Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46911 * 2 1 4 4 C 1.52998 * 109.46983 * 119.99786 * 2 1 3 5 5 C 1.52996 * 109.47238 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46919 * 300.00074 * 5 4 2 7 7 C 1.52998 * 109.47226 * 59.99919 * 6 5 4 8 8 C 1.52997 * 109.47134 * 240.00015 * 2 1 3 9 9 C 1.53000 * 109.46993 * 299.99354 * 8 2 1 10 10 N 1.46490 * 109.47432 * 59.99962 * 8 2 1 11 11 C 1.34776 * 120.00131 * 179.97438 * 10 8 2 12 12 O 1.21591 * 120.00195 * 0.02562 * 11 10 8 13 13 N 1.34777 * 120.00267 * 180.02562 * 11 10 8 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47299 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46886 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46912 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99751 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00001 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00094 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47171 * 89.99544 * 21 19 17 23 23 H 1.48500 * 109.46632 * 209.99795 * 21 19 17 24 24 H 1.48494 * 109.47053 * 329.99231 * 21 19 17 25 25 H 1.09003 * 109.46911 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47263 * 300.00098 * 1 2 3 27 27 H 1.09009 * 109.46804 * 60.00261 * 1 2 3 28 28 H 1.09010 * 109.47092 * 300.00290 * 4 2 1 29 29 H 1.08994 * 109.47107 * 60.00137 * 4 2 1 30 30 H 1.09003 * 109.47213 * 59.99873 * 5 4 2 31 31 H 1.09000 * 109.47166 * 180.02562 * 5 4 2 32 32 H 1.09004 * 109.47218 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47014 * 299.99921 * 6 5 4 34 34 H 1.08998 * 109.46917 * 180.02562 * 7 6 5 35 35 H 1.08994 * 109.47107 * 60.00273 * 7 6 5 36 36 H 1.08999 * 109.46830 * 179.97438 * 9 8 2 37 37 H 1.08997 * 109.47299 * 300.00714 * 9 8 2 38 38 H 1.09004 * 109.46523 * 60.00746 * 9 8 2 39 39 H 0.97004 * 120.00364 * 359.97438 * 10 8 2 40 40 H 0.97003 * 119.99640 * 0.02562 * 13 11 10 41 41 H 1.09001 * 109.46596 * 59.99898 * 14 13 11 42 42 H 1.09002 * 109.47129 * 300.00253 * 14 13 11 43 43 H 1.09001 * 109.46652 * 60.00269 * 15 14 13 44 44 H 1.08992 * 109.47514 * 300.00358 * 15 14 13 45 45 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 46 46 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 47 47 H 0.97000 * 120.00333 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2488 8 6 2.0400 -0.7212 -1.2492 9 6 1.5302 -2.1638 -1.2491 10 7 1.5518 -0.0307 -2.4453 11 6 1.8778 -0.4909 -3.6694 12 8 2.5769 -1.4795 -3.7810 13 7 1.4290 0.1447 -4.7699 14 6 1.7830 -0.3559 -6.1005 15 6 1.1498 0.5396 -7.1674 16 6 1.5200 0.0171 -8.5569 17 6 0.8968 0.8995 -9.6077 18 1 0.2971 1.7482 -9.3138 19 6 1.0923 0.6232 -10.9443 20 7 1.8230 -0.4100 -11.3022 21 14 0.3205 1.7174 -12.2469 22 1 1.2597 2.8148 -12.5915 23 1 0.0319 0.9130 -13.4613 24 1 -0.9438 2.2940 -11.7232 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6766 -0.2073 2.1393 29 1 1.6767 -1.7488 1.2493 30 1 3.9330 0.3071 1.2498 31 1 3.9333 -1.2349 2.1394 32 1 5.1705 -1.4417 0.0009 33 1 3.7175 -2.4694 0.0002 34 1 3.9339 -1.2343 -2.1388 35 1 3.9335 0.3073 -1.2487 36 1 1.8931 -2.6774 -2.1393 37 1 1.8935 -2.6775 -0.3591 38 1 0.4401 -2.1637 -1.2492 39 1 0.9938 0.7578 -2.3565 40 1 0.8716 0.9336 -4.6809 41 1 1.4131 -1.3747 -6.2156 42 1 2.8669 -0.3477 -6.2153 43 1 1.5193 1.5586 -7.0523 44 1 0.0660 0.5310 -7.0524 45 1 2.6039 0.0261 -8.6716 46 1 1.1508 -1.0019 -8.6722 47 1 1.9603 -0.6046 -12.2425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458298966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = -68.229891 kcal Electronic energy + Delta-G solvation = -22780.644751 eV Core-core repulsion = 19575.851966 eV Total energy + Delta-G solvation = -3204.792785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78740 -38.73451 -35.40561 -34.25744 -33.27355 -32.70501 -31.39415 -29.98423 -27.76044 -26.60078 -25.85433 -23.40478 -22.39298 -21.45257 -20.68652 -20.14959 -18.74890 -17.99172 -16.66918 -16.18043 -15.47973 -15.25853 -14.99028 -14.61521 -14.45008 -14.12817 -14.11001 -13.78566 -13.43803 -13.06989 -12.80137 -12.30076 -12.27804 -12.21642 -12.13611 -11.77181 -11.71753 -11.45522 -11.23940 -10.97543 -10.89533 -10.73718 -10.66702 -10.57591 -10.51148 -10.35082 -9.82879 -9.67687 -9.35010 -9.10305 -9.02285 -8.52402 -8.35801 -6.00463 -4.03478 2.88852 3.31515 3.37811 3.40665 3.46013 4.29166 4.39798 4.44028 4.47846 4.61725 4.83388 4.98390 5.08393 5.10719 5.18686 5.23906 5.35245 5.39825 5.46119 5.56252 5.62074 5.73649 5.75458 5.76396 5.78712 5.85359 5.88997 5.93663 5.97043 6.08865 6.16558 6.22527 6.32511 6.44976 6.59179 6.65953 6.70560 6.89000 7.06477 7.17115 7.65681 7.78913 7.98723 8.25878 8.39784 8.86888 9.03331 9.60562 11.10868 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041706 B = 0.002622 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.203702 B =10677.548405 C =11000.230894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.112 4.112 5 C -0.122 4.122 6 C -0.118 4.118 7 C -0.131 4.131 8 C 0.204 3.796 9 C -0.168 4.168 10 N -0.745 5.745 11 C 0.702 3.298 12 O -0.589 6.589 13 N -0.744 5.744 14 C 0.136 3.864 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.391 0.609 40 H 0.392 0.608 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 1.019 27.348 27.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.156 4.156 7 C -0.169 4.169 8 C 0.117 3.883 9 C -0.226 4.226 10 N -0.401 5.401 11 C 0.402 3.598 12 O -0.467 6.467 13 N -0.398 5.398 14 C 0.013 3.987 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.225 0.775 40 H 0.225 0.775 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.130 -0.009 27.049 27.050 hybrid contribution -0.944 1.417 -0.783 1.874 sum -0.814 1.409 26.266 26.316 Atomic orbital electron populations 1.21915 0.94871 1.02453 1.01571 1.21356 0.95890 0.99683 0.94198 0.90824 1.21605 0.95709 1.01019 0.96606 1.21581 0.95464 1.00840 0.98027 1.21570 1.00263 0.99750 0.94028 1.21995 0.94452 1.00975 0.99527 1.20011 0.93497 0.92168 0.82588 1.22388 1.00799 0.95880 1.03538 1.45348 1.57156 1.33258 1.04327 1.16021 0.80413 0.83069 0.80307 1.90845 1.42633 1.27420 1.85805 1.45430 1.56078 1.32583 1.05740 1.21472 1.00039 0.98326 0.78874 1.21882 0.99441 0.98143 0.96345 1.19026 0.97146 0.96639 0.88555 1.21209 1.31588 1.12208 0.91006 0.92681 1.25033 0.95342 0.95331 0.98786 1.69967 1.39107 1.27506 1.16719 0.86584 0.79615 0.80480 0.81250 1.20667 1.21208 1.19917 0.91983 0.92579 0.92638 0.91777 0.91301 0.92078 0.92043 0.91992 0.91520 0.89198 0.92433 0.90070 0.91769 0.92769 0.77483 0.77518 0.92067 0.92061 0.92851 0.92842 0.96272 0.96260 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.67 37.16 0.32 -0.71 16 2 C -0.09 -0.70 2.07 -90.62 -0.19 -0.89 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.75 4.93 -26.73 -0.13 -0.88 16 5 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 6 C -0.12 -1.04 5.65 -26.73 -0.15 -1.19 16 7 C -0.13 -1.46 4.66 -26.71 -0.12 -1.58 16 8 C 0.20 2.07 0.49 -131.80 -0.07 2.01 16 9 C -0.17 -1.85 7.36 37.16 0.27 -1.58 16 10 N -0.75 -8.27 4.81 -52.40 -0.25 -8.52 16 11 C 0.70 10.62 7.98 -86.92 -0.69 9.93 16 12 O -0.59 -11.02 12.55 5.29 0.07 -10.96 16 13 N -0.74 -10.93 5.56 -65.22 -0.36 -11.29 16 14 C 0.14 2.46 5.67 -4.04 -0.02 2.43 16 15 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.37 6.86 -51.92 -0.36 0.02 16 28 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 34 H 0.09 1.30 6.16 -51.93 -0.32 0.98 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.17 6.16 -51.93 -0.32 0.85 16 37 H 0.06 0.60 4.81 -51.93 -0.25 0.35 16 38 H 0.05 0.57 6.43 -51.93 -0.33 0.24 16 39 H 0.39 3.38 7.33 -40.82 -0.30 3.08 16 40 H 0.39 4.65 8.49 -40.82 -0.35 4.30 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 352.71 15.07 5.32 5.32 Total: -1.00 -31.88 352.71 -9.41 -41.29 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -8.26 Total: 2.86 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.63 Total: -8.99 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.12 Total: -46.09 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.88 -9.41 -41.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458298966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.938 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds