Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46933 * 2 1 4 4 C 1.53005 * 109.47016 * 240.00310 * 2 1 3 5 5 C 1.53000 * 109.46743 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47451 * 59.99828 * 5 4 2 7 7 C 1.52999 * 109.46999 * 299.99836 * 6 5 4 8 8 C 1.52995 * 109.47098 * 120.00188 * 2 1 3 9 9 C 1.53000 * 109.47117 * 60.00036 * 8 2 1 10 10 N 1.46501 * 109.47251 * 300.00109 * 8 2 1 11 11 C 1.34779 * 120.00058 * 179.97438 * 10 8 2 12 12 O 1.21585 * 119.99998 * 0.02562 * 11 10 8 13 13 N 1.34778 * 119.99865 * 179.97438 * 11 10 8 14 14 C 1.46498 * 120.00064 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47313 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47367 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.46995 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00449 * 359.72153 * 17 16 15 19 19 C 1.37885 * 119.99686 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00035 * 179.72339 * 19 17 16 21 21 Si 1.86803 * 119.99853 * 359.72191 * 19 17 16 22 22 H 1.48500 * 109.46986 * 90.00256 * 21 19 17 23 23 H 1.48496 * 109.47029 * 210.00273 * 21 19 17 24 24 H 1.48499 * 109.47352 * 330.00102 * 21 19 17 25 25 H 1.08994 * 109.47543 * 299.99939 * 1 2 3 26 26 H 1.09007 * 109.47118 * 60.00040 * 1 2 3 27 27 H 1.09003 * 109.47345 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47281 * 59.99858 * 4 2 1 29 29 H 1.09005 * 109.46868 * 299.99918 * 4 2 1 30 30 H 1.08997 * 109.46853 * 299.99473 * 5 4 2 31 31 H 1.09001 * 109.46615 * 179.97438 * 5 4 2 32 32 H 1.08999 * 109.47405 * 179.97438 * 6 5 4 33 33 H 1.09005 * 109.47228 * 59.99693 * 6 5 4 34 34 H 1.08990 * 109.47221 * 299.99587 * 7 6 5 35 35 H 1.09007 * 109.47172 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47243 * 300.00125 * 9 8 2 37 37 H 1.09001 * 109.47297 * 59.99770 * 9 8 2 38 38 H 1.08998 * 109.47467 * 180.02562 * 9 8 2 39 39 H 0.96995 * 119.99920 * 359.97438 * 10 8 2 40 40 H 0.96998 * 119.99560 * 0.02562 * 13 11 10 41 41 H 1.08998 * 109.47084 * 59.99574 * 14 13 11 42 42 H 1.09001 * 109.46927 * 299.99804 * 14 13 11 43 43 H 1.08998 * 109.47353 * 59.99788 * 15 14 13 44 44 H 1.09006 * 109.47395 * 300.00044 * 15 14 13 45 45 H 1.08998 * 109.47065 * 59.99602 * 16 15 14 46 46 H 1.09001 * 109.46892 * 299.99866 * 16 15 14 47 47 H 0.97000 * 119.99706 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2489 6 6 4.0795 -1.4433 0.0002 7 6 3.5695 -0.7221 1.2495 8 6 2.0400 -0.7213 1.2492 9 6 1.5300 -2.1638 1.2491 10 7 1.5516 -0.0307 2.4454 11 6 1.8768 -0.4916 3.6695 12 8 2.5758 -1.4801 3.7810 13 7 1.4279 0.1441 4.7700 14 6 1.7818 -0.3565 6.1005 15 6 1.1497 0.5397 7.1673 16 6 1.5198 0.0173 8.5570 17 6 0.8966 0.8997 9.6077 18 1 0.3003 1.7507 9.3138 19 6 1.0920 0.6234 10.9443 20 7 0.5527 1.3965 11.8613 21 14 2.1229 -0.8492 11.4527 22 1 3.5433 -0.4369 11.5855 23 1 1.6346 -1.3694 12.7550 24 1 2.0103 -1.9119 10.4216 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6766 -0.2074 -2.1393 29 1 1.6766 -1.7489 -1.2493 30 1 3.9336 0.3058 -1.2487 31 1 3.9333 -1.2359 -2.1387 32 1 5.1695 -1.4441 0.0003 33 1 3.7158 -2.4709 0.0000 34 1 3.9332 0.3053 1.2497 35 1 3.9321 -1.2365 2.1395 36 1 0.4399 -2.1638 1.2491 37 1 1.8933 -2.6776 0.3591 38 1 1.8929 -2.6775 2.1393 39 1 0.9943 0.7581 2.3564 40 1 0.8706 0.9329 4.6809 41 1 2.8657 -0.3483 6.2153 42 1 1.4119 -1.3753 6.2156 43 1 0.0658 0.5319 7.0527 44 1 1.5199 1.5584 7.0521 45 1 2.6037 0.0254 8.6713 46 1 1.1499 -1.0015 8.6725 47 1 0.6899 1.2019 12.8017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458298973.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = -64.729859 kcal Electronic energy + Delta-G solvation = -22838.683146 eV Core-core repulsion = 19634.042133 eV Total energy + Delta-G solvation = -3204.641012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84167 -38.79954 -35.53010 -34.30946 -33.27739 -32.74251 -31.57032 -30.15707 -27.79484 -27.00098 -25.91570 -23.33519 -22.31700 -21.48275 -20.73394 -20.09591 -18.79141 -18.06890 -16.88757 -16.41367 -15.55345 -15.32128 -15.10531 -14.66670 -14.38114 -14.21459 -13.96517 -13.85516 -13.47603 -13.10108 -12.84823 -12.67515 -12.34789 -12.26946 -12.17656 -11.97411 -11.87939 -11.50242 -11.27983 -11.04108 -11.00792 -10.88223 -10.74910 -10.54710 -10.41203 -10.07747 -9.89050 -9.72888 -9.50929 -9.21282 -9.08557 -8.60917 -8.54268 -6.05308 -4.03836 2.82280 3.32546 3.38923 3.39973 3.44749 4.24481 4.36286 4.41791 4.45685 4.58082 4.80098 4.94814 5.05014 5.07188 5.15421 5.20661 5.28967 5.36914 5.42903 5.53107 5.55837 5.62258 5.72233 5.72384 5.73427 5.74381 5.85496 5.90332 5.93984 6.04947 6.07247 6.12562 6.27422 6.40225 6.43430 6.49952 6.65076 6.75502 6.87896 7.08743 7.25601 7.38811 7.77245 8.18991 8.51496 8.79637 8.98676 9.57111 11.07964 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038087 B = 0.002794 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.986538 B =10018.244386 C =10398.311017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.112 4.112 5 C -0.122 4.122 6 C -0.118 4.118 7 C -0.131 4.131 8 C 0.204 3.796 9 C -0.168 4.168 10 N -0.744 5.744 11 C 0.703 3.297 12 O -0.589 6.589 13 N -0.744 5.744 14 C 0.134 3.866 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.521 4.521 18 H 0.071 0.929 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.392 0.608 40 H 0.394 0.606 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.014 0.986 46 H 0.019 0.981 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.329 -3.166 -28.941 29.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.156 4.156 7 C -0.169 4.169 8 C 0.117 3.883 9 C -0.226 4.226 10 N -0.400 5.400 11 C 0.403 3.597 12 O -0.468 6.468 13 N -0.398 5.398 14 C 0.011 3.989 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.559 4.559 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.226 0.774 40 H 0.227 0.773 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.033 0.967 46 H 0.037 0.963 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.960 -4.070 -28.607 29.046 hybrid contribution -0.061 0.189 0.414 0.459 sum 2.898 -3.882 -28.194 28.607 Atomic orbital electron populations 1.21914 0.94835 1.02453 1.01618 1.21354 0.95918 0.99696 0.94156 0.90791 1.21608 0.95697 1.01017 0.96625 1.21580 0.95475 1.00854 0.98015 1.21568 1.00265 0.99736 0.94033 1.21979 0.94450 1.00998 0.99521 1.20002 0.93508 0.92173 0.82593 1.22391 1.00830 0.95871 1.03523 1.45346 1.57153 1.33210 1.04300 1.16004 0.80371 0.83032 0.80319 1.90840 1.42674 1.27460 1.85831 1.45375 1.56166 1.32677 1.05611 1.21473 0.99984 0.98281 0.79197 1.21700 1.00029 0.98391 0.94957 1.19498 0.96559 0.97043 0.91785 1.21103 1.32160 1.12780 0.89897 0.91042 1.25033 0.95456 0.96379 0.96645 1.69915 1.45061 1.38576 1.00718 0.86771 0.80748 0.83732 0.78036 1.20247 1.21395 1.18851 0.92616 0.92546 0.91992 0.91734 0.91310 0.92057 0.92027 0.91993 0.91529 0.92412 0.89237 0.92744 0.91742 0.90117 0.77403 0.77337 0.92086 0.92074 0.92198 0.92233 0.96745 0.96294 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.67 37.16 0.32 -0.67 16 2 C -0.09 -0.67 2.07 -90.62 -0.19 -0.86 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.72 4.93 -26.73 -0.13 -0.86 16 5 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 6 C -0.12 -1.00 5.65 -26.73 -0.15 -1.15 16 7 C -0.13 -1.40 4.66 -26.76 -0.12 -1.53 16 8 C 0.20 1.99 0.50 -131.85 -0.07 1.92 16 9 C -0.17 -1.78 7.35 37.16 0.27 -1.51 16 10 N -0.74 -7.92 4.81 -52.44 -0.25 -8.18 16 11 C 0.70 10.18 7.98 -86.91 -0.69 9.49 16 12 O -0.59 -10.59 12.54 5.29 0.07 -10.53 16 13 N -0.74 -10.39 5.56 -65.23 -0.36 -10.75 16 14 C 0.13 2.26 5.67 -4.05 -0.02 2.24 16 15 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 16 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 17 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 18 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 21 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 25 H 0.05 0.36 6.86 -51.93 -0.36 0.01 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.46 6.43 -51.93 -0.33 0.12 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.25 6.16 -51.93 -0.32 0.93 16 36 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 37 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 38 H 0.08 1.12 6.16 -51.93 -0.32 0.80 16 39 H 0.39 3.23 7.33 -40.82 -0.30 2.93 16 40 H 0.39 4.45 8.49 -40.82 -0.35 4.10 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.01 0.34 7.58 -51.93 -0.39 -0.06 16 46 H 0.02 0.45 7.19 -51.93 -0.37 0.07 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -32.26 349.09 -9.04 -41.30 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -8.23 Total: 2.62 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.62 Total: -9.82 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.16 Total: -46.05 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.26 -9.04 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458298973.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.427 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds