Wall clock time and date at job start Tue Mar 31 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46906 * 2 1 4 4 C 1.53001 * 109.46732 * 240.00758 * 2 1 3 5 5 C 1.53005 * 109.47081 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46973 * 59.99432 * 5 4 2 7 7 C 1.52991 * 109.47422 * 300.00486 * 6 5 4 8 8 C 1.52996 * 109.47079 * 120.00666 * 2 1 3 9 9 C 1.53002 * 109.47121 * 299.99431 * 8 2 1 10 10 N 1.46497 * 109.47450 * 59.99937 * 8 2 1 11 11 C 1.34776 * 120.00427 * 179.97438 * 10 8 2 12 12 O 1.21590 * 119.99449 * 359.97438 * 11 10 8 13 13 N 1.34770 * 120.00072 * 180.02562 * 11 10 8 14 14 C 1.46507 * 119.99912 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47485 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47294 * 60.00559 * 21 19 17 23 23 H 1.48503 * 109.46954 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47431 * 300.00157 * 21 19 17 25 25 H 1.09000 * 109.46685 * 299.99404 * 1 2 3 26 26 H 1.08999 * 109.47046 * 59.99385 * 1 2 3 27 27 H 1.08997 * 109.47232 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47472 * 60.00118 * 4 2 1 29 29 H 1.09003 * 109.47316 * 299.99320 * 4 2 1 30 30 H 1.08997 * 109.47089 * 300.00253 * 5 4 2 31 31 H 1.09000 * 109.47554 * 179.97438 * 5 4 2 32 32 H 1.08995 * 109.47132 * 179.97438 * 6 5 4 33 33 H 1.09007 * 109.46767 * 60.00487 * 6 5 4 34 34 H 1.09007 * 109.47150 * 299.99767 * 7 6 5 35 35 H 1.08999 * 109.47213 * 179.97438 * 7 6 5 36 36 H 1.08995 * 109.46699 * 180.02562 * 9 8 2 37 37 H 1.08992 * 109.47264 * 300.00635 * 9 8 2 38 38 H 1.09002 * 109.46425 * 60.00500 * 9 8 2 39 39 H 0.97005 * 119.99508 * 359.97438 * 10 8 2 40 40 H 0.96992 * 120.00518 * 359.97438 * 13 11 10 41 41 H 1.09002 * 109.47280 * 59.99618 * 14 13 11 42 42 H 1.09001 * 109.46702 * 299.99811 * 14 13 11 43 43 H 1.09002 * 109.47103 * 59.99596 * 15 14 13 44 44 H 1.08998 * 109.46862 * 300.00408 * 15 14 13 45 45 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 46 46 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 47 47 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5700 -0.7206 -1.2498 6 6 4.0805 -1.4416 -0.0005 7 6 3.5706 -0.7205 1.2487 8 6 2.0400 -0.7214 1.2491 9 6 1.5301 -0.0002 2.4985 10 7 1.5517 -2.1026 1.2490 11 6 1.8777 -2.9327 2.2595 12 8 2.5775 -2.5353 3.1710 13 7 1.4289 -4.2035 2.2591 14 6 1.7828 -5.1057 3.3578 15 6 1.1496 -6.4773 3.1156 16 6 1.5198 -7.4196 4.2627 17 6 0.8956 -8.7704 4.0244 18 1 0.2953 -8.9400 3.1428 19 6 1.0917 -9.7902 4.9314 20 7 1.8232 -9.5839 6.0047 21 14 0.3186 -11.4647 4.6357 22 1 0.8211 -12.0227 3.3545 23 1 0.6778 -12.3794 5.7491 24 1 -1.1582 -11.3233 4.5687 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6766 -0.2072 -2.1393 29 1 1.6767 -1.7488 -1.2495 30 1 3.9330 0.3072 -1.2498 31 1 3.9333 -1.2347 -2.1396 32 1 5.1705 -1.4416 -0.0010 33 1 3.7175 -2.4694 -0.0004 34 1 3.9336 0.3074 1.2486 35 1 3.9339 -1.2344 2.1386 36 1 1.8938 -0.5139 3.3883 37 1 1.8934 1.0274 2.4985 38 1 0.4401 -0.0002 2.4984 39 1 0.9937 -2.4196 0.5216 40 1 0.8709 -4.5206 1.5318 41 1 1.4130 -4.6961 4.2978 42 1 2.8667 -5.2093 3.4080 43 1 1.5190 -6.8871 2.1756 44 1 0.0658 -6.3733 3.0656 45 1 1.1507 -7.0100 5.2030 46 1 2.6037 -7.5235 4.3122 47 1 1.9608 -10.3012 6.6430 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458298969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:36 Heat of formation + Delta-G solvation = -69.282816 kcal Electronic energy + Delta-G solvation = -23024.027756 eV Core-core repulsion = 19819.189312 eV Total energy + Delta-G solvation = -3204.838443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.83621 -38.51974 -35.35163 -33.99279 -33.30601 -32.72445 -31.65436 -30.38775 -27.48333 -26.57303 -25.73013 -23.26352 -22.21192 -21.09573 -20.92196 -20.47228 -19.04544 -18.13966 -16.43473 -15.81877 -15.42166 -15.20869 -14.85677 -14.62827 -14.40138 -14.32727 -14.13865 -13.83869 -13.58037 -13.06743 -12.52524 -12.25908 -12.16339 -12.10045 -11.94640 -11.87644 -11.75431 -11.68984 -11.44288 -11.11481 -10.86947 -10.76011 -10.68746 -10.60196 -10.36197 -10.27630 -9.82386 -9.66825 -9.35073 -9.11322 -8.99591 -8.51137 -8.35403 -6.00184 -4.03290 2.92184 3.32874 3.37608 3.39548 3.47844 4.31400 4.41752 4.45616 4.49943 4.53336 4.87478 4.90192 5.13522 5.16308 5.25471 5.32609 5.35425 5.35552 5.53121 5.55731 5.60976 5.70129 5.75194 5.78474 5.82715 5.85657 5.87799 5.96876 5.98725 6.10477 6.21561 6.23413 6.32370 6.38442 6.59713 6.66158 6.73180 6.89334 7.06841 7.18161 7.65584 7.79096 7.98888 8.27119 8.39960 8.88479 9.03300 9.60676 11.11108 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030970 B = 0.002842 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.874533 B = 9851.140587 C = 9911.095082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 H 0.083 0.917 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.132 4.132 8 C 0.204 3.796 9 C -0.167 4.167 10 N -0.740 5.740 11 C 0.702 3.298 12 O -0.589 6.589 13 N -0.745 5.745 14 C 0.137 3.863 15 C -0.120 4.120 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.054 0.946 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.391 0.609 40 H 0.391 0.609 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 21.415 -15.522 26.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 H 0.101 0.899 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.170 4.170 8 C 0.117 3.883 9 C -0.225 4.225 10 N -0.396 5.396 11 C 0.402 3.598 12 O -0.468 6.468 13 N -0.399 5.399 14 C 0.013 3.987 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.225 0.775 40 H 0.224 0.776 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.122 21.681 -14.484 26.075 hybrid contribution -0.953 -1.320 -0.808 1.817 sum -0.831 20.361 -15.292 25.478 Atomic orbital electron populations 1.21905 0.94872 1.02015 1.01992 1.21404 0.95904 0.99875 0.93962 0.89888 1.21598 0.95902 1.00597 0.97086 1.21548 0.95363 1.00643 0.98092 1.21464 0.99933 0.99806 0.94148 1.22005 0.94450 1.00876 0.99695 1.20035 0.93518 0.80135 0.94571 1.22304 1.01000 0.99912 0.99270 1.45304 1.56986 1.11874 1.25484 1.16007 0.80412 0.80837 0.82520 1.90842 1.42608 1.75949 1.37358 1.45422 1.56083 1.10605 1.27763 1.21461 1.00016 0.89126 0.88062 1.21881 0.99434 0.92832 1.01677 1.19017 0.97125 0.92850 0.92315 1.21176 1.31613 0.96107 1.07231 0.92732 1.25027 0.95313 0.98930 0.95180 1.69957 1.38976 1.33020 1.11335 0.86646 0.79693 0.83857 0.77713 1.20253 1.21272 1.20259 0.91985 0.92592 0.92665 0.91902 0.91988 0.92150 0.92221 0.92323 0.91951 0.91821 0.89196 0.89925 0.92409 0.92575 0.77481 0.77572 0.92091 0.92082 0.92864 0.92857 0.96284 0.96280 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.67 37.16 0.32 -0.69 16 2 C -0.09 -0.68 2.00 -90.62 -0.18 -0.87 16 3 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.11 -0.80 5.03 -26.73 -0.13 -0.93 16 5 C -0.12 -0.92 5.92 -26.73 -0.16 -1.07 16 6 C -0.12 -1.15 5.77 -26.73 -0.15 -1.30 16 7 C -0.13 -1.44 4.52 -26.71 -0.12 -1.56 16 8 C 0.20 2.03 0.35 -131.79 -0.05 1.99 16 9 C -0.17 -1.81 8.05 37.16 0.30 -1.51 16 10 N -0.74 -8.00 3.75 -52.39 -0.20 -8.20 16 11 C 0.70 10.45 7.99 -86.92 -0.69 9.76 16 12 O -0.59 -10.91 12.55 5.29 0.07 -10.84 16 13 N -0.74 -10.83 5.56 -65.22 -0.36 -11.20 16 14 C 0.14 2.46 5.67 -4.04 -0.02 2.43 16 15 C -0.12 -2.38 5.27 -26.74 -0.14 -2.52 16 16 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 17 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 21 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.37 6.86 -51.93 -0.36 0.02 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 6.86 -51.93 -0.36 0.09 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.71 7.61 -51.93 -0.39 0.31 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.29 6.16 -51.93 -0.32 0.97 16 36 H 0.08 1.17 6.17 -51.93 -0.32 0.85 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 39 H 0.39 3.39 6.18 -40.82 -0.25 3.14 16 40 H 0.39 4.62 8.49 -40.82 -0.35 4.28 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 356.01 15.07 5.36 5.36 Total: -1.00 -31.62 356.01 -9.47 -41.09 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -8.47 Total: 2.75 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -1.58 Total: -9.27 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.18 Total: -45.65 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.07 Total: -10.84 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.62 -9.47 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458298969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.195 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds