Wall clock time and date at job start Tue Mar 31 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46940 * 2 1 4 4 C 1.52995 * 109.47041 * 120.00225 * 2 1 3 5 5 C 1.53002 * 109.46764 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46984 * 299.99298 * 5 4 2 7 7 C 1.53004 * 109.46661 * 60.00644 * 6 5 4 8 8 C 1.53000 * 109.46669 * 239.99950 * 2 1 3 9 9 C 1.52995 * 109.47164 * 60.00351 * 8 2 1 10 10 N 1.46492 * 109.47454 * 299.99599 * 8 2 1 11 11 C 1.34781 * 120.00297 * 180.02562 * 10 8 2 12 12 O 1.21583 * 119.99716 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00055 * 180.02562 * 11 10 8 14 14 C 1.46504 * 119.99669 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46858 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.46867 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47038 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00159 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 H 1.08996 * 109.46940 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46869 * 299.99785 * 1 2 3 27 27 H 1.08994 * 109.47284 * 60.00200 * 1 2 3 28 28 H 1.08996 * 109.47438 * 60.00079 * 4 2 1 29 29 H 1.08998 * 109.47281 * 299.99738 * 4 2 1 30 30 H 1.09006 * 109.46706 * 179.97438 * 5 4 2 31 31 H 1.08993 * 109.47562 * 60.00113 * 5 4 2 32 32 H 1.08996 * 109.47600 * 300.00242 * 6 5 4 33 33 H 1.09005 * 109.46984 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.46629 * 179.97438 * 7 6 5 35 35 H 1.08996 * 109.47442 * 59.99501 * 7 6 5 36 36 H 1.09004 * 109.47336 * 299.99501 * 9 8 2 37 37 H 1.08996 * 109.47438 * 59.99342 * 9 8 2 38 38 H 1.08998 * 109.47281 * 179.97438 * 9 8 2 39 39 H 0.97003 * 119.99978 * 0.02562 * 10 8 2 40 40 H 0.96994 * 120.00039 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.46998 * 59.99975 * 14 13 11 42 42 H 1.09004 * 109.47081 * 299.99839 * 14 13 11 43 43 H 1.08996 * 109.47435 * 60.00122 * 15 14 13 44 44 H 1.08996 * 109.47029 * 300.00000 * 15 14 13 45 45 H 1.09003 * 109.46825 * 60.00325 * 16 15 14 46 46 H 1.08996 * 109.47396 * 299.99898 * 16 15 14 47 47 H 0.96998 * 119.99255 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5701 -0.7207 1.2494 6 6 4.0805 -1.4417 0.0002 7 6 3.5705 -0.7203 -1.2490 8 6 2.0400 -0.7213 -1.2493 9 6 1.5300 0.0000 -2.4984 10 7 1.5517 -2.1024 -1.2492 11 6 1.8777 -2.9325 -2.2599 12 8 2.5773 -2.5351 -3.1713 13 7 1.4280 -4.2030 -2.2600 14 6 1.7828 -5.1054 -3.3583 15 6 1.1485 -6.4766 -3.1169 16 6 1.5185 -7.4188 -4.2642 17 6 0.8931 -8.7692 -4.0268 18 1 0.2922 -8.9387 -3.1454 19 6 1.0889 -9.7888 -4.9340 20 7 1.8210 -9.5827 -6.0070 21 14 0.3131 -11.4624 -4.6401 22 1 1.2489 -12.3117 -3.8600 23 1 0.0264 -12.1112 -5.9447 24 1 -0.9526 -11.2951 -3.8817 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6768 -1.7489 1.2492 29 1 1.6768 -0.2075 2.1392 30 1 3.9334 -1.2342 2.1397 31 1 3.9331 0.3070 1.2497 32 1 3.7176 -2.4694 0.0000 33 1 5.1706 -1.4408 0.0002 34 1 3.9345 -1.2337 -2.1390 35 1 3.9334 0.3074 -1.2488 36 1 0.4400 0.0000 -2.4985 37 1 1.8933 1.0276 -2.4984 38 1 1.8936 -0.5136 -3.3884 39 1 0.9938 -2.4196 -0.5219 40 1 0.8696 -4.5200 -1.5331 41 1 2.8667 -5.2096 -3.4072 42 1 1.4144 -4.6955 -4.2988 43 1 0.0646 -6.3720 -3.0683 44 1 1.5164 -6.8866 -2.1764 45 1 2.6024 -7.5234 -4.3132 46 1 1.1502 -7.0086 -5.2045 47 1 2.2235 -8.7135 -6.1597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458298943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:31 Heat of formation + Delta-G solvation = -73.342809 kcal Electronic energy + Delta-G solvation = -23059.642473 eV Core-core repulsion = 19854.627975 eV Total energy + Delta-G solvation = -3205.014498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88314 -38.57790 -35.49355 -34.03665 -33.57376 -32.76479 -31.67377 -30.33121 -27.51293 -26.27770 -25.71345 -23.14921 -22.25638 -21.13576 -20.98121 -20.77711 -19.10264 -18.23648 -16.78230 -15.94379 -15.50775 -15.24219 -14.89059 -14.65722 -14.36190 -14.21416 -13.92326 -13.73091 -13.68445 -13.10157 -12.89040 -12.57304 -12.19861 -12.13606 -11.98489 -11.91796 -11.78247 -11.59127 -11.49496 -11.14981 -10.84147 -10.78506 -10.77462 -10.42226 -10.31363 -10.14367 -9.97759 -9.93771 -9.54038 -9.05175 -8.58644 -8.56125 -8.32224 -6.35821 -4.05412 2.86105 3.41668 3.43458 3.47194 3.62897 4.27201 4.38582 4.46711 4.47580 4.55377 4.84420 4.86843 5.10294 5.13185 5.22370 5.29231 5.32451 5.41452 5.49836 5.52642 5.57281 5.63705 5.67928 5.74034 5.75673 5.79310 5.84670 5.93552 5.95606 6.06887 6.10070 6.18858 6.28137 6.34556 6.47697 6.52692 6.68427 6.78202 6.92445 7.10815 7.38211 7.50776 8.19212 8.21443 8.46348 8.81965 8.88691 9.67215 11.05072 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030928 B = 0.002852 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.116843 B = 9816.566949 C = 9877.693287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 H 0.083 0.917 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.132 4.132 8 C 0.204 3.796 9 C -0.167 4.167 10 N -0.739 5.739 11 C 0.703 3.297 12 O -0.589 6.589 13 N -0.745 5.745 14 C 0.136 3.864 15 C -0.113 4.113 16 C 0.011 3.989 17 C -0.603 4.603 18 H 0.049 0.951 19 C 0.014 3.986 20 N -0.913 5.913 21 Si 1.072 2.928 22 H -0.288 1.288 23 H -0.284 1.284 24 H -0.289 1.289 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.391 0.609 40 H 0.392 0.608 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 21.668 16.030 26.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 H 0.102 0.898 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.170 4.170 8 C 0.117 3.883 9 C -0.225 4.225 10 N -0.396 5.396 11 C 0.403 3.597 12 O -0.468 6.468 13 N -0.399 5.399 14 C 0.013 3.987 15 C -0.151 4.151 16 C -0.027 4.027 17 C -0.642 4.642 18 H 0.067 0.933 19 C -0.190 4.190 20 N -0.549 5.549 21 Si 0.900 3.100 22 H -0.215 1.215 23 H -0.210 1.210 24 H -0.215 1.215 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.226 0.774 40 H 0.225 0.775 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.325 20.506 14.523 25.130 hybrid contribution -0.397 1.223 1.407 1.906 sum -0.722 21.728 15.931 26.952 Atomic orbital electron populations 1.21906 0.94855 1.02008 1.02022 1.21405 0.95917 0.99888 0.93931 0.89849 1.21597 0.95904 1.00588 0.97102 1.21545 0.95359 1.00666 0.98077 1.21466 0.99946 0.99779 0.94160 1.22005 0.94432 1.00910 0.99681 1.20041 0.93529 0.80080 0.94618 1.22304 1.01014 0.99940 0.99233 1.45301 1.56954 1.11889 1.25439 1.15999 0.80391 0.80798 0.82543 1.90840 1.42620 1.75929 1.37362 1.45388 1.56083 1.10649 1.27762 1.21453 0.99925 0.89138 0.88183 1.21743 0.99589 0.92525 1.01267 1.19153 0.96434 0.94281 0.92801 1.22049 1.34980 0.96960 1.10169 0.93292 1.25865 0.96082 1.03868 0.93194 1.70745 1.30913 1.26498 1.26747 0.83502 0.75739 0.74836 0.75878 1.21465 1.20974 1.21517 0.92685 0.92552 0.91979 0.92008 0.91860 0.92199 0.92122 0.91986 0.92306 0.89244 0.91778 0.92561 0.92361 0.89966 0.77448 0.77511 0.92145 0.92148 0.92669 0.92674 0.97190 0.97177 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.67 37.16 0.32 -0.68 16 2 C -0.09 -0.68 2.00 -90.62 -0.18 -0.86 16 3 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.79 5.03 -26.73 -0.13 -0.93 16 5 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 6 C -0.12 -1.14 5.77 -26.73 -0.15 -1.29 16 7 C -0.13 -1.43 4.52 -26.70 -0.12 -1.55 16 8 C 0.20 2.02 0.35 -131.80 -0.05 1.97 16 9 C -0.17 -1.80 8.05 37.16 0.30 -1.50 16 10 N -0.74 -7.96 3.75 -52.40 -0.20 -8.16 16 11 C 0.70 10.42 7.99 -86.92 -0.69 9.73 16 12 O -0.59 -10.86 12.55 5.29 0.07 -10.79 16 13 N -0.74 -10.83 5.56 -65.22 -0.36 -11.20 16 14 C 0.14 2.45 5.67 -4.04 -0.02 2.43 16 15 C -0.11 -2.26 5.27 -26.73 -0.14 -2.40 16 16 C 0.01 0.28 4.28 -27.88 -0.12 0.16 16 17 C -0.60 -17.22 9.11 -34.44 -0.31 -17.54 16 18 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 19 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 20 N -0.91 -28.32 13.65 55.43 0.76 -27.56 16 21 Si 1.07 25.41 29.90 -169.99 -5.08 20.33 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 25 H 0.05 0.37 6.86 -51.93 -0.36 0.01 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 28 H 0.06 0.44 6.86 -51.93 -0.36 0.08 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.70 7.61 -51.93 -0.39 0.31 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.27 6.17 -51.93 -0.32 0.95 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.16 6.17 -51.93 -0.32 0.84 16 39 H 0.39 3.38 6.18 -40.82 -0.25 3.13 16 40 H 0.39 4.65 8.49 -40.82 -0.35 4.30 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.01 0.26 8.01 -51.93 -0.42 -0.15 16 46 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 47 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -32.44 354.69 -9.45 -41.89 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.42 Total: 3.37 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -1.56 Total: -13.23 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.20 Total: -46.92 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.44 -9.45 -41.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458298943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.448 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds