Wall clock time and date at job start Tue Mar 31 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01836 * 2 1 4 4 C 1.54268 * 110.03412 * 121.39209 * 2 1 3 5 5 C 1.54887 * 104.19498 * 142.89489 * 4 2 1 6 6 C 1.54888 * 102.75281 * 322.05663 * 5 4 2 7 7 C 1.53875 * 110.03401 * 238.61204 * 2 1 3 8 8 H 1.09000 * 110.03798 * 121.42953 * 7 2 1 9 9 C 1.53007 * 110.03147 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47091 * 175.00536 * 9 7 2 11 11 C 1.34775 * 120.00013 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00155 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00261 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99779 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46774 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47596 * 300.00633 * 15 14 13 17 17 C 1.53005 * 109.46959 * 60.00406 * 15 14 13 18 18 C 1.50699 * 109.46917 * 180.02562 * 15 14 13 19 19 H 1.07995 * 120.00304 * 0.02562 * 18 15 14 20 20 C 1.37882 * 119.99497 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00252 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 119.99522 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47569 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47391 * 119.99941 * 22 20 18 25 25 H 1.48509 * 109.46724 * 239.99789 * 22 20 18 26 26 H 1.09002 * 109.47153 * 300.69904 * 1 2 3 27 27 H 1.09001 * 109.46832 * 180.70094 * 1 2 3 28 28 H 1.09004 * 109.47261 * 60.70076 * 1 2 3 29 29 H 1.08997 * 110.48505 * 261.56885 * 4 2 1 30 30 H 1.08996 * 110.48682 * 24.21865 * 4 2 1 31 31 H 1.09005 * 110.75937 * 80.37435 * 5 4 2 32 32 H 1.08996 * 110.75770 * 203.55913 * 5 4 2 33 33 H 1.09002 * 110.49085 * 156.61711 * 6 5 4 34 34 H 1.08992 * 110.48719 * 279.26678 * 6 5 4 35 35 H 1.09006 * 109.46446 * 295.00242 * 9 7 2 36 36 H 1.08999 * 109.46990 * 54.99728 * 9 7 2 37 37 H 0.97009 * 120.00487 * 359.97438 * 10 9 7 38 38 H 0.96999 * 119.99830 * 0.02562 * 13 11 10 39 39 H 1.08993 * 109.47332 * 299.99952 * 14 13 11 40 40 H 1.08995 * 109.46772 * 60.00836 * 14 13 11 41 41 H 1.09000 * 109.47140 * 59.99615 * 16 15 14 42 42 H 1.08997 * 109.47768 * 179.97438 * 16 15 14 43 43 H 1.09007 * 109.46995 * 300.00199 * 16 15 14 44 44 H 1.09004 * 109.47235 * 59.99366 * 17 15 14 45 45 H 1.08995 * 109.47138 * 179.97438 * 17 15 14 46 46 H 1.09000 * 109.47066 * 299.99949 * 17 15 14 47 47 H 0.97003 * 119.99854 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 1.2372 5 6 3.3137 -1.5004 0.7197 6 6 2.8875 -1.9410 -0.7027 7 6 2.0571 -0.7529 -1.2341 8 1 2.6867 -0.0945 -1.8325 9 6 0.8861 -1.2664 -2.0745 10 7 1.3980 -1.8759 -3.3043 11 6 0.5418 -2.3996 -4.2038 12 8 -0.6554 -2.3666 -3.9944 13 7 1.0127 -2.9599 -5.3356 14 6 0.0819 -3.5296 -6.3131 15 6 0.8689 -4.0959 -7.4967 16 6 1.6771 -2.9758 -8.1546 17 6 1.8197 -5.1876 -7.0014 18 6 -0.0885 -4.6814 -8.5024 19 1 -1.1519 -4.6522 -8.3163 20 6 0.3933 -5.2545 -9.6603 21 7 1.6882 -5.2897 -9.8871 22 14 -0.7936 -5.9796 -10.9073 23 1 -2.1864 -5.8142 -10.4196 24 1 -0.6369 -5.2774 -12.2063 25 1 -0.5009 -7.4244 -11.0872 26 1 -0.3633 0.5247 0.8837 27 1 -0.3633 -1.0276 0.0126 28 1 -0.3634 0.5029 -0.8962 29 1 2.3298 -0.0527 2.0254 30 1 1.3143 -1.4653 1.5972 31 1 4.1711 -0.8287 0.6754 32 1 3.5345 -2.3654 1.3451 33 1 3.7638 -2.1042 -1.3302 34 1 2.2772 -2.8428 -0.6559 35 1 0.3289 -2.0103 -1.5049 36 1 0.2283 -0.4349 -2.3274 37 1 2.3532 -1.9019 -3.4717 38 1 1.9678 -2.9866 -5.5026 39 1 -0.4941 -4.3273 -5.8442 40 1 -0.5950 -2.7518 -6.6663 41 1 2.3696 -2.5520 -7.4273 42 1 2.2381 -3.3794 -8.9975 43 1 0.9998 -2.1981 -8.5074 44 1 1.2440 -5.9856 -6.5325 45 1 2.3800 -5.5914 -7.8446 46 1 2.5122 -4.7637 -6.2741 47 1 2.0270 -5.6926 -10.7019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458717019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:32 Heat of formation + Delta-G solvation = -60.364124 kcal Electronic energy + Delta-G solvation = -22814.252048 eV Core-core repulsion = 19609.800348 eV Total energy + Delta-G solvation = -3204.451700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.89677 -38.83126 -36.40833 -34.21893 -33.18338 -31.68894 -30.86913 -29.50010 -25.77123 -25.69115 -25.33530 -24.99646 -23.83368 -21.07827 -20.47894 -19.16830 -18.73497 -17.77058 -16.67366 -15.78469 -15.59599 -15.17127 -14.92442 -14.67149 -14.04620 -14.01455 -13.84913 -13.52048 -12.93148 -12.86925 -12.59360 -12.47924 -12.20648 -12.13802 -11.36268 -11.31768 -11.17531 -11.06058 -10.98784 -10.87209 -10.83569 -10.79589 -10.63446 -10.53855 -10.34838 -10.18279 -9.71098 -9.59604 -9.26924 -8.86341 -8.75011 -8.38851 -8.11820 -5.99853 -4.09476 3.18929 3.28875 3.37449 3.42947 3.72553 4.28551 4.30769 4.40884 4.42707 4.84842 4.97926 5.06189 5.11146 5.25330 5.27039 5.28637 5.34050 5.35491 5.56719 5.61432 5.75029 5.76509 5.79538 5.87893 5.96820 6.09076 6.12728 6.23591 6.26702 6.41143 6.54570 6.75920 6.84541 6.86294 6.95432 7.06831 7.15718 7.36310 7.47790 7.59230 7.72703 8.04356 8.15876 8.41693 8.56099 8.90948 9.12623 9.56218 11.01628 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040013 B = 0.002948 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.603036 B = 9496.193234 C = 9850.621990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.121 4.121 5 C -0.126 4.126 6 C -0.121 4.121 7 C -0.102 4.102 8 H 0.077 0.923 9 C 0.146 3.854 10 N -0.755 5.755 11 C 0.696 3.304 12 O -0.602 6.602 13 N -0.734 5.734 14 C 0.151 3.849 15 C 0.056 3.944 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.504 4.504 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.392 0.608 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.005 0.995 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.005 0.995 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.496 9.008 18.747 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.163 4.163 6 C -0.159 4.159 7 C -0.121 4.121 8 H 0.096 0.904 9 C 0.022 3.978 10 N -0.411 5.411 11 C 0.396 3.604 12 O -0.481 6.481 13 N -0.389 5.389 14 C 0.028 3.972 15 C 0.055 3.945 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.543 4.543 19 H 0.076 0.924 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.225 0.775 38 H 0.227 0.773 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.024 0.976 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.470 8.960 18.770 21.274 hybrid contribution 0.332 -0.406 -0.889 1.032 sum 4.802 8.554 17.882 20.396 Atomic orbital electron populations 1.22027 0.94822 1.02476 1.01813 1.21691 0.96009 0.99092 0.93784 0.90895 1.22466 0.97406 0.98952 0.97004 1.22479 0.97633 0.99854 0.96338 1.22490 0.99442 0.97870 0.96058 1.22087 0.96493 0.97213 0.96283 0.90436 1.21429 0.95275 0.97308 0.83828 1.45188 1.09086 1.65180 1.21682 1.16091 0.85279 0.78650 0.80364 1.90875 1.13958 1.64646 1.78603 1.45505 1.10924 1.62410 1.20022 1.21560 0.91237 0.96242 0.88195 1.18364 0.93373 0.92378 0.90387 1.21816 0.98663 0.97383 1.00865 1.21816 0.98560 0.98704 0.99641 1.21042 0.92848 1.37382 1.02978 0.92356 1.24882 0.95121 0.95731 0.97838 1.69817 1.11617 1.45081 1.26022 0.86520 0.81452 0.78729 0.81215 1.19738 1.21089 1.21093 0.92872 0.91950 0.91992 0.91839 0.91396 0.91632 0.91642 0.91609 0.91115 0.91721 0.91618 0.77546 0.77283 0.93044 0.93045 0.97564 0.89678 0.95473 0.95484 0.89676 0.97555 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 7.87 37.16 0.29 -0.98 16 2 C -0.09 -0.67 3.50 -89.50 -0.31 -0.98 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.12 -0.85 6.36 -25.07 -0.16 -1.01 16 5 C -0.13 -0.89 6.91 -24.74 -0.17 -1.06 16 6 C -0.12 -0.99 6.09 -25.01 -0.15 -1.14 16 7 C -0.10 -0.88 2.97 -89.44 -0.27 -1.14 16 8 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 9 C 0.15 1.71 3.78 -4.04 -0.02 1.70 16 10 N -0.75 -10.14 5.41 -65.22 -0.35 -10.49 16 11 C 0.70 12.79 8.57 -86.92 -0.74 12.04 16 12 O -0.60 -13.48 16.34 5.29 0.09 -13.39 16 13 N -0.73 -13.55 4.96 -65.22 -0.32 -13.88 16 14 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 15 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 16 C -0.13 -2.96 8.08 37.15 0.30 -2.66 16 17 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 18 C -0.50 -13.37 8.01 -34.44 -0.28 -13.64 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.89 -23.78 9.35 55.43 0.52 -23.26 16 22 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.56 6.82 -51.93 -0.35 0.21 16 28 H 0.06 0.55 6.66 -51.93 -0.35 0.21 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.50 7.84 -51.93 -0.41 0.09 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.66 7.76 -51.93 -0.40 0.26 16 35 H 0.06 0.83 6.89 -51.93 -0.36 0.48 16 36 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 37 H 0.39 4.25 8.37 -40.82 -0.34 3.91 16 38 H 0.39 6.48 6.18 -40.82 -0.25 6.23 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 42 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 47 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -29.36 355.73 -9.46 -38.82 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -8.33 Total: 6.34 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.39 Total: -5.37 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -0.16 Total: -47.63 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.09 Total: -13.39 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.36 -9.46 -38.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458717019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.544 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds