Wall clock time and date at job start Tue Mar 31 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.01882 * 2 1 4 4 C 1.54275 * 110.07365 * 238.58855 * 2 1 3 5 5 C 1.54888 * 104.19421 * 264.30316 * 4 2 1 6 6 C 1.54892 * 102.74664 * 322.05785 * 5 4 2 7 7 C 1.53871 * 110.03628 * 121.39738 * 2 1 3 8 8 H 1.09000 * 110.02672 * 0.04559 * 7 2 1 9 9 C 1.53000 * 110.03269 * 238.66947 * 7 2 1 10 10 N 1.46494 * 109.47462 * 175.68867 * 9 7 2 11 11 C 1.34774 * 120.00649 * 179.97438 * 10 9 7 12 12 O 1.21595 * 119.99411 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00674 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00309 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47067 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.46723 * 299.99574 * 15 14 13 17 17 C 1.53002 * 109.47158 * 59.99698 * 15 14 13 18 18 C 1.50702 * 109.46883 * 179.97438 * 15 14 13 19 19 H 1.08006 * 119.99970 * 357.00348 * 18 15 14 20 20 C 1.37870 * 119.99935 * 177.00611 * 18 15 14 21 21 N 1.31520 * 119.99970 * 5.54107 * 20 18 15 22 22 Si 1.86794 * 120.00312 * 185.53962 * 20 18 15 23 23 H 1.48508 * 109.47185 * 84.99992 * 22 20 18 24 24 H 1.48500 * 109.47511 * 204.99893 * 22 20 18 25 25 H 1.48506 * 109.47121 * 325.00366 * 22 20 18 26 26 H 1.08998 * 109.47121 * 298.60453 * 1 2 3 27 27 H 1.09005 * 109.47219 * 58.60494 * 1 2 3 28 28 H 1.08996 * 109.46943 * 178.60272 * 1 2 3 29 29 H 1.09004 * 110.48468 * 22.97911 * 4 2 1 30 30 H 1.08994 * 110.48492 * 145.49149 * 4 2 1 31 31 H 1.09002 * 110.75613 * 80.36843 * 5 4 2 32 32 H 1.08995 * 110.75564 * 203.55626 * 5 4 2 33 33 H 1.09009 * 110.48629 * 279.26303 * 6 5 4 34 34 H 1.08999 * 110.48632 * 156.62735 * 6 5 4 35 35 H 1.09003 * 109.47162 * 295.68737 * 9 7 2 36 36 H 1.09000 * 109.47388 * 55.68759 * 9 7 2 37 37 H 0.97003 * 119.99822 * 359.97438 * 10 9 7 38 38 H 0.97003 * 119.99797 * 359.97438 * 13 11 10 39 39 H 1.09001 * 109.46786 * 299.99834 * 14 13 11 40 40 H 1.08999 * 109.47415 * 59.99564 * 14 13 11 41 41 H 1.09000 * 109.47437 * 53.93780 * 16 15 14 42 42 H 1.09009 * 109.46723 * 173.93338 * 16 15 14 43 43 H 1.08999 * 109.47482 * 293.93329 * 16 15 14 44 44 H 1.09001 * 109.47137 * 59.99866 * 17 15 14 45 45 H 1.08996 * 109.46872 * 179.97438 * 17 15 14 46 46 H 1.08997 * 109.46865 * 300.00405 * 17 15 14 47 47 H 0.96999 * 120.00043 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0595 -0.7552 -1.2367 5 6 2.3299 -2.1897 -0.7187 6 6 2.8885 -1.9396 0.7042 7 6 2.0572 -0.7531 1.2339 8 1 1.2230 -1.1193 1.8323 9 6 2.9389 0.1718 2.0753 10 7 3.3499 -0.5237 3.2973 11 6 4.1371 0.1004 4.1958 12 8 4.5065 1.2408 3.9918 13 7 4.5148 -0.5393 5.3203 14 6 5.3699 0.1394 6.2971 15 6 5.6477 -0.8007 7.4719 16 6 4.3258 -1.1915 8.1359 17 6 6.3541 -2.0586 6.9626 18 6 6.5279 -0.1027 8.4765 19 1 6.8961 0.8921 8.2729 20 6 6.8634 -0.7340 9.6554 21 7 6.5070 -1.9839 9.8565 22 14 7.8239 0.1858 10.9670 23 1 6.8844 0.9619 11.8158 24 1 8.5656 -0.7858 11.8103 25 1 8.7854 1.1129 10.3178 26 1 -0.3633 0.4920 0.9022 27 1 -0.3634 0.5354 -0.8772 28 1 -0.3633 -1.0273 -0.0251 29 1 1.3075 -0.7699 -2.0256 30 1 2.9807 -0.2978 -1.5974 31 1 1.4052 -2.7653 -0.6750 32 1 3.0675 -2.6933 -1.3434 33 1 3.9449 -1.6749 0.6582 34 1 2.7416 -2.8187 1.3316 35 1 3.8227 0.4519 1.5020 36 1 2.3777 1.0683 2.3388 37 1 3.0555 -1.4336 3.4599 38 1 4.2197 -1.4489 5.4832 39 1 6.3115 0.4182 5.8239 40 1 4.8665 1.0353 6.6603 41 1 3.6485 -1.5986 7.3851 42 1 4.5127 -1.9435 8.9026 43 1 3.8745 -0.3109 8.5930 44 1 7.2958 -1.7802 6.4895 45 1 6.5524 -2.7281 7.7996 46 1 5.7178 -2.5635 6.2357 47 1 6.7427 -2.4280 10.6860 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458717015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:26 Heat of formation + Delta-G solvation = -82.099267 kcal Electronic energy + Delta-G solvation = -22679.607259 eV Core-core repulsion = 19474.213053 eV Total energy + Delta-G solvation = -3205.394206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.12333 -39.71861 -38.17806 -35.53999 -34.95436 -32.73401 -31.86697 -30.58145 -27.55382 -27.48585 -27.09092 -26.34558 -24.30946 -22.11468 -21.33860 -20.57106 -20.44814 -19.27340 -17.75934 -17.37350 -16.72216 -16.59047 -16.22097 -16.01808 -15.34350 -15.13952 -14.96964 -14.64490 -14.42124 -14.15270 -13.99291 -13.73775 -13.31705 -13.21658 -13.06485 -12.95203 -12.67753 -12.59471 -12.23062 -12.13947 -11.92301 -11.81196 -11.64463 -11.49300 -11.46769 -11.43560 -11.34270 -11.29343 -11.10424 -10.70269 -10.39663 -10.27275 -9.63076 -8.02408 -6.16653 1.43448 1.45812 1.53479 1.84290 2.22436 2.47091 3.21584 3.41819 3.63652 3.72030 3.77334 4.31444 4.37456 4.43796 4.49762 4.52593 4.54619 4.59237 4.70597 4.72716 4.74836 4.86377 4.95414 5.01564 5.03602 5.06947 5.11413 5.12349 5.20812 5.21021 5.27162 5.33743 5.38897 5.39503 5.50073 5.56017 5.61333 5.64919 5.68192 5.69226 6.10444 6.15143 6.22746 6.44330 6.87307 7.19203 7.50632 7.66132 8.97249 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041083 B = 0.002846 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.382340 B = 9836.763666 C =10040.665296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.122 4.122 7 C -0.090 4.090 8 H 0.089 0.911 9 C 0.149 3.851 10 N -0.731 5.731 11 C 0.694 3.306 12 O -0.645 6.645 13 N -0.726 5.726 14 C 0.168 3.832 15 C 0.053 3.947 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.531 4.531 19 H 0.044 0.956 20 C 0.030 3.970 21 N -0.899 5.899 22 Si 0.944 3.056 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.277 1.277 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.409 0.591 38 H 0.405 0.595 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.038 0.962 42 H 0.060 0.940 43 H 0.017 0.983 44 H 0.016 0.984 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 -3.668 -19.744 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.160 4.160 7 C -0.109 4.109 8 H 0.107 0.893 9 C 0.025 3.975 10 N -0.388 5.388 11 C 0.394 3.606 12 O -0.528 6.528 13 N -0.381 5.381 14 C 0.043 3.957 15 C 0.052 3.948 16 C -0.175 4.175 17 C -0.177 4.177 18 C -0.570 4.570 19 H 0.062 0.938 20 C -0.170 4.170 21 N -0.537 5.537 22 Si 0.771 3.229 23 H -0.204 1.204 24 H -0.208 1.208 25 H -0.202 1.202 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.245 0.755 38 H 0.242 0.758 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.055 0.945 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.044 -2.780 -19.785 23.329 hybrid contribution 0.605 -0.009 1.215 1.358 sum -11.439 -2.789 -18.569 21.987 Atomic orbital electron populations 1.21854 0.93880 1.02236 1.01856 1.21713 0.96513 0.99146 0.93677 0.91538 1.22435 1.00940 0.95440 0.96921 1.22469 1.01160 0.96754 0.95426 1.22471 0.98928 0.97445 0.97142 1.22073 0.97596 0.95194 0.96052 0.89268 1.21346 0.97623 0.94985 0.83563 1.44964 1.53821 1.18590 1.21418 1.16247 0.79453 0.84251 0.80659 1.90854 1.62926 1.19598 1.79387 1.45197 1.54334 1.18435 1.20183 1.21099 0.91319 0.95019 0.88241 1.18349 0.93699 0.92306 0.90442 1.21638 0.95910 0.99978 0.99997 1.21674 0.97686 0.98997 0.99320 1.21268 1.31134 1.01431 1.03127 0.93799 1.25439 0.96582 0.95444 0.99576 1.69927 1.47301 1.10811 1.25678 0.85788 0.78881 0.78605 0.79610 1.20410 1.20803 1.20170 0.92990 0.92039 0.91932 0.90589 0.92073 0.90689 0.91312 0.92484 0.90691 0.93203 0.93148 0.75465 0.75785 0.94838 0.94751 0.94305 0.92103 0.96387 0.96447 0.91863 0.94464 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.83 71.98 0.64 -0.99 16 2 C -0.09 -1.25 3.15 -10.07 -0.03 -1.28 16 3 H 0.07 1.04 7.67 -2.39 -0.02 1.02 16 4 C -0.12 -1.45 6.37 31.67 0.20 -1.25 16 5 C -0.12 -1.40 6.91 31.89 0.22 -1.18 16 6 C -0.12 -1.72 6.05 31.67 0.19 -1.53 16 7 C -0.09 -1.37 2.62 -10.07 -0.03 -1.40 16 8 H 0.09 1.22 7.67 -2.39 -0.02 1.21 16 9 C 0.15 3.37 4.73 86.38 0.41 3.78 16 10 N -0.73 -18.43 5.40 -478.54 -2.58 -21.01 16 11 C 0.69 24.93 8.57 179.06 1.53 26.46 16 12 O -0.65 -29.22 16.34 -4.02 -0.07 -29.28 16 13 N -0.73 -25.87 4.91 -478.53 -2.35 -28.22 16 14 C 0.17 7.39 4.50 86.38 0.39 7.78 16 15 C 0.05 2.47 0.50 -52.93 -0.03 2.44 16 16 C -0.12 -5.24 8.03 71.98 0.58 -4.66 16 17 C -0.12 -5.32 8.11 71.98 0.58 -4.74 16 18 C -0.53 -28.49 8.01 25.60 0.20 -28.29 16 19 H 0.04 2.41 7.75 -2.91 -0.02 2.39 16 20 C 0.03 1.57 5.13 84.65 0.43 2.00 16 21 N -0.90 -48.14 9.45 21.45 0.20 -47.93 16 22 Si 0.94 42.97 29.54 68.60 2.03 44.99 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.77 7.84 -2.39 -0.02 0.75 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.97 7.78 -2.38 -0.02 0.96 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 1.28 8.02 -2.39 -0.02 1.26 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.41 7.72 8.35 -92.71 -0.77 6.95 16 38 H 0.41 12.30 6.17 -92.71 -0.57 11.73 16 39 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.04 1.43 6.71 -2.39 -0.02 1.42 16 42 H 0.06 2.98 6.25 -2.38 -0.01 2.96 16 43 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 3.14 6.10 -2.39 -0.01 3.12 16 46 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 47 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -63.21 361.67 2.12 -61.09 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -0.41 Total: 23.22 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.30 Total: -2.85 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -4.73 Total: -97.17 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.07 Total: -29.28 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -63.21 2.12 -61.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458717015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.012 kcal (2) G-P(sol) polarization free energy of solvation -63.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds