Wall clock time and date at job start Tue Mar 31 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.01882 * 2 1 4 4 C 1.54275 * 110.07365 * 238.58855 * 2 1 3 5 5 C 1.54888 * 104.19421 * 264.30316 * 4 2 1 6 6 C 1.54892 * 102.74664 * 322.05785 * 5 4 2 7 7 C 1.53871 * 110.03628 * 121.39738 * 2 1 3 8 8 H 1.09000 * 110.02672 * 0.04559 * 7 2 1 9 9 C 1.53000 * 110.03269 * 238.66947 * 7 2 1 10 10 N 1.46494 * 109.47462 * 175.68867 * 9 7 2 11 11 C 1.34774 * 120.00649 * 179.97438 * 10 9 7 12 12 O 1.21595 * 119.99411 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00674 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00309 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47067 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.46723 * 299.99574 * 15 14 13 17 17 C 1.53002 * 109.47158 * 59.99698 * 15 14 13 18 18 C 1.50702 * 109.46883 * 179.97438 * 15 14 13 19 19 H 1.08006 * 119.99970 * 357.00348 * 18 15 14 20 20 C 1.37870 * 119.99935 * 177.00611 * 18 15 14 21 21 N 1.31520 * 119.99970 * 5.54107 * 20 18 15 22 22 Si 1.86794 * 120.00312 * 185.53962 * 20 18 15 23 23 H 1.48508 * 109.47185 * 84.99992 * 22 20 18 24 24 H 1.48500 * 109.47511 * 204.99893 * 22 20 18 25 25 H 1.48506 * 109.47121 * 325.00366 * 22 20 18 26 26 H 1.08998 * 109.47121 * 298.60453 * 1 2 3 27 27 H 1.09005 * 109.47219 * 58.60494 * 1 2 3 28 28 H 1.08996 * 109.46943 * 178.60272 * 1 2 3 29 29 H 1.09004 * 110.48468 * 22.97911 * 4 2 1 30 30 H 1.08994 * 110.48492 * 145.49149 * 4 2 1 31 31 H 1.09002 * 110.75613 * 80.36843 * 5 4 2 32 32 H 1.08995 * 110.75564 * 203.55626 * 5 4 2 33 33 H 1.09009 * 110.48629 * 279.26303 * 6 5 4 34 34 H 1.08999 * 110.48632 * 156.62735 * 6 5 4 35 35 H 1.09003 * 109.47162 * 295.68737 * 9 7 2 36 36 H 1.09000 * 109.47388 * 55.68759 * 9 7 2 37 37 H 0.97003 * 119.99822 * 359.97438 * 10 9 7 38 38 H 0.97003 * 119.99797 * 359.97438 * 13 11 10 39 39 H 1.09001 * 109.46786 * 299.99834 * 14 13 11 40 40 H 1.08999 * 109.47415 * 59.99564 * 14 13 11 41 41 H 1.09000 * 109.47437 * 53.93780 * 16 15 14 42 42 H 1.09009 * 109.46723 * 173.93338 * 16 15 14 43 43 H 1.08999 * 109.47482 * 293.93329 * 16 15 14 44 44 H 1.09001 * 109.47137 * 59.99866 * 17 15 14 45 45 H 1.08996 * 109.46872 * 179.97438 * 17 15 14 46 46 H 1.08997 * 109.46865 * 300.00405 * 17 15 14 47 47 H 0.96999 * 120.00043 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0595 -0.7552 -1.2367 5 6 2.3299 -2.1897 -0.7187 6 6 2.8885 -1.9396 0.7042 7 6 2.0572 -0.7531 1.2339 8 1 1.2230 -1.1193 1.8323 9 6 2.9389 0.1718 2.0753 10 7 3.3499 -0.5237 3.2973 11 6 4.1371 0.1004 4.1958 12 8 4.5065 1.2408 3.9918 13 7 4.5148 -0.5393 5.3203 14 6 5.3699 0.1394 6.2971 15 6 5.6477 -0.8007 7.4719 16 6 4.3258 -1.1915 8.1359 17 6 6.3541 -2.0586 6.9626 18 6 6.5279 -0.1027 8.4765 19 1 6.8961 0.8921 8.2729 20 6 6.8634 -0.7340 9.6554 21 7 6.5070 -1.9839 9.8565 22 14 7.8239 0.1858 10.9670 23 1 6.8844 0.9619 11.8158 24 1 8.5656 -0.7858 11.8103 25 1 8.7854 1.1129 10.3178 26 1 -0.3633 0.4920 0.9022 27 1 -0.3634 0.5354 -0.8772 28 1 -0.3633 -1.0273 -0.0251 29 1 1.3075 -0.7699 -2.0256 30 1 2.9807 -0.2978 -1.5974 31 1 1.4052 -2.7653 -0.6750 32 1 3.0675 -2.6933 -1.3434 33 1 3.9449 -1.6749 0.6582 34 1 2.7416 -2.8187 1.3316 35 1 3.8227 0.4519 1.5020 36 1 2.3777 1.0683 2.3388 37 1 3.0555 -1.4336 3.4599 38 1 4.2197 -1.4489 5.4832 39 1 6.3115 0.4182 5.8239 40 1 4.8665 1.0353 6.6603 41 1 3.6485 -1.5986 7.3851 42 1 4.5127 -1.9435 8.9026 43 1 3.8745 -0.3109 8.5930 44 1 7.2958 -1.7802 6.4895 45 1 6.5524 -2.7281 7.7996 46 1 5.7178 -2.5635 6.2357 47 1 6.7427 -2.4280 10.6860 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458717015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:27 Heat of formation + Delta-G solvation = -65.257269 kcal Electronic energy + Delta-G solvation = -22678.876935 eV Core-core repulsion = 19474.213053 eV Total energy + Delta-G solvation = -3204.663883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.81800 -38.81201 -36.42463 -34.30510 -33.18247 -31.29555 -30.93796 -29.58475 -26.33739 -25.69711 -25.50786 -24.82387 -23.33256 -20.92459 -20.49356 -19.59874 -18.72753 -17.95182 -16.25564 -15.80056 -15.61727 -15.21490 -15.03358 -14.66794 -14.14801 -13.74571 -13.58174 -13.53440 -13.16919 -12.83168 -12.81561 -12.59008 -12.18836 -12.14132 -11.39069 -11.31930 -11.16747 -11.08820 -10.94945 -10.89425 -10.82892 -10.78290 -10.71880 -10.66618 -10.34368 -10.19244 -9.71786 -9.58865 -9.27376 -8.89609 -8.76458 -8.37843 -8.12567 -6.00223 -4.08726 3.16959 3.30852 3.37131 3.41455 3.71663 4.28624 4.31393 4.40795 4.42485 4.83503 4.96974 5.05734 5.09415 5.16992 5.26978 5.29119 5.33938 5.37161 5.55989 5.60563 5.68558 5.78628 5.83693 5.85718 5.91711 6.01989 6.10223 6.21540 6.26188 6.40862 6.54528 6.73412 6.84379 6.85676 6.94634 7.06566 7.15020 7.35862 7.46935 7.59071 7.73122 8.02771 8.15053 8.41181 8.55218 8.91027 9.11654 9.56539 11.01889 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041083 B = 0.002846 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.382340 B = 9836.763666 C =10040.665296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.121 4.121 7 C -0.101 4.101 8 H 0.079 0.921 9 C 0.149 3.851 10 N -0.753 5.753 11 C 0.696 3.304 12 O -0.602 6.602 13 N -0.734 5.734 14 C 0.151 3.849 15 C 0.056 3.944 16 C -0.128 4.128 17 C -0.129 4.129 18 C -0.506 4.506 19 H 0.058 0.942 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.288 1.288 25 H -0.275 1.275 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.392 0.608 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.006 0.994 42 H 0.080 0.920 43 H 0.029 0.971 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.005 0.995 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.133 -2.524 -18.690 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.159 4.159 7 C -0.120 4.120 8 H 0.097 0.903 9 C 0.024 3.976 10 N -0.410 5.410 11 C 0.396 3.604 12 O -0.481 6.481 13 N -0.388 5.388 14 C 0.028 3.972 15 C 0.055 3.945 16 C -0.186 4.186 17 C -0.187 4.187 18 C -0.545 4.545 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.214 1.214 25 H -0.200 1.200 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.225 0.775 38 H 0.227 0.773 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.025 0.975 42 H 0.099 0.901 43 H 0.048 0.952 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.024 0.976 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.745 -1.583 -18.706 21.630 hybrid contribution 0.226 -0.376 0.940 1.037 sum -10.520 -1.959 -17.765 20.739 Atomic orbital electron populations 1.21876 0.94812 1.01710 1.01700 1.21702 0.95771 0.99644 0.93819 0.90636 1.22434 1.00848 0.95541 0.96999 1.22476 1.00683 0.96732 0.96277 1.22470 0.99840 0.97497 0.96094 1.22123 0.98015 0.95646 0.96173 0.90271 1.21231 0.97710 0.94464 0.84193 1.45124 1.55645 1.18050 1.22180 1.16093 0.79213 0.84736 0.80343 1.90879 1.61216 1.17486 1.78493 1.45507 1.54676 1.18091 1.20569 1.21554 0.91754 0.95734 0.88201 1.18359 0.93658 0.91993 0.90447 1.21794 0.95837 1.01082 0.99850 1.21836 0.97550 0.99737 0.99566 1.20983 1.30158 1.01590 1.01767 0.92411 1.24874 0.95735 0.94730 0.98121 1.69831 1.46971 1.10244 1.25412 0.86598 0.80016 0.79605 0.81708 1.20638 1.21363 1.19961 0.92553 0.92734 0.92657 0.91679 0.91564 0.91657 0.91696 0.91099 0.91619 0.91916 0.92074 0.77453 0.77261 0.93036 0.93013 0.97500 0.90091 0.95215 0.95485 0.89663 0.97622 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.83 37.16 0.33 -0.66 16 2 C -0.09 -0.69 3.15 -89.50 -0.28 -0.98 16 3 H 0.08 0.62 7.67 -51.93 -0.40 0.22 16 4 C -0.12 -0.85 6.37 -25.07 -0.16 -1.01 16 5 C -0.12 -0.88 6.91 -24.74 -0.17 -1.05 16 6 C -0.12 -0.98 6.05 -25.08 -0.15 -1.14 16 7 C -0.10 -0.86 2.62 -89.51 -0.23 -1.09 16 8 H 0.08 0.66 7.67 -51.93 -0.40 0.26 16 9 C 0.15 1.75 4.73 -4.05 -0.02 1.73 16 10 N -0.75 -10.09 5.40 -65.23 -0.35 -10.44 16 11 C 0.70 12.79 8.57 -86.92 -0.74 12.04 16 12 O -0.60 -13.52 16.34 5.28 0.09 -13.44 16 13 N -0.73 -13.53 4.91 -65.22 -0.32 -13.85 16 14 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 15 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 16 C -0.13 -2.91 8.03 37.16 0.30 -2.61 16 17 C -0.13 -2.94 8.11 37.16 0.30 -2.64 16 18 C -0.51 -13.44 8.01 -34.44 -0.28 -13.72 16 19 H 0.06 1.55 7.75 -52.48 -0.41 1.15 16 20 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 21 N -0.89 -23.80 9.45 55.43 0.52 -23.27 16 22 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.41 7.84 -51.93 -0.41 0.00 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.66 7.78 -51.92 -0.40 0.25 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.81 8.02 -51.93 -0.42 0.39 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.39 4.24 8.35 -40.82 -0.34 3.90 16 38 H 0.39 6.46 6.17 -40.82 -0.25 6.21 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 42 H 0.08 2.01 6.25 -51.92 -0.32 1.69 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.14 6.10 -51.93 -0.32 1.82 16 46 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 47 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -29.42 361.67 -9.51 -38.93 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -8.58 Total: 5.63 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.30 Total: -4.91 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.15 Total: -47.56 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.42 -9.51 -38.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458717015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.324 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds