Wall clock time and date at job start Tue Mar 31 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46933 * 2 1 4 4 C 1.53005 * 109.47016 * 240.00310 * 2 1 3 5 5 C 1.53000 * 109.46743 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47451 * 59.99828 * 5 4 2 7 7 C 1.52999 * 109.46999 * 299.99836 * 6 5 4 8 8 C 1.52995 * 109.47098 * 120.00188 * 2 1 3 9 9 C 1.53000 * 109.47117 * 60.00036 * 8 2 1 10 10 N 1.46501 * 109.47251 * 300.00109 * 8 2 1 11 11 C 1.34779 * 120.00058 * 179.97438 * 10 8 2 12 12 O 1.21585 * 119.99998 * 0.02562 * 11 10 8 13 13 N 1.34778 * 119.99865 * 179.97438 * 11 10 8 14 14 C 1.46498 * 120.00064 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47313 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47367 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.46995 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00449 * 359.72153 * 17 16 15 19 19 C 1.37885 * 119.99686 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00035 * 179.72339 * 19 17 16 21 21 Si 1.86803 * 119.99853 * 359.72191 * 19 17 16 22 22 H 1.48500 * 109.46986 * 90.00256 * 21 19 17 23 23 H 1.48496 * 109.47029 * 210.00273 * 21 19 17 24 24 H 1.48499 * 109.47352 * 330.00102 * 21 19 17 25 25 H 1.08994 * 109.47543 * 299.99939 * 1 2 3 26 26 H 1.09007 * 109.47118 * 60.00040 * 1 2 3 27 27 H 1.09003 * 109.47345 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47281 * 59.99858 * 4 2 1 29 29 H 1.09005 * 109.46868 * 299.99918 * 4 2 1 30 30 H 1.08997 * 109.46853 * 299.99473 * 5 4 2 31 31 H 1.09001 * 109.46615 * 179.97438 * 5 4 2 32 32 H 1.08999 * 109.47405 * 179.97438 * 6 5 4 33 33 H 1.09005 * 109.47228 * 59.99693 * 6 5 4 34 34 H 1.08990 * 109.47221 * 299.99587 * 7 6 5 35 35 H 1.09007 * 109.47172 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47243 * 300.00125 * 9 8 2 37 37 H 1.09001 * 109.47297 * 59.99770 * 9 8 2 38 38 H 1.08998 * 109.47467 * 180.02562 * 9 8 2 39 39 H 0.96995 * 119.99920 * 359.97438 * 10 8 2 40 40 H 0.96998 * 119.99560 * 0.02562 * 13 11 10 41 41 H 1.08998 * 109.47084 * 59.99574 * 14 13 11 42 42 H 1.09001 * 109.46927 * 299.99804 * 14 13 11 43 43 H 1.08998 * 109.47353 * 59.99788 * 15 14 13 44 44 H 1.09006 * 109.47395 * 300.00044 * 15 14 13 45 45 H 1.08998 * 109.47065 * 59.99602 * 16 15 14 46 46 H 1.09001 * 109.46892 * 299.99866 * 16 15 14 47 47 H 0.97000 * 119.99706 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2489 6 6 4.0795 -1.4433 0.0002 7 6 3.5695 -0.7221 1.2495 8 6 2.0400 -0.7213 1.2492 9 6 1.5300 -2.1638 1.2491 10 7 1.5516 -0.0307 2.4454 11 6 1.8768 -0.4916 3.6695 12 8 2.5758 -1.4801 3.7810 13 7 1.4279 0.1441 4.7700 14 6 1.7818 -0.3565 6.1005 15 6 1.1497 0.5397 7.1673 16 6 1.5198 0.0173 8.5570 17 6 0.8966 0.8997 9.6077 18 1 0.3003 1.7507 9.3138 19 6 1.0920 0.6234 10.9443 20 7 0.5527 1.3965 11.8613 21 14 2.1229 -0.8492 11.4527 22 1 3.5433 -0.4369 11.5855 23 1 1.6346 -1.3694 12.7550 24 1 2.0103 -1.9119 10.4216 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6766 -0.2074 -2.1393 29 1 1.6766 -1.7489 -1.2493 30 1 3.9336 0.3058 -1.2487 31 1 3.9333 -1.2359 -2.1387 32 1 5.1695 -1.4441 0.0003 33 1 3.7158 -2.4709 0.0000 34 1 3.9332 0.3053 1.2497 35 1 3.9321 -1.2365 2.1395 36 1 0.4399 -2.1638 1.2491 37 1 1.8933 -2.6776 0.3591 38 1 1.8929 -2.6775 2.1393 39 1 0.9943 0.7581 2.3564 40 1 0.8706 0.9329 4.6809 41 1 2.8657 -0.3483 6.2153 42 1 1.4119 -1.3753 6.2156 43 1 0.0658 0.5319 7.0527 44 1 1.5199 1.5584 7.0521 45 1 2.6037 0.0254 8.6713 46 1 1.1499 -1.0015 8.6725 47 1 0.6899 1.2019 12.8017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458298973.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:38 Heat of formation + Delta-G solvation = -85.785277 kcal Electronic energy + Delta-G solvation = -22839.596177 eV Core-core repulsion = 19634.042133 eV Total energy + Delta-G solvation = -3205.554044 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.75382 -39.77309 -36.97173 -35.24376 -35.09944 -33.45261 -33.24977 -31.18292 -28.69801 -28.50800 -26.61772 -24.80572 -23.35586 -22.22908 -22.14715 -21.37702 -19.57574 -19.20587 -18.84984 -17.44896 -16.77274 -16.47550 -16.11004 -15.94951 -15.64276 -15.25652 -15.14435 -14.81500 -14.74819 -14.22843 -13.83991 -13.79472 -13.70901 -13.39954 -13.14235 -12.93377 -12.80490 -12.72292 -12.68244 -12.19083 -12.01326 -11.88925 -11.76053 -11.65787 -11.58555 -11.48395 -11.32501 -11.23373 -11.08711 -10.76236 -10.60577 -10.20620 -9.69428 -8.29544 -6.33254 1.36909 1.38483 1.50557 1.77605 2.23773 2.36429 3.06246 3.31182 3.66207 3.76762 3.94727 4.11731 4.17464 4.22829 4.27124 4.34200 4.42297 4.52187 4.52313 4.59046 4.72908 4.80653 4.87023 4.91344 4.93719 4.97105 5.01390 5.04363 5.11845 5.15093 5.20680 5.30874 5.30928 5.33864 5.42283 5.45843 5.47326 5.56641 5.59433 5.65102 5.68067 5.75876 6.10180 6.27641 6.74663 7.18697 7.31591 7.68696 8.86892 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038087 B = 0.002794 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.986538 B =10018.244386 C =10398.311017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 H 0.081 0.919 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.129 4.129 8 C 0.200 3.800 9 C -0.163 4.163 10 N -0.729 5.729 11 C 0.699 3.301 12 O -0.626 6.626 13 N -0.737 5.737 14 C 0.149 3.851 15 C -0.098 4.098 16 C -0.012 4.012 17 C -0.530 4.530 18 H 0.038 0.962 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.248 1.248 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.406 0.594 40 H 0.408 0.592 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.019 0.981 46 H 0.020 0.980 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 -3.531 -31.407 31.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.099 0.901 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.167 4.167 8 C 0.114 3.886 9 C -0.221 4.221 10 N -0.385 5.385 11 C 0.398 3.602 12 O -0.507 6.507 13 N -0.393 5.393 14 C 0.025 3.975 15 C -0.136 4.136 16 C -0.050 4.050 17 C -0.568 4.568 18 H 0.056 0.944 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.172 1.172 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.243 0.757 40 H 0.244 0.756 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.037 0.963 46 H 0.039 0.961 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.135 -4.400 -31.123 31.589 hybrid contribution -0.156 0.364 1.147 1.213 sum 2.979 -4.035 -29.976 30.393 Atomic orbital electron populations 1.21915 0.94029 1.02392 1.02408 1.21324 0.96488 0.99685 0.92864 0.90111 1.21631 0.95309 1.01144 0.96732 1.21560 0.95788 1.00879 0.97286 1.21552 1.00346 0.99518 0.93985 1.21907 0.95179 1.00603 0.99038 1.20169 0.93010 0.92152 0.83279 1.22322 1.01024 0.96230 1.02481 1.45255 1.56525 1.33365 1.03311 1.16171 0.80104 0.82659 0.81218 1.90834 1.44251 1.29135 1.86464 1.45115 1.56420 1.33174 1.04571 1.21078 0.99118 0.97309 0.80040 1.21464 1.00397 0.98701 0.93079 1.19460 0.96328 0.96190 0.92995 1.21463 1.31574 1.12411 0.91361 0.94405 1.25983 0.96901 0.99587 0.96758 1.70057 1.47000 1.40816 1.01245 0.85699 0.79094 0.80150 0.77986 1.19243 1.20984 1.17178 0.92610 0.91032 0.92473 0.89917 0.91338 0.91729 0.90684 0.91961 0.91881 0.92505 0.93010 0.92237 0.90218 0.93696 0.75713 0.75614 0.92935 0.92958 0.91799 0.91825 0.96272 0.96122 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.67 71.98 0.62 -0.92 16 2 C -0.08 -1.01 2.07 -10.79 -0.02 -1.03 16 3 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.09 4.93 30.60 0.15 -0.94 16 5 C -0.12 -1.30 5.92 30.59 0.18 -1.12 16 6 C -0.12 -1.85 5.65 30.59 0.17 -1.68 16 7 C -0.13 -2.71 4.66 30.58 0.14 -2.57 16 8 C 0.20 3.67 0.50 3.59 0.00 3.67 16 9 C -0.16 -3.35 7.35 71.98 0.53 -2.82 16 10 N -0.73 -14.64 4.81 -438.09 -2.11 -16.75 16 11 C 0.70 19.91 7.98 179.05 1.43 21.34 16 12 O -0.63 -22.87 12.54 -3.98 -0.05 -22.92 16 13 N -0.74 -19.81 5.56 -478.55 -2.66 -22.47 16 14 C 0.15 4.92 5.67 86.38 0.49 5.41 16 15 C -0.10 -3.62 5.27 30.59 0.16 -3.46 16 16 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 17 C -0.53 -30.36 9.66 25.60 0.25 -30.11 16 18 H 0.04 2.35 7.99 -2.92 -0.02 2.33 16 19 C 0.00 0.27 5.47 84.66 0.46 0.73 16 20 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 21 Si 0.95 44.84 27.47 68.60 1.88 46.72 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 25 H 0.05 0.57 6.86 -2.39 -0.02 0.55 16 26 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.06 0.66 6.43 -2.39 -0.02 0.64 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.71 6.43 -2.38 -0.02 0.69 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.04 6.43 -2.38 -0.02 1.02 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.50 6.16 -2.38 -0.01 1.49 16 36 H 0.06 1.14 6.43 -2.39 -0.02 1.12 16 37 H 0.08 1.35 4.81 -2.39 -0.01 1.34 16 38 H 0.04 1.27 6.16 -2.39 -0.01 1.26 16 39 H 0.41 5.85 7.33 -92.71 -0.68 5.17 16 40 H 0.41 8.52 8.49 -92.71 -0.79 7.74 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.06 2.28 8.14 -2.38 -0.02 2.27 16 45 H 0.02 0.87 7.58 -2.39 -0.02 0.85 16 46 H 0.02 0.95 7.19 -2.39 -0.02 0.93 16 47 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -71.07 349.09 1.49 -69.57 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -0.56 Total: 19.21 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 4.69 Total: -13.93 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -4.47 Total: -98.66 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Total: -71.07 1.49 -69.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458298973.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.210 kcal (2) G-P(sol) polarization free energy of solvation -71.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds