Wall clock time and date at job start Tue Mar 31 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53005 * 109.47197 * 119.99802 * 2 1 3 5 5 C 1.52997 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 7 7 H 1.08992 * 109.47063 * 299.99823 * 6 5 4 8 8 N 1.46499 * 109.46799 * 179.97438 * 6 5 4 9 9 C 1.34778 * 119.99771 * 85.00174 * 8 6 5 10 10 O 1.21582 * 120.00002 * 359.97438 * 9 8 6 11 11 N 1.34779 * 119.99894 * 180.02562 * 9 8 6 12 12 C 1.46504 * 119.99913 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46936 * 179.97438 * 12 11 9 14 14 C 1.53010 * 109.46762 * 299.99722 * 13 12 11 15 15 C 1.52996 * 109.47423 * 59.99497 * 13 12 11 16 16 C 1.50700 * 109.47060 * 180.02562 * 13 12 11 17 17 H 1.08005 * 119.99780 * 359.97438 * 16 13 12 18 18 C 1.37867 * 120.00139 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99876 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00347 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.47491 * 59.99633 * 20 18 16 22 22 H 1.48498 * 109.47435 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46886 * 300.00079 * 20 18 16 24 24 C 1.53000 * 109.47233 * 60.00194 * 6 5 4 25 25 C 1.52997 * 109.47060 * 299.99657 * 24 6 5 26 26 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 27 27 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 28 28 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46935 * 60.00099 * 4 2 1 30 30 H 1.09001 * 109.46812 * 300.00441 * 4 2 1 31 31 H 1.08993 * 109.47194 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.46695 * 59.99734 * 5 4 2 33 33 H 0.97006 * 120.00568 * 264.99947 * 8 6 5 34 34 H 0.96998 * 119.99934 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.46978 * 299.99688 * 12 11 9 36 36 H 1.09001 * 109.46981 * 59.99906 * 12 11 9 37 37 H 1.08992 * 109.46818 * 60.00403 * 14 13 12 38 38 H 1.08999 * 109.46800 * 180.02562 * 14 13 12 39 39 H 1.08996 * 109.47058 * 299.99849 * 14 13 12 40 40 H 1.09005 * 109.46766 * 59.99838 * 15 13 12 41 41 H 1.08999 * 109.47280 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47408 * 300.00656 * 15 13 12 43 43 H 0.97006 * 119.99911 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.47398 * 59.99826 * 24 6 5 45 45 H 1.09001 * 109.47194 * 180.02562 * 24 6 5 46 46 H 1.08996 * 109.47853 * 180.02562 * 25 24 6 47 47 H 1.09002 * 109.47153 * 300.00319 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0805 -1.4416 0.0004 7 1 3.7176 -2.4693 0.0002 8 7 5.5455 -1.4406 0.0005 9 6 6.2200 -2.3963 0.6700 10 8 5.6126 -3.2589 1.2742 11 7 7.5678 -2.3950 0.6705 12 6 8.3010 -3.4335 1.3987 13 6 9.8051 -3.2035 1.2383 14 6 10.1748 -3.2633 -0.2453 15 6 10.1738 -1.8293 1.8007 16 6 10.5593 -4.2721 1.9868 17 1 10.0198 -5.0384 2.5236 18 6 11.9380 -4.2716 1.9864 19 7 12.5949 -3.3387 1.3323 20 14 12.8729 -5.5957 2.9148 21 1 12.5146 -6.9296 2.3693 22 1 14.3327 -5.3733 2.7580 23 1 12.5146 -5.5373 4.3547 24 6 3.5706 -0.7203 -1.2488 25 6 2.0406 -0.7208 -1.2492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6767 -1.7489 1.2493 30 1 1.6766 -0.2074 2.1392 31 1 3.9333 -1.2341 2.1399 32 1 3.9329 0.3071 1.2498 33 1 6.0302 -0.7521 -0.4813 34 1 8.0523 -1.7066 0.1887 35 1 8.0372 -3.3913 2.4554 36 1 8.0386 -4.4125 0.9976 37 1 9.6293 -2.4907 -0.7870 38 1 11.2464 -3.0999 -0.3595 39 1 9.9122 -4.2423 -0.6460 40 1 9.9103 -1.7867 2.8576 41 1 11.2454 -1.6656 1.6869 42 1 9.6282 -1.0566 1.2590 43 1 13.5650 -3.3385 1.3317 44 1 3.9336 0.3075 -1.2486 45 1 3.9339 -1.2342 -2.1388 46 1 1.6772 -0.2074 -2.1394 47 1 1.6776 -1.7486 -1.2494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458361663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:28 Heat of formation + Delta-G solvation = -85.512145 kcal Electronic energy + Delta-G solvation = -22872.881549 eV Core-core repulsion = 19667.339349 eV Total energy + Delta-G solvation = -3205.542200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24656 -39.56232 -38.10830 -35.55032 -34.96667 -32.88039 -31.70326 -31.57140 -27.56229 -27.55506 -27.13425 -25.93627 -23.68060 -22.47020 -21.68630 -20.79892 -20.56996 -19.36287 -17.75920 -17.47525 -16.62243 -16.48844 -16.05501 -15.43817 -15.24700 -15.11972 -15.10614 -14.73531 -14.62252 -14.10472 -14.00915 -13.56501 -13.21279 -13.14824 -13.08694 -13.06332 -12.68372 -12.61740 -12.46275 -12.24137 -12.13148 -12.03537 -11.86532 -11.62750 -11.47577 -11.31274 -11.22563 -11.10025 -10.98996 -10.70418 -10.39517 -10.21012 -9.62647 -8.01754 -6.17417 1.44587 1.45375 1.52176 1.84168 2.23760 2.46793 3.21726 3.42395 3.73410 3.80363 3.99473 4.17016 4.25979 4.42494 4.46298 4.51204 4.54148 4.59495 4.64743 4.71965 4.83684 4.87716 4.98669 5.02904 5.05864 5.06842 5.11256 5.16682 5.19903 5.20892 5.24470 5.30435 5.39443 5.42254 5.46767 5.60654 5.64346 5.67464 5.67995 5.68732 6.13198 6.16043 6.22792 6.44501 6.86554 7.21217 7.50176 7.68347 8.97094 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046657 B = 0.002906 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.978514 B = 9631.613035 C = 9830.134229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.078 0.922 4 C -0.108 4.108 5 C -0.126 4.126 6 C 0.163 3.837 7 H 0.057 0.943 8 N -0.731 5.731 9 C 0.695 3.305 10 O -0.643 6.643 11 N -0.727 5.727 12 C 0.169 3.831 13 C 0.053 3.947 14 C -0.120 4.120 15 C -0.120 4.120 16 C -0.530 4.530 17 H 0.043 0.957 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.945 3.055 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.277 1.277 24 C -0.117 4.117 25 C -0.108 4.108 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.409 0.591 34 H 0.405 0.595 35 H 0.032 0.968 36 H 0.033 0.967 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.017 0.983 40 H 0.016 0.984 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.261 0.739 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.175 11.187 -7.043 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.097 0.903 4 C -0.146 4.146 5 C -0.165 4.165 6 C 0.058 3.942 7 H 0.075 0.925 8 N -0.387 5.387 9 C 0.395 3.605 10 O -0.525 6.525 11 N -0.382 5.382 12 C 0.044 3.956 13 C 0.052 3.948 14 C -0.178 4.178 15 C -0.178 4.178 16 C -0.569 4.569 17 H 0.062 0.938 18 C -0.171 4.171 19 N -0.538 5.538 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.203 1.203 24 C -0.155 4.155 25 C -0.146 4.146 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.245 0.755 34 H 0.242 0.758 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.511 10.455 -6.543 23.082 hybrid contribution 1.304 -0.562 0.471 1.496 sum -18.207 9.893 -6.072 21.593 Atomic orbital electron populations 1.21812 0.94459 1.01840 1.02218 1.21161 0.96039 0.99730 0.93908 0.90312 1.21543 0.93564 1.00696 0.98843 1.21888 0.96801 1.00649 0.97131 1.20878 0.77442 0.99635 0.96254 0.92494 1.45106 1.07286 1.30569 1.55693 1.16254 0.82073 0.82230 0.79946 1.90846 1.68924 1.41728 1.51014 1.45209 1.03983 1.32898 1.56144 1.21094 0.92395 0.88537 0.93568 1.18345 0.88198 0.94306 0.93921 1.21663 1.02471 0.97554 0.96071 1.21662 1.02458 0.96159 0.97472 1.21248 0.91803 1.11842 1.31979 0.93824 1.25445 0.98181 0.97462 0.96040 1.69899 1.07560 1.33911 1.42403 0.85820 0.77648 0.80105 0.79248 1.20284 1.20707 1.20293 1.21770 0.96857 1.01309 0.95566 1.21549 0.93573 1.01011 0.98475 0.92485 0.91678 0.93052 0.92853 0.91307 0.94746 0.90780 0.75478 0.75833 0.94921 0.94869 0.94415 0.91827 0.96414 0.96449 0.91831 0.94426 0.92992 0.89695 0.90958 0.89702 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.20 71.98 0.66 -0.95 16 2 C -0.09 -1.16 2.72 -10.79 -0.03 -1.19 16 3 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.11 -1.90 5.20 30.60 0.16 -1.74 16 5 C -0.13 -2.77 5.49 30.59 0.17 -2.60 16 6 C 0.16 3.70 2.45 44.99 0.11 3.81 16 7 H 0.06 1.64 7.58 -2.39 -0.02 1.63 16 8 N -0.73 -18.54 5.08 -457.82 -2.33 -20.86 16 9 C 0.70 25.06 8.53 179.05 1.53 26.58 16 10 O -0.64 -29.10 16.01 -3.97 -0.06 -29.16 16 11 N -0.73 -26.10 4.96 -478.52 -2.37 -28.47 16 12 C 0.17 7.47 4.50 86.38 0.39 7.86 16 13 C 0.05 2.49 0.50 -52.92 -0.03 2.47 16 14 C -0.12 -5.38 8.08 71.99 0.58 -4.80 16 15 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 16 C -0.53 -28.51 8.01 25.60 0.21 -28.30 16 17 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 18 C 0.03 1.52 5.15 84.65 0.44 1.95 16 19 N -0.90 -48.22 9.35 21.44 0.20 -48.01 16 20 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 C -0.12 -1.73 5.39 30.59 0.16 -1.56 16 25 C -0.11 -1.38 5.21 30.59 0.16 -1.22 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.41 7.66 8.62 -92.70 -0.80 6.86 16 34 H 0.40 12.41 6.18 -92.71 -0.57 11.84 16 35 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 38 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.02 0.76 8.14 -2.38 -0.02 0.75 16 41 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 42 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 43 H 0.26 13.47 8.31 -92.70 -0.77 12.70 16 44 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -63.72 359.33 2.12 -61.60 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.43 Total: 24.36 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 5.09 Total: -4.48 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -4.50 Total: -97.35 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.06 Total: -29.16 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -63.72 2.12 -61.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458361663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.911 kcal (2) G-P(sol) polarization free energy of solvation -63.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds