Wall clock time and date at job start Tue Mar 31 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46906 * 2 1 4 4 C 1.53001 * 109.46732 * 240.00758 * 2 1 3 5 5 C 1.53005 * 109.47081 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46973 * 59.99432 * 5 4 2 7 7 C 1.52991 * 109.47422 * 300.00486 * 6 5 4 8 8 C 1.52996 * 109.47079 * 120.00666 * 2 1 3 9 9 C 1.53002 * 109.47121 * 299.99431 * 8 2 1 10 10 N 1.46497 * 109.47450 * 59.99937 * 8 2 1 11 11 C 1.34776 * 120.00427 * 179.97438 * 10 8 2 12 12 O 1.21590 * 119.99449 * 359.97438 * 11 10 8 13 13 N 1.34770 * 120.00072 * 180.02562 * 11 10 8 14 14 C 1.46507 * 119.99912 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47485 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47294 * 60.00559 * 21 19 17 23 23 H 1.48503 * 109.46954 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47431 * 300.00157 * 21 19 17 25 25 H 1.09000 * 109.46685 * 299.99404 * 1 2 3 26 26 H 1.08999 * 109.47046 * 59.99385 * 1 2 3 27 27 H 1.08997 * 109.47232 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47472 * 60.00118 * 4 2 1 29 29 H 1.09003 * 109.47316 * 299.99320 * 4 2 1 30 30 H 1.08997 * 109.47089 * 300.00253 * 5 4 2 31 31 H 1.09000 * 109.47554 * 179.97438 * 5 4 2 32 32 H 1.08995 * 109.47132 * 179.97438 * 6 5 4 33 33 H 1.09007 * 109.46767 * 60.00487 * 6 5 4 34 34 H 1.09007 * 109.47150 * 299.99767 * 7 6 5 35 35 H 1.08999 * 109.47213 * 179.97438 * 7 6 5 36 36 H 1.08995 * 109.46699 * 180.02562 * 9 8 2 37 37 H 1.08992 * 109.47264 * 300.00635 * 9 8 2 38 38 H 1.09002 * 109.46425 * 60.00500 * 9 8 2 39 39 H 0.97005 * 119.99508 * 359.97438 * 10 8 2 40 40 H 0.96992 * 120.00518 * 359.97438 * 13 11 10 41 41 H 1.09002 * 109.47280 * 59.99618 * 14 13 11 42 42 H 1.09001 * 109.46702 * 299.99811 * 14 13 11 43 43 H 1.09002 * 109.47103 * 59.99596 * 15 14 13 44 44 H 1.08998 * 109.46862 * 300.00408 * 15 14 13 45 45 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 46 46 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 47 47 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5700 -0.7206 -1.2498 6 6 4.0805 -1.4416 -0.0005 7 6 3.5706 -0.7205 1.2487 8 6 2.0400 -0.7214 1.2491 9 6 1.5301 -0.0002 2.4985 10 7 1.5517 -2.1026 1.2490 11 6 1.8777 -2.9327 2.2595 12 8 2.5775 -2.5353 3.1710 13 7 1.4289 -4.2035 2.2591 14 6 1.7828 -5.1057 3.3578 15 6 1.1496 -6.4773 3.1156 16 6 1.5198 -7.4196 4.2627 17 6 0.8956 -8.7704 4.0244 18 1 0.2953 -8.9400 3.1428 19 6 1.0917 -9.7902 4.9314 20 7 1.8232 -9.5839 6.0047 21 14 0.3186 -11.4647 4.6357 22 1 0.8211 -12.0227 3.3545 23 1 0.6778 -12.3794 5.7491 24 1 -1.1582 -11.3233 4.5687 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6766 -0.2072 -2.1393 29 1 1.6767 -1.7488 -1.2495 30 1 3.9330 0.3072 -1.2498 31 1 3.9333 -1.2347 -2.1396 32 1 5.1705 -1.4416 -0.0010 33 1 3.7175 -2.4694 -0.0004 34 1 3.9336 0.3074 1.2486 35 1 3.9339 -1.2344 2.1386 36 1 1.8938 -0.5139 3.3883 37 1 1.8934 1.0274 2.4985 38 1 0.4401 -0.0002 2.4984 39 1 0.9937 -2.4196 0.5216 40 1 0.8709 -4.5206 1.5318 41 1 1.4130 -4.6961 4.2978 42 1 2.8667 -5.2093 3.4080 43 1 1.5190 -6.8871 2.1756 44 1 0.0658 -6.3733 3.0656 45 1 1.1507 -7.0100 5.2030 46 1 2.6037 -7.5235 4.3122 47 1 1.9608 -10.3012 6.6430 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458298969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:36 Heat of formation + Delta-G solvation = -88.669699 kcal Electronic energy + Delta-G solvation = -23024.868434 eV Core-core repulsion = 19819.189312 eV Total energy + Delta-G solvation = -3205.679122 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80141 -39.56940 -36.89745 -35.17274 -34.89650 -33.53645 -33.10127 -31.66621 -28.42482 -28.16098 -26.47817 -25.02773 -23.11506 -22.28056 -21.95223 -21.75982 -19.98166 -19.29730 -18.50408 -16.94541 -16.73492 -16.49911 -16.05963 -15.82307 -15.66458 -15.34892 -14.98248 -14.77765 -14.75561 -14.23388 -13.79301 -13.70821 -13.61894 -13.22823 -12.90355 -12.85422 -12.71353 -12.65908 -12.53721 -12.47366 -12.38224 -12.24678 -11.78077 -11.65261 -11.57717 -11.43243 -11.28478 -11.16639 -11.00274 -10.58308 -10.54600 -10.18795 -9.66904 -8.19065 -6.30880 1.41640 1.45000 1.52808 1.80074 2.26596 2.42387 3.14489 3.35271 3.68149 3.81217 3.82769 4.16477 4.18660 4.19427 4.24460 4.45943 4.48841 4.56902 4.57281 4.65154 4.71190 4.77915 4.88681 4.92964 4.97010 5.00505 5.02630 5.11610 5.16817 5.19204 5.21647 5.24522 5.31645 5.39005 5.44101 5.49847 5.52440 5.57076 5.63363 5.71442 5.79923 5.84479 6.11293 6.23158 6.86330 7.21429 7.38701 7.71620 8.92986 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030970 B = 0.002842 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.874533 B = 9851.140587 C = 9911.095082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 H 0.095 0.905 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.114 4.114 7 C -0.131 4.131 8 C 0.200 3.800 9 C -0.164 4.164 10 N -0.720 5.720 11 C 0.698 3.302 12 O -0.628 6.628 13 N -0.735 5.735 14 C 0.153 3.847 15 C -0.100 4.100 16 C 0.025 3.975 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.004 4.004 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.265 1.265 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.405 0.595 40 H 0.408 0.592 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.066 0.934 44 H 0.067 0.933 45 H -0.009 1.009 46 H -0.009 1.009 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 22.029 -18.484 28.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.113 0.887 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.152 4.152 7 C -0.169 4.169 8 C 0.114 3.886 9 C -0.222 4.222 10 N -0.377 5.377 11 C 0.398 3.602 12 O -0.509 6.509 13 N -0.391 5.391 14 C 0.028 3.972 15 C -0.138 4.138 16 C -0.013 4.013 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.190 1.190 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.242 0.758 40 H 0.244 0.756 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.010 0.990 46 H 0.009 0.991 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.531 22.317 -17.513 28.409 hybrid contribution -0.395 -1.441 0.145 1.501 sum -1.926 20.876 -17.368 27.224 Atomic orbital electron populations 1.21904 0.94009 1.02179 1.02610 1.21365 0.96501 1.00008 0.92366 0.88665 1.21613 0.95164 1.00744 0.97485 1.21521 0.96007 1.00888 0.96750 1.21436 0.99758 0.98991 0.94993 1.21951 0.95257 1.01260 0.98467 1.20208 0.92964 0.79542 0.95856 1.22257 1.01343 1.00540 0.98038 1.45161 1.56247 1.11769 1.24526 1.16175 0.80089 0.81011 0.82878 1.90838 1.44278 1.76642 1.39152 1.45084 1.56415 1.10243 1.27381 1.20994 0.98642 0.88932 0.88597 1.21577 1.00296 0.92247 0.99650 1.18928 0.95120 0.93808 0.93451 1.21661 1.31666 0.97087 1.07626 0.91505 1.26040 0.95771 1.03525 0.94800 1.70111 1.40537 1.34468 1.12474 0.85458 0.79117 0.78310 0.77896 1.18975 1.21161 1.18975 0.92438 0.90949 0.92745 0.89905 0.92134 0.91106 0.91516 0.92726 0.93747 0.90403 0.93245 0.93729 0.90657 0.91896 0.75805 0.75586 0.93781 0.93850 0.91502 0.91446 0.99042 0.99063 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.67 71.98 0.62 -0.91 16 2 C -0.08 -0.99 2.00 -10.79 -0.02 -1.01 16 3 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.11 -1.19 5.03 30.60 0.15 -1.04 16 5 C -0.11 -1.46 5.92 30.60 0.18 -1.28 16 6 C -0.11 -2.18 5.77 30.59 0.18 -2.00 16 7 C -0.13 -2.84 4.52 30.61 0.14 -2.70 16 8 C 0.20 3.78 0.35 3.62 0.00 3.78 16 9 C -0.16 -3.49 8.05 71.98 0.58 -2.91 16 10 N -0.72 -14.94 3.75 -437.93 -1.64 -16.58 16 11 C 0.70 21.01 7.99 179.06 1.43 22.44 16 12 O -0.63 -24.41 12.55 -4.00 -0.05 -24.46 16 13 N -0.74 -21.16 5.56 -478.54 -2.66 -23.82 16 14 C 0.15 5.64 5.67 86.38 0.49 6.13 16 15 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 16 C 0.02 1.31 4.97 29.85 0.15 1.45 16 17 C -0.54 -30.60 9.11 25.60 0.23 -30.36 16 18 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 19 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 20 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 21 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 25 H 0.06 0.66 6.43 -2.39 -0.02 0.64 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.57 6.86 -2.39 -0.02 0.55 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.67 6.86 -2.39 -0.02 0.66 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.04 0.99 7.61 -2.38 -0.02 0.97 16 34 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.05 1.49 6.16 -2.39 -0.01 1.48 16 36 H 0.04 1.31 6.17 -2.39 -0.01 1.30 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.23 6.43 -2.39 -0.02 1.21 16 39 H 0.40 6.19 6.18 -92.70 -0.57 5.62 16 40 H 0.41 8.95 8.49 -92.71 -0.79 8.16 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 45 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 46 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 47 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -70.92 356.01 2.30 -68.62 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.41 Total: 19.62 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 4.76 Total: -11.93 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -4.02 Total: -97.93 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -70.92 2.30 -68.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458298969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.047 kcal (2) G-P(sol) polarization free energy of solvation -70.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds