Wall clock time and date at job start Tue Mar 31 2020 06:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53005 * 109.47197 * 119.99802 * 2 1 3 5 5 C 1.52997 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 7 7 H 1.08992 * 109.47063 * 299.99823 * 6 5 4 8 8 N 1.46499 * 109.46799 * 179.97438 * 6 5 4 9 9 C 1.34778 * 119.99771 * 85.00174 * 8 6 5 10 10 O 1.21582 * 120.00002 * 359.97438 * 9 8 6 11 11 N 1.34779 * 119.99894 * 180.02562 * 9 8 6 12 12 C 1.46504 * 119.99913 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46936 * 179.97438 * 12 11 9 14 14 C 1.53010 * 109.46762 * 299.99722 * 13 12 11 15 15 C 1.52996 * 109.47423 * 59.99497 * 13 12 11 16 16 C 1.50700 * 109.47060 * 180.02562 * 13 12 11 17 17 H 1.08005 * 119.99780 * 359.97438 * 16 13 12 18 18 C 1.37867 * 120.00139 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99876 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00347 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.47491 * 59.99633 * 20 18 16 22 22 H 1.48498 * 109.47435 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46886 * 300.00079 * 20 18 16 24 24 C 1.53000 * 109.47233 * 60.00194 * 6 5 4 25 25 C 1.52997 * 109.47060 * 299.99657 * 24 6 5 26 26 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 27 27 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 28 28 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46935 * 60.00099 * 4 2 1 30 30 H 1.09001 * 109.46812 * 300.00441 * 4 2 1 31 31 H 1.08993 * 109.47194 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.46695 * 59.99734 * 5 4 2 33 33 H 0.97006 * 120.00568 * 264.99947 * 8 6 5 34 34 H 0.96998 * 119.99934 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.46978 * 299.99688 * 12 11 9 36 36 H 1.09001 * 109.46981 * 59.99906 * 12 11 9 37 37 H 1.08992 * 109.46818 * 60.00403 * 14 13 12 38 38 H 1.08999 * 109.46800 * 180.02562 * 14 13 12 39 39 H 1.08996 * 109.47058 * 299.99849 * 14 13 12 40 40 H 1.09005 * 109.46766 * 59.99838 * 15 13 12 41 41 H 1.08999 * 109.47280 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47408 * 300.00656 * 15 13 12 43 43 H 0.97006 * 119.99911 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.47398 * 59.99826 * 24 6 5 45 45 H 1.09001 * 109.47194 * 180.02562 * 24 6 5 46 46 H 1.08996 * 109.47853 * 180.02562 * 25 24 6 47 47 H 1.09002 * 109.47153 * 300.00319 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0805 -1.4416 0.0004 7 1 3.7176 -2.4693 0.0002 8 7 5.5455 -1.4406 0.0005 9 6 6.2200 -2.3963 0.6700 10 8 5.6126 -3.2589 1.2742 11 7 7.5678 -2.3950 0.6705 12 6 8.3010 -3.4335 1.3987 13 6 9.8051 -3.2035 1.2383 14 6 10.1748 -3.2633 -0.2453 15 6 10.1738 -1.8293 1.8007 16 6 10.5593 -4.2721 1.9868 17 1 10.0198 -5.0384 2.5236 18 6 11.9380 -4.2716 1.9864 19 7 12.5949 -3.3387 1.3323 20 14 12.8729 -5.5957 2.9148 21 1 12.5146 -6.9296 2.3693 22 1 14.3327 -5.3733 2.7580 23 1 12.5146 -5.5373 4.3547 24 6 3.5706 -0.7203 -1.2488 25 6 2.0406 -0.7208 -1.2492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6767 -1.7489 1.2493 30 1 1.6766 -0.2074 2.1392 31 1 3.9333 -1.2341 2.1399 32 1 3.9329 0.3071 1.2498 33 1 6.0302 -0.7521 -0.4813 34 1 8.0523 -1.7066 0.1887 35 1 8.0372 -3.3913 2.4554 36 1 8.0386 -4.4125 0.9976 37 1 9.6293 -2.4907 -0.7870 38 1 11.2464 -3.0999 -0.3595 39 1 9.9122 -4.2423 -0.6460 40 1 9.9103 -1.7867 2.8576 41 1 11.2454 -1.6656 1.6869 42 1 9.6282 -1.0566 1.2590 43 1 13.5650 -3.3385 1.3317 44 1 3.9336 0.3075 -1.2486 45 1 3.9339 -1.2342 -2.1388 46 1 1.6772 -0.2074 -2.1394 47 1 1.6776 -1.7486 -1.2494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458361663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:29 Heat of formation + Delta-G solvation = -68.759789 kcal Electronic energy + Delta-G solvation = -22872.155112 eV Core-core repulsion = 19667.339349 eV Total energy + Delta-G solvation = -3204.815763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.95639 -38.51154 -36.38445 -34.42335 -33.21150 -31.32810 -30.94713 -30.31087 -26.28126 -25.69289 -25.40133 -24.44421 -22.90007 -21.47032 -20.40645 -19.99013 -18.73309 -17.96490 -16.30507 -15.79149 -15.24205 -14.78284 -14.70254 -14.47253 -14.43294 -14.06605 -13.68965 -13.45765 -12.86386 -12.83501 -12.68110 -12.40634 -12.36718 -12.13844 -11.78774 -11.36543 -11.28437 -11.16294 -11.07767 -10.88105 -10.82076 -10.70560 -10.50522 -10.34347 -10.25637 -10.18185 -9.68297 -9.59511 -9.26793 -8.86964 -8.76701 -8.38304 -8.13512 -5.99556 -4.09429 3.15353 3.32023 3.36028 3.40381 3.71022 4.40571 4.48670 4.49579 4.61019 4.85258 4.88706 5.03326 5.21315 5.27110 5.32265 5.33732 5.36537 5.43778 5.58529 5.60256 5.72619 5.84149 5.95101 5.96178 6.03996 6.08301 6.22022 6.28715 6.33152 6.40817 6.54568 6.78932 6.84326 6.86159 6.95449 7.06651 7.15400 7.36410 7.47947 7.59040 7.72379 8.04298 8.15641 8.41606 8.56014 8.90422 9.12480 9.56159 11.01858 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046657 B = 0.002906 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.978514 B = 9631.613035 C = 9830.134229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.130 4.130 6 C 0.166 3.834 7 H 0.085 0.915 8 N -0.751 5.751 9 C 0.697 3.303 10 O -0.600 6.600 11 N -0.734 5.734 12 C 0.151 3.849 13 C 0.056 3.944 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.505 4.505 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.126 4.126 25 C -0.109 4.109 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.392 0.608 34 H 0.393 0.607 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.005 0.995 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.006 0.994 43 H 0.260 0.740 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.212 9.419 -5.772 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.149 4.149 5 C -0.169 4.169 6 C 0.061 3.939 7 H 0.103 0.897 8 N -0.407 5.407 9 C 0.397 3.603 10 O -0.479 6.479 11 N -0.389 5.389 12 C 0.028 3.972 13 C 0.056 3.944 14 C -0.188 4.188 15 C -0.187 4.187 16 C -0.544 4.544 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.526 5.526 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.165 4.165 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.225 0.775 34 H 0.227 0.773 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.024 0.976 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.103 0.897 42 H 0.025 0.975 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.538 8.633 -5.233 21.109 hybrid contribution 1.051 -0.022 0.071 1.054 sum -17.487 8.612 -5.163 20.164 Atomic orbital electron populations 1.21830 0.95352 1.01831 1.01472 1.21185 0.95325 0.99675 0.95102 0.91249 1.21556 0.95201 1.00857 0.97295 1.21954 0.95254 1.00671 0.99060 1.20712 0.78687 1.00467 0.94055 0.89678 1.45237 1.06589 1.31659 1.57167 1.16100 0.82344 0.81877 0.79953 1.90870 1.68181 1.39738 1.49135 1.45516 1.03802 1.33323 1.56221 1.21560 0.92956 0.88325 0.94376 1.18353 0.87721 0.94650 0.93703 1.21821 1.03587 0.97006 0.96347 1.21818 1.03571 0.95713 0.97647 1.20958 0.91072 1.11055 1.31293 0.92478 1.24875 0.97556 0.95791 0.95306 1.69799 1.07492 1.33204 1.42068 0.86631 0.78550 0.82227 0.80428 1.20287 1.21359 1.20284 1.21812 0.96154 1.00870 0.97620 1.21531 0.94495 1.01086 0.97636 0.92769 0.92850 0.92653 0.91726 0.91935 0.91178 0.92114 0.77534 0.77278 0.93056 0.93055 0.97553 0.89665 0.95475 0.95481 0.89676 0.97550 0.92993 0.91547 0.91323 0.91700 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.09 -0.73 2.72 -90.62 -0.25 -0.97 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.11 -1.03 5.20 -26.73 -0.14 -1.17 16 5 C -0.13 -1.48 5.49 -26.73 -0.15 -1.63 16 6 C 0.17 1.97 2.45 -67.93 -0.17 1.81 16 7 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 8 N -0.75 -10.06 5.08 -58.68 -0.30 -10.36 16 9 C 0.70 12.69 8.53 -86.92 -0.74 11.94 16 10 O -0.60 -13.26 16.01 5.29 0.08 -13.18 16 11 N -0.73 -13.50 4.96 -65.22 -0.32 -13.82 16 12 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 13 C 0.06 1.33 0.50 -155.65 -0.08 1.25 16 14 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 15 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 16 C -0.51 -13.40 8.01 -34.44 -0.28 -13.67 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 19 N -0.89 -23.80 9.35 55.43 0.52 -23.28 16 20 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.13 -1.10 5.39 -26.73 -0.14 -1.25 16 25 C -0.11 -0.84 5.21 -26.73 -0.14 -0.98 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.39 4.22 8.62 -40.82 -0.35 3.87 16 34 H 0.39 6.47 6.18 -40.82 -0.25 6.22 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 38 H 0.08 2.14 6.07 -51.93 -0.31 1.83 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 42 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 43 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 359.33 15.07 5.42 5.42 Total: -1.00 -29.10 359.33 -9.52 -38.62 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -8.65 Total: 6.43 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.25 Total: -5.70 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.10 Total: -47.47 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.10 -9.52 -38.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458361663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.143 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds