Wall clock time and date at job start Tue Mar 31 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46940 * 2 1 4 4 C 1.52995 * 109.47041 * 120.00225 * 2 1 3 5 5 C 1.53002 * 109.46764 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46984 * 299.99298 * 5 4 2 7 7 C 1.53004 * 109.46661 * 60.00644 * 6 5 4 8 8 C 1.53000 * 109.46669 * 239.99950 * 2 1 3 9 9 C 1.52995 * 109.47164 * 60.00351 * 8 2 1 10 10 N 1.46492 * 109.47454 * 299.99599 * 8 2 1 11 11 C 1.34781 * 120.00297 * 180.02562 * 10 8 2 12 12 O 1.21583 * 119.99716 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00055 * 180.02562 * 11 10 8 14 14 C 1.46504 * 119.99669 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46858 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.46867 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47038 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00159 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 H 1.08996 * 109.46940 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46869 * 299.99785 * 1 2 3 27 27 H 1.08994 * 109.47284 * 60.00200 * 1 2 3 28 28 H 1.08996 * 109.47438 * 60.00079 * 4 2 1 29 29 H 1.08998 * 109.47281 * 299.99738 * 4 2 1 30 30 H 1.09006 * 109.46706 * 179.97438 * 5 4 2 31 31 H 1.08993 * 109.47562 * 60.00113 * 5 4 2 32 32 H 1.08996 * 109.47600 * 300.00242 * 6 5 4 33 33 H 1.09005 * 109.46984 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.46629 * 179.97438 * 7 6 5 35 35 H 1.08996 * 109.47442 * 59.99501 * 7 6 5 36 36 H 1.09004 * 109.47336 * 299.99501 * 9 8 2 37 37 H 1.08996 * 109.47438 * 59.99342 * 9 8 2 38 38 H 1.08998 * 109.47281 * 179.97438 * 9 8 2 39 39 H 0.97003 * 119.99978 * 0.02562 * 10 8 2 40 40 H 0.96994 * 120.00039 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.46998 * 59.99975 * 14 13 11 42 42 H 1.09004 * 109.47081 * 299.99839 * 14 13 11 43 43 H 1.08996 * 109.47435 * 60.00122 * 15 14 13 44 44 H 1.08996 * 109.47029 * 300.00000 * 15 14 13 45 45 H 1.09003 * 109.46825 * 60.00325 * 16 15 14 46 46 H 1.08996 * 109.47396 * 299.99898 * 16 15 14 47 47 H 0.96998 * 119.99255 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5701 -0.7207 1.2494 6 6 4.0805 -1.4417 0.0002 7 6 3.5705 -0.7203 -1.2490 8 6 2.0400 -0.7213 -1.2493 9 6 1.5300 0.0000 -2.4984 10 7 1.5517 -2.1024 -1.2492 11 6 1.8777 -2.9325 -2.2599 12 8 2.5773 -2.5351 -3.1713 13 7 1.4280 -4.2030 -2.2600 14 6 1.7828 -5.1054 -3.3583 15 6 1.1485 -6.4766 -3.1169 16 6 1.5185 -7.4188 -4.2642 17 6 0.8931 -8.7692 -4.0268 18 1 0.2922 -8.9387 -3.1454 19 6 1.0889 -9.7888 -4.9340 20 7 1.8210 -9.5827 -6.0070 21 14 0.3131 -11.4624 -4.6401 22 1 1.2489 -12.3117 -3.8600 23 1 0.0264 -12.1112 -5.9447 24 1 -0.9526 -11.2951 -3.8817 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6768 -1.7489 1.2492 29 1 1.6768 -0.2075 2.1392 30 1 3.9334 -1.2342 2.1397 31 1 3.9331 0.3070 1.2497 32 1 3.7176 -2.4694 0.0000 33 1 5.1706 -1.4408 0.0002 34 1 3.9345 -1.2337 -2.1390 35 1 3.9334 0.3074 -1.2488 36 1 0.4400 0.0000 -2.4985 37 1 1.8933 1.0276 -2.4984 38 1 1.8936 -0.5136 -3.3884 39 1 0.9938 -2.4196 -0.5219 40 1 0.8696 -4.5200 -1.5331 41 1 2.8667 -5.2096 -3.4072 42 1 1.4144 -4.6955 -4.2988 43 1 0.0646 -6.3720 -3.0683 44 1 1.5164 -6.8866 -2.1764 45 1 2.6024 -7.5234 -4.3132 46 1 1.1502 -7.0086 -5.2045 47 1 2.2235 -8.7135 -6.1597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458298943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:30 Heat of formation + Delta-G solvation = -93.417290 kcal Electronic energy + Delta-G solvation = -23060.512968 eV Core-core repulsion = 19854.627975 eV Total energy + Delta-G solvation = -3205.884993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84697 -39.62347 -37.09739 -35.43110 -34.94153 -33.56049 -33.06935 -31.63544 -28.23676 -28.04379 -26.49157 -25.02270 -23.19470 -22.51931 -22.04994 -21.79613 -20.02354 -19.39200 -18.90794 -17.01820 -16.81699 -16.14119 -15.92444 -15.74032 -15.62290 -15.47747 -15.07740 -15.00671 -14.79824 -14.71283 -13.82372 -13.72739 -13.59024 -13.27420 -12.93259 -12.88613 -12.68834 -12.61851 -12.56026 -12.48246 -12.27587 -12.02634 -11.86349 -11.81050 -11.78080 -11.46966 -11.31547 -11.03322 -10.73369 -10.60277 -10.54950 -10.24938 -9.72656 -8.69264 -6.40288 1.53443 1.63131 1.73738 1.80501 2.20842 2.57890 3.16225 3.29139 3.65054 3.78386 3.79986 4.05737 4.11421 4.13772 4.16537 4.41962 4.43165 4.46153 4.54053 4.62486 4.68614 4.74364 4.79880 4.85574 4.86654 4.90943 4.95625 4.99082 5.08854 5.16339 5.18732 5.21519 5.28971 5.34339 5.35997 5.41006 5.47269 5.48940 5.54170 5.56313 5.76014 5.97165 6.06016 6.18637 6.56084 7.15355 7.42931 7.65713 8.71692 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030928 B = 0.002852 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.116843 B = 9816.566949 C = 9877.693287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 H 0.096 0.904 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.114 4.114 7 C -0.131 4.131 8 C 0.200 3.800 9 C -0.164 4.164 10 N -0.719 5.719 11 C 0.699 3.301 12 O -0.627 6.627 13 N -0.736 5.736 14 C 0.154 3.846 15 C -0.094 4.094 16 C 0.008 3.992 17 C -0.617 4.617 18 H 0.057 0.943 19 C -0.043 4.043 20 N -0.941 5.941 21 Si 1.123 2.877 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.265 1.265 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.043 0.957 39 H 0.405 0.595 40 H 0.408 0.592 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.066 0.934 44 H 0.066 0.934 45 H -0.012 1.012 46 H -0.011 1.011 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 22.422 19.027 29.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.114 0.886 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.152 4.152 7 C -0.169 4.169 8 C 0.114 3.886 9 C -0.222 4.222 10 N -0.376 5.376 11 C 0.399 3.601 12 O -0.508 6.508 13 N -0.392 5.392 14 C 0.029 3.971 15 C -0.132 4.132 16 C -0.029 4.029 17 C -0.655 4.655 18 H 0.076 0.924 19 C -0.240 4.240 20 N -0.578 5.578 21 Si 0.943 3.057 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.190 1.190 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.242 0.758 40 H 0.244 0.756 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.007 0.993 46 H 0.007 0.993 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.907 21.297 17.587 27.686 hybrid contribution 0.136 1.071 0.459 1.173 sum -1.771 22.368 18.046 28.794 Atomic orbital electron populations 1.21905 0.94005 1.02159 1.02643 1.21368 0.96503 1.00033 0.92333 0.88604 1.21611 0.95172 1.00722 0.97509 1.21519 0.95996 1.00920 0.96735 1.21438 0.99773 0.98955 0.95013 1.21952 0.95226 1.01306 0.98448 1.20217 0.92984 0.79477 0.95904 1.22257 1.01350 1.00577 0.97997 1.45165 1.56208 1.11790 1.24478 1.16164 0.80074 0.80955 0.82908 1.90837 1.44270 1.76607 1.39134 1.45061 1.56424 1.10307 1.27380 1.20980 0.98612 0.88793 0.88753 1.21461 1.00322 0.92153 0.99246 1.19112 0.94817 0.94891 0.94129 1.22507 1.34690 0.98062 1.10255 0.92426 1.27534 0.95777 1.08191 0.92520 1.70888 1.32748 1.25820 1.28348 0.82873 0.76126 0.70423 0.76228 1.19766 1.21059 1.18956 0.92787 0.90911 0.92425 0.92176 0.89866 0.91507 0.91062 0.93798 0.92703 0.93273 0.90343 0.91894 0.90595 0.93754 0.75790 0.75574 0.93770 0.93708 0.91497 0.91515 0.99329 0.99298 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.67 71.98 0.62 -0.89 16 2 C -0.08 -0.98 2.00 -10.79 -0.02 -1.00 16 3 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.11 -1.18 5.03 30.59 0.15 -1.03 16 5 C -0.11 -1.45 5.92 30.60 0.18 -1.27 16 6 C -0.11 -2.16 5.77 30.60 0.18 -1.98 16 7 C -0.13 -2.81 4.52 30.61 0.14 -2.67 16 8 C 0.20 3.74 0.35 3.62 0.00 3.74 16 9 C -0.16 -3.45 8.05 71.98 0.58 -2.88 16 10 N -0.72 -14.83 3.75 -437.95 -1.64 -16.47 16 11 C 0.70 20.89 7.99 179.05 1.43 22.32 16 12 O -0.63 -24.19 12.55 -3.98 -0.05 -24.24 16 13 N -0.74 -21.10 5.56 -478.53 -2.66 -23.76 16 14 C 0.15 5.62 5.67 86.38 0.49 6.11 16 15 C -0.09 -3.72 5.27 30.59 0.16 -3.56 16 16 C 0.01 0.43 4.28 29.85 0.13 0.56 16 17 C -0.62 -35.27 9.11 25.60 0.23 -35.04 16 18 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 19 C -0.04 -2.54 5.46 84.65 0.46 -2.08 16 20 N -0.94 -59.64 13.65 21.45 0.29 -59.35 16 21 Si 1.12 50.30 29.90 68.60 2.05 52.35 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 25 H 0.05 0.56 6.86 -2.39 -0.02 0.54 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.65 6.43 -2.39 -0.02 0.64 16 28 H 0.06 0.66 6.86 -2.39 -0.02 0.65 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 0.98 7.61 -2.39 -0.02 0.96 16 33 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.05 1.47 6.17 -2.39 -0.01 1.46 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.22 6.43 -2.39 -0.02 1.20 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 1.29 6.17 -2.39 -0.01 1.28 16 39 H 0.40 6.16 6.18 -92.71 -0.57 5.59 16 40 H 0.41 8.98 8.49 -92.71 -0.79 8.20 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 45 H -0.01 -0.65 8.01 -2.39 -0.02 -0.67 16 46 H -0.01 -0.64 8.01 -2.39 -0.02 -0.66 16 47 H 0.25 16.44 7.22 -92.71 -0.67 15.77 16 Total: -1.00 -72.52 354.69 2.42 -70.11 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -0.31 Total: 21.02 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 4.74 Total: -19.66 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -4.01 Total: -99.58 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.05 Total: -24.24 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.05 Total: 52.35 kcal Total: -72.52 2.42 -70.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458298943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.308 kcal (2) G-P(sol) polarization free energy of solvation -72.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds