8618 28 1 -0.3633 0.4665 -0.9157 29 1 2.1403 -0.1488 -2.0950 30 1 1.4589 -1.6637 -1.4209 31 1 4.2369 -0.5190 -1.1220 32 1 3.7097 -2.2278 -1.0809 33 1 4.7529 -2.8373 1.0823 34 1 3.0281 -3.2673 0.9928 35 1 3.6791 -2.5002 2.4612 36 1 1.0351 0.3071 2.6574 37 1 2.5459 -0.4713 3.1862 38 1 2.3770 2.2027 3.8801 39 1 4.6242 3.3391 2.6009 40 1 3.1553 4.0551 1.8957 41 1 1.4266 3.8907 4.4250 42 1 1.8806 5.4779 5.0912 43 1 1.5527 5.3042 3.3505 44 1 5.0844 3.5824 5.0442 45 1 3.9426 4.4720 6.0806 46 1 3.4888 2.8853 5.4141 47 1 3.6176 7.3072 6.4808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457989885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:56 Heat of formation + Delta-G solvation = -58.088756 kcal Electronic energy + Delta-G solvation = -23687.215619 eV Core-core repulsion = 20482.862586 eV Total energy + Delta-G solvation = -3204.353033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63117 -39.43640 -37.90676 -34.99951 -33.51516 -33.41851 -32.57985 -29.31913 -28.05266 -27.58214 -27.30196 -25.72926 -24.73678 -21.98359 -21.40062 -20.90547 -20.52502 -18.28182 -17.61680 -17.40380 -16.54055 -16.51923 -16.37211 -15.92778 -15.35531 -15.01241 -14.87785 -14.61586 -14.11057 -14.02677 -13.94460 -13.56700 -13.24103 -13.10697 -13.02018 -12.87866 -12.76570 -12.63715 -12.62252 -12.29837 -12.22726 -12.15529 -11.87793 -11.61506 -11.53591 -11.52243 -11.40905 -11.21485 -11.15687 -10.73552 -10.41047 -9.88382 -9.24929 -8.03995 -6.20022 1.42006 1.43415 1.49876 1.65290 2.33948 2.50318 2.94880 3.19374 3.69760 3.82345 3.90377 4.18659 4.30232 4.34626 4.43141 4.49292 4.52529 4.56318 4.58414 4.69702 4.72866 4.80229 4.88830 4.90671 4.96883 5.01138 5.03924 5.05883 5.09698 5.17289 5.20357 5.23911 5.30836 5.35710 5.43479 5.49375 5.60184 5.64874 5.65408 5.97738 6.02190 6.13458 6.19966 6.41651 6.67711 6.83853 7.31622 7.47710 8.94478 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029196 B = 0.003672 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.801748 B = 7622.576103 C = 7631.134733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.035 3.965 3 H 0.056 0.944 4 C -0.110 4.110 5 C -0.119 4.119 6 C 0.054 3.946 7 H 0.040 0.960 8 C -0.128 4.128 9 N -0.479 5.479 10 C 0.028 3.972 11 C 0.471 3.529 12 O -0.578 6.578 13 N -0.710 5.710 14 C 0.152 3.848 15 C 0.051 3.949 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.531 4.531 19 H 0.041 0.959 20 C 0.030 3.970 21 N -0.898 5.898 22 Si 0.943 3.057 23 H -0.278 1.278 24 H -0.281 1.281 25 H -0.278 1.278 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.408 0.592 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.015 0.985 44 H 0.015 0.985 45 H 0.062 0.938 46 H 0.038 0.962 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.648 -16.885 -6.590 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.072 4.072 3 H 0.074 0.926 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.055 4.055 7 H 0.059 0.941 8 C -0.186 4.186 9 N -0.202 5.202 10 C -0.104 4.104 11 C 0.258 3.742 12 O -0.459 6.459 13 N -0.362 5.362 14 C 0.027 3.973 15 C 0.050 3.950 16 C -0.177 4.177 17 C -0.177 4.177 18 C -0.570 4.570 19 H 0.060 0.940 20 C -0.170 4.170 21 N -0.536 5.536 22 Si 0.770 3.230 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.203 1.203 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.246 0.754 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.081 0.919 46 H 0.057 0.943 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.601 -17.139 -7.026 19.352 hybrid contribution 1.159 2.221 0.145 2.510 sum -4.442 -14.918 -6.881 17.019 Atomic orbital electron populations 1.21650 0.92889 1.02607 1.01575 1.23145 0.96232 0.97427 0.90443 0.92579 1.22423 0.95898 0.99895 0.96591 1.22335 0.97343 1.01696 0.94361 1.22447 0.89812 0.97371 0.95843 0.94149 1.21731 1.01248 0.94888 1.00683 1.65116 1.18571 1.33982 1.02513 1.22559 1.02310 0.88991 0.96520 1.22557 0.81142 0.86927 0.83574 1.90618 1.47069 1.81652 1.26567 1.46317 1.53085 1.16795 1.19958 1.21168 0.93832 0.83913 0.98369 1.18357 0.93914 0.92066 0.90668 1.21652 0.95983 0.99347 1.00677 1.21653 0.97372 0.97943 1.00705 1.21236 1.32636 1.01478 1.01615 0.94039 1.25431 0.96038 1.00580 0.94971 1.69891 1.42948 1.34078 1.06710 0.85848 0.79263 0.80360 0.77523 1.20315 1.20667 1.20338 0.91093 0.93182 0.91862 0.91697 0.89714 0.93483 0.89671 0.91971 0.91444 0.92693 0.85861 0.85966 0.75448 0.94894 0.94860 0.94278 0.91932 0.96539 0.96544 0.91941 0.94279 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.47 71.98 0.68 -1.93 16 2 C 0.04 0.89 2.50 45.26 0.11 1.00 16 3 H 0.06 1.84 5.06 -2.39 -0.01 1.83 16 4 C -0.11 -2.43 6.50 31.80 0.21 -2.22 16 5 C -0.12 -2.77 6.57 31.47 0.21 -2.56 16 6 C 0.05 1.32 2.38 45.06 0.11 1.43 16 7 H 0.04 1.26 5.79 -2.39 -0.01 1.25 16 8 C -0.13 -2.43 9.32 71.98 0.67 -1.76 16 9 N -0.48 -11.35 4.87 -838.02 -4.08 -15.43 16 10 C 0.03 0.65 5.84 85.56 0.50 1.15 16 11 C 0.47 14.99 6.73 87.65 0.59 15.58 16 12 O -0.58 -22.48 11.79 -3.05 -0.04 -22.51 16 13 N -0.71 -23.57 4.96 -463.06 -2.30 -25.87 16 14 C 0.15 6.41 4.50 86.38 0.39 6.80 16 15 C 0.05 2.33 0.50 -52.93 -0.03 2.30 16 16 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 17 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 18 C -0.53 -28.19 8.01 25.60 0.21 -27.98 16 19 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 20 C 0.03 1.57 5.15 84.66 0.44 2.01 16 21 N -0.90 -47.71 9.35 21.45 0.20 -47.51 16 22 Si 0.94 42.63 29.54 68.60 2.03 44.66 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.01 7.74 -2.39 -0.02 0.99 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.57 8.06 -2.39 -0.02 1.55 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.60 7.69 -2.39 -0.02 1.58 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 2.33 7.70 -2.39 -0.02 2.31 16 37 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 38 H 0.41 11.69 6.16 -92.71 -0.57 11.12 16 39 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 42 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 43 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.06 3.07 6.07 -2.38 -0.01 3.05 16 46 H 0.04 1.42 6.86 -2.38 -0.02 1.40 16 47 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 Total: -1.00 -59.50 353.26 1.42 -58.08 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.36 Total: 24.08 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 5.24 Total: -15.50 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -6.17 Total: -88.81 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.04 Total: -22.51 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -59.50 1.42 -58.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.005 kcal (2) G-P(sol) polarization free energy of solvation -59.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds