Wall clock time and date at job start Tue Mar 31 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 110.43334 * 2 1 4 4 C 1.54261 * 110.48660 * 122.54119 * 2 1 3 5 5 C 1.53876 * 106.59990 * 142.28682 * 4 2 1 6 6 C 1.54267 * 106.59870 * 0.02562 * 5 4 2 7 7 C 1.54888 * 110.48770 * 237.31817 * 2 1 3 8 8 H 1.09001 * 110.75591 * 321.88005 * 7 2 1 9 9 C 1.52997 * 110.75789 * 85.06188 * 7 2 1 10 10 N 1.46505 * 109.47165 * 184.99829 * 9 7 2 11 11 C 1.34778 * 120.00015 * 180.02562 * 10 9 7 12 12 O 1.21598 * 119.99910 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00083 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00102 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47247 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47166 * 299.99798 * 15 14 13 17 17 C 1.52996 * 109.47408 * 59.99717 * 15 14 13 18 18 C 1.50702 * 109.47040 * 180.02562 * 15 14 13 19 19 H 1.07996 * 120.00153 * 359.97438 * 18 15 14 20 20 C 1.37881 * 119.99696 * 180.02562 * 18 15 14 21 21 N 1.31519 * 119.99825 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 119.99889 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.47275 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47426 * 119.99773 * 22 20 18 25 25 H 1.48503 * 109.47130 * 239.99703 * 22 20 18 26 26 H 1.08998 * 109.47490 * 298.91600 * 1 2 3 27 27 H 1.09004 * 109.47232 * 58.91326 * 1 2 3 28 28 H 1.09003 * 109.47416 * 178.91043 * 1 2 3 29 29 H 1.08998 * 110.03492 * 23.00556 * 4 2 1 30 30 H 1.08994 * 110.03470 * 261.57133 * 4 2 1 31 31 H 1.08995 * 110.03160 * 119.28453 * 5 4 2 32 32 H 1.08998 * 110.03319 * 240.71542 * 5 4 2 33 33 H 1.09004 * 110.48597 * 95.06674 * 6 5 4 34 34 H 1.08994 * 110.48679 * 217.71200 * 6 5 4 35 35 H 1.09000 * 109.47412 * 305.00230 * 9 7 2 36 36 H 1.09005 * 109.46985 * 65.00429 * 9 7 2 37 37 H 0.97000 * 120.00161 * 0.02562 * 10 9 7 38 38 H 0.96993 * 120.00000 * 359.97438 * 13 11 10 39 39 H 1.09001 * 109.46634 * 300.00343 * 14 13 11 40 40 H 1.08998 * 109.47207 * 59.99656 * 14 13 11 41 41 H 1.09010 * 109.46632 * 59.99556 * 16 15 14 42 42 H 1.08990 * 109.47364 * 179.97438 * 16 15 14 43 43 H 1.09007 * 109.47089 * 300.00769 * 16 15 14 44 44 H 1.08993 * 109.46875 * 59.99904 * 17 15 14 45 45 H 1.08997 * 109.47174 * 180.02562 * 17 15 14 46 46 H 1.08998 * 109.46958 * 300.00298 * 17 15 14 47 47 H 0.97010 * 119.99309 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0698 -0.7773 1.2182 5 6 3.3165 -1.5396 0.7359 6 6 3.4910 -1.1984 -0.7584 7 6 2.0721 -0.7834 -1.2212 8 1 1.4561 -1.6600 -1.4222 9 6 2.1465 0.1187 -2.4547 10 7 2.5476 -0.6766 -3.6179 11 6 2.6798 -0.0883 -4.8232 12 8 2.4667 1.1026 -4.9452 13 7 3.0483 -0.8200 -5.8934 14 6 3.1926 -0.1804 -7.2035 15 6 3.6156 -1.2257 -8.2376 16 6 4.9524 -1.8429 -7.8214 17 6 2.5514 -2.3218 -8.3196 18 6 3.7647 -0.5676 -9.5851 19 1 3.5761 0.4902 -9.6933 20 6 4.1407 -1.3164 -10.6801 21 7 4.3699 -2.6047 -10.5484 22 14 4.3248 -0.5009 -12.3505 23 1 4.0116 0.9459 -12.2323 24 1 5.7195 -0.6682 -12.8321 25 1 3.3889 -1.1322 -13.3154 26 1 -0.3634 0.4969 0.8995 27 1 -0.3634 0.5306 -0.8801 28 1 -0.3634 -1.0275 -0.0195 29 1 1.3176 -1.4803 1.5759 30 1 2.3411 -0.0833 2.0136 31 1 4.1927 -1.2155 1.2973 32 1 3.1691 -2.6125 0.8596 33 1 4.1902 -0.3714 -0.8817 34 1 3.8318 -2.0732 -1.3121 35 1 1.1688 0.5641 -2.6387 36 1 2.8789 0.9077 -2.2840 37 1 2.7180 -1.6265 -3.5205 38 1 3.2187 -1.7698 -5.7960 39 1 2.2402 0.2590 -7.5001 40 1 3.9505 0.6008 -7.1450 41 1 4.8450 -2.3187 -6.8465 42 1 5.2535 -2.5879 -8.5577 43 1 5.7107 -1.0620 -7.7629 44 1 1.5992 -1.8821 -8.6160 45 1 2.8530 -3.0667 -9.0559 46 1 2.4440 -2.7976 -7.3448 47 1 4.6348 -3.1314 -11.3188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458717017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:29 Heat of formation + Delta-G solvation = -66.095282 kcal Electronic energy + Delta-G solvation = -22658.536716 eV Core-core repulsion = 19453.836495 eV Total energy + Delta-G solvation = -3204.700222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.76592 -38.75081 -36.42388 -34.29384 -33.18657 -31.56747 -30.93195 -29.60135 -26.05350 -25.69219 -25.45630 -24.80735 -23.49501 -20.77813 -20.44290 -19.85717 -18.73004 -17.99290 -16.20501 -15.79944 -15.42429 -15.19328 -14.95849 -14.64215 -14.15150 -14.05096 -13.67956 -13.53193 -13.23349 -12.90725 -12.81521 -12.45684 -12.14566 -12.02130 -11.46344 -11.35783 -11.17792 -11.11590 -10.99390 -10.86685 -10.82314 -10.77383 -10.65299 -10.63307 -10.35188 -10.18317 -9.71296 -9.59723 -9.27075 -8.88958 -8.75095 -8.38942 -8.12591 -5.99928 -4.09517 3.16951 3.28862 3.37441 3.42894 3.71905 4.25610 4.31605 4.40490 4.42867 4.82828 4.98754 5.02185 5.11171 5.22138 5.26728 5.26980 5.30926 5.34272 5.53494 5.61616 5.68298 5.81014 5.84788 5.86536 5.91679 5.99828 6.12428 6.21444 6.26419 6.40939 6.54388 6.73741 6.84352 6.86141 6.95194 7.06733 7.15322 7.35942 7.47295 7.59175 7.72651 8.04264 8.15790 8.41557 8.55440 8.90872 9.11920 9.56162 11.01547 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039738 B = 0.002861 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.454585 B = 9783.059139 C =10061.594889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.120 4.120 7 C -0.101 4.101 8 H 0.083 0.917 9 C 0.149 3.851 10 N -0.753 5.753 11 C 0.696 3.304 12 O -0.601 6.601 13 N -0.734 5.734 14 C 0.151 3.849 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.130 4.130 18 C -0.504 4.504 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.392 0.608 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.005 0.995 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.005 0.995 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -1.084 21.396 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.157 4.157 5 C -0.163 4.163 6 C -0.158 4.158 7 C -0.120 4.120 8 H 0.101 0.899 9 C 0.025 3.975 10 N -0.410 5.410 11 C 0.396 3.604 12 O -0.481 6.481 13 N -0.388 5.388 14 C 0.028 3.972 15 C 0.055 3.945 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.542 4.542 19 H 0.076 0.924 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.225 0.775 38 H 0.227 0.773 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.024 0.976 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.022 -0.111 21.138 21.517 hybrid contribution 0.288 -0.525 -0.818 1.014 sum -3.734 -0.636 20.320 20.670 Atomic orbital electron populations 1.21837 0.94811 1.01872 1.01846 1.21922 0.95622 0.99434 0.93757 0.90386 1.22204 0.97280 0.98818 0.97444 1.22122 0.97908 1.00098 0.96145 1.22448 0.96474 1.01479 0.95396 1.22466 0.97071 0.98584 0.93874 0.89911 1.21101 1.00279 0.93218 0.82916 1.45118 1.76083 1.12119 1.07656 1.16094 0.78484 0.85417 0.80388 1.90880 1.58472 1.13882 1.84838 1.45499 1.72604 1.12049 1.08680 1.21563 0.99967 0.96320 0.79388 1.18364 0.92368 0.91457 0.92314 1.21818 0.98353 1.00819 0.97732 1.21815 0.97892 1.00617 0.98413 1.21041 1.46005 0.95118 0.92070 0.92356 1.24885 0.95020 0.94839 0.98842 1.69825 1.47144 1.05594 1.29977 0.86518 0.77599 0.79755 0.84026 1.19742 1.21088 1.21094 0.92705 0.92320 0.92624 0.91768 0.91936 0.91955 0.91943 0.91236 0.91557 0.91957 0.91937 0.77462 0.77272 0.93036 0.93034 0.97567 0.89678 0.95470 0.95469 0.89671 0.97557 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.11 37.15 0.34 -0.73 16 2 C -0.09 -0.68 2.90 -88.97 -0.26 -0.93 16 3 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 4 C -0.12 -0.82 6.37 -25.61 -0.16 -0.98 16 5 C -0.13 -0.88 6.80 -25.61 -0.17 -1.05 16 6 C -0.12 -0.98 6.20 -25.06 -0.16 -1.13 16 7 C -0.10 -0.86 2.34 -88.62 -0.21 -1.07 16 8 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 9 C 0.15 1.75 5.11 -4.04 -0.02 1.73 16 10 N -0.75 -10.06 5.48 -65.22 -0.36 -10.42 16 11 C 0.70 12.77 8.57 -86.92 -0.74 12.03 16 12 O -0.60 -13.50 16.34 5.28 0.09 -13.42 16 13 N -0.73 -13.52 4.96 -65.22 -0.32 -13.85 16 14 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 15 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 16 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 17 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 18 C -0.50 -13.35 8.01 -34.44 -0.28 -13.63 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 21 N -0.89 -23.77 9.35 55.43 0.52 -23.25 16 22 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.47 7.89 -51.93 -0.41 0.06 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.41 7.84 -51.93 -0.41 0.01 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.62 7.94 -51.93 -0.41 0.21 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.79 7.89 -51.93 -0.41 0.38 16 36 H 0.06 0.80 7.99 -51.93 -0.41 0.39 16 37 H 0.39 4.22 8.49 -40.82 -0.35 3.88 16 38 H 0.39 6.47 6.18 -40.82 -0.25 6.21 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.01 0.11 6.86 -51.92 -0.36 -0.25 16 42 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 47 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -29.38 362.36 -9.48 -38.87 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -8.60 Total: 5.66 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.25 Total: -4.92 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.16 Total: -47.52 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.42 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.38 -9.48 -38.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458717017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.228 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds