Wall clock time and date at job start Tue Mar 31 2020 06:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 110.43759 * 2 1 4 4 C 1.54267 * 110.48638 * 237.31056 * 2 1 3 5 5 C 1.53872 * 106.60070 * 217.71463 * 4 2 1 6 6 C 1.54266 * 106.59728 * 0.02562 * 5 4 2 7 7 H 1.09004 * 110.60217 * 264.87477 * 6 5 4 8 8 C 1.53004 * 110.48671 * 142.28656 * 6 5 4 9 9 N 1.46498 * 109.46980 * 70.22506 * 8 6 5 10 10 C 1.34775 * 120.00167 * 180.02562 * 9 8 6 11 11 O 1.21586 * 120.00007 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00016 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47075 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47327 * 299.99802 * 14 13 12 16 16 C 1.52998 * 109.47419 * 60.00193 * 14 13 12 17 17 C 1.50703 * 109.47065 * 179.97438 * 14 13 12 18 18 H 1.08002 * 120.00078 * 1.34588 * 17 14 13 19 19 C 1.37880 * 120.00212 * 181.34464 * 17 14 13 20 20 N 1.31508 * 120.00211 * 193.97530 * 19 17 14 21 21 Si 1.86804 * 119.99707 * 13.98083 * 19 17 14 22 22 H 1.48497 * 109.47183 * 84.54914 * 21 19 17 23 23 H 1.48496 * 109.46645 * 204.54590 * 21 19 17 24 24 H 1.48493 * 109.46984 * 324.54591 * 21 19 17 25 25 C 1.54894 * 104.19805 * 23.61201 * 6 5 4 26 26 H 1.09004 * 109.47145 * 297.46462 * 1 2 3 27 27 H 1.09000 * 109.46780 * 57.45606 * 1 2 3 28 28 H 1.08993 * 109.47209 * 177.45942 * 1 2 3 29 29 H 1.08993 * 110.03179 * 337.00173 * 4 2 1 30 30 H 1.08997 * 110.02686 * 98.43058 * 4 2 1 31 31 H 1.09004 * 110.03424 * 240.72089 * 5 4 2 32 32 H 1.09002 * 110.03403 * 119.28464 * 5 4 2 33 33 H 1.09000 * 109.47357 * 190.22670 * 8 6 5 34 34 H 1.09005 * 109.47283 * 310.22900 * 8 6 5 35 35 H 0.97005 * 120.00031 * 0.02562 * 9 8 6 36 36 H 0.96997 * 120.00484 * 0.02562 * 12 10 9 37 37 H 1.09004 * 109.46910 * 300.00452 * 13 12 10 38 38 H 1.09003 * 109.47166 * 60.00107 * 13 12 10 39 39 H 1.08998 * 109.46833 * 69.37162 * 15 14 13 40 40 H 1.08995 * 109.47404 * 189.36609 * 15 14 13 41 41 H 1.08995 * 109.47143 * 309.37073 * 15 14 13 42 42 H 1.09004 * 109.47063 * 59.99483 * 16 14 13 43 43 H 1.08994 * 109.47392 * 179.97438 * 16 14 13 44 44 H 1.09003 * 109.46983 * 299.99887 * 16 14 13 45 45 H 0.96995 * 120.00066 * 180.02562 * 20 19 17 46 46 H 1.08996 * 110.75492 * 80.36892 * 25 6 5 47 47 H 1.08993 * 110.75436 * 203.74247 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0700 -0.7805 -1.2162 5 6 3.3165 -1.5416 -0.7320 6 6 3.4903 -1.1976 0.7617 7 1 4.1898 -0.3709 0.8861 8 6 3.9687 -2.4239 1.5415 9 7 5.3543 -2.7261 1.1744 10 6 5.9884 -3.7726 1.7395 11 8 5.4102 -4.4662 2.5537 12 7 7.2630 -4.0509 1.4012 13 6 7.9520 -5.1888 2.0151 14 6 9.3756 -5.2815 1.4624 15 6 9.3222 -5.4755 -0.0544 16 6 10.1332 -3.9921 1.7852 17 6 10.0846 -6.4517 2.0943 18 1 9.5642 -7.0805 2.8015 19 6 11.3976 -6.7194 1.7696 20 7 11.9325 -7.8761 2.0943 21 14 12.4166 -5.4391 0.8686 22 1 12.9927 -4.4849 1.8498 23 1 13.5145 -6.1116 0.1287 24 1 11.5526 -4.7031 -0.0890 25 6 2.0715 -0.7813 1.2233 26 1 -0.3634 0.4740 0.9119 27 1 -0.3633 0.5528 -0.8663 28 1 -0.3633 -1.0266 -0.0455 29 1 1.3176 -1.4842 -1.5721 30 1 2.3412 -0.0884 -2.0134 31 1 4.1929 -1.2188 -1.2942 32 1 3.1692 -2.6148 -0.8529 33 1 3.9125 -2.2194 2.6107 34 1 3.3348 -3.2775 1.3011 35 1 5.8155 -2.1730 0.5245 36 1 7.7242 -3.4978 0.7514 37 1 7.9904 -5.0504 3.0956 38 1 7.4121 -6.1074 1.7854 39 1 8.9623 -4.5607 -0.5252 40 1 10.3201 -5.7072 -0.4264 41 1 8.6461 -6.2967 -0.2920 42 1 10.1712 -3.8539 2.8658 43 1 11.1475 -4.0584 1.3918 44 1 9.6206 -3.1455 1.3285 45 1 12.8563 -8.0643 1.8662 46 1 1.4576 -1.6593 1.4240 47 1 2.1243 -0.1367 2.1006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458732226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:47 Heat of formation + Delta-G solvation = -46.135355 kcal Electronic energy + Delta-G solvation = -22583.331065 eV Core-core repulsion = 19379.496370 eV Total energy + Delta-G solvation = -3203.834694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.84838 -38.81287 -36.81908 -34.64531 -33.25371 -31.74312 -31.17906 -29.50884 -26.73287 -26.36200 -25.49871 -24.75522 -23.69179 -20.85300 -20.33003 -19.85519 -19.14292 -17.97778 -16.56703 -16.09318 -15.82175 -15.27247 -15.23671 -14.57882 -14.32294 -13.84208 -13.79050 -13.72559 -13.43863 -13.16149 -12.91392 -12.65165 -12.56059 -12.19187 -12.15980 -12.02790 -11.37250 -11.32431 -11.21029 -11.01763 -10.92942 -10.91376 -10.67498 -10.40586 -10.28593 -10.15394 -10.04517 -9.78735 -9.11440 -8.99071 -8.67112 -8.46850 -8.29105 -6.13177 -4.10142 3.05660 3.24844 3.31800 3.39323 3.60813 4.19516 4.25755 4.36718 4.36857 4.68877 4.84282 4.98235 5.04991 5.11390 5.17617 5.24180 5.28078 5.37701 5.43432 5.49918 5.65627 5.70232 5.77033 5.79444 5.80683 5.83945 5.94863 6.07045 6.09652 6.10735 6.13725 6.37327 6.47748 6.55869 6.63968 6.65021 6.73325 6.85963 7.02708 7.23433 7.30183 7.45933 7.74948 8.36854 8.49823 8.92428 8.99736 9.50771 10.99965 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040905 B = 0.002872 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.341938 B = 9747.982928 C =10048.028764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.105 4.105 7 H 0.080 0.920 8 C 0.148 3.852 9 N -0.753 5.753 10 C 0.698 3.302 11 O -0.597 6.597 12 N -0.739 5.739 13 C 0.161 3.839 14 C 0.028 3.972 15 C -0.141 4.141 16 C -0.146 4.146 17 C -0.512 4.512 18 H 0.077 0.923 19 C 0.074 3.926 20 N -0.891 5.891 21 Si 0.886 3.114 22 H -0.286 1.286 23 H -0.306 1.306 24 H -0.249 1.249 25 C -0.112 4.112 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.392 0.608 36 H 0.391 0.609 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.021 0.979 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.040 0.960 44 H 0.029 0.971 45 H 0.264 0.736 46 H 0.073 0.927 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.120 17.839 -7.183 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.159 4.159 6 C -0.124 4.124 7 H 0.098 0.902 8 C 0.024 3.976 9 N -0.410 5.410 10 C 0.397 3.603 11 O -0.475 6.475 12 N -0.394 5.394 13 C 0.038 3.962 14 C 0.027 3.973 15 C -0.198 4.198 16 C -0.203 4.203 17 C -0.550 4.550 18 H 0.095 0.905 19 C -0.128 4.128 20 N -0.528 5.528 21 Si 0.719 3.281 22 H -0.214 1.214 23 H -0.235 1.235 24 H -0.175 1.175 25 C -0.150 4.150 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.225 0.775 36 H 0.225 0.775 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.491 17.019 -6.405 25.934 hybrid contribution 1.241 1.167 -1.054 2.003 sum -17.250 18.186 -7.459 26.152 Atomic orbital electron populations 1.21812 0.95011 1.01887 1.01535 1.21964 0.95497 0.99199 0.94934 0.90872 1.22219 0.97352 0.98778 0.97479 1.22237 0.97904 1.00781 0.95005 1.22253 0.97564 0.97380 0.95158 0.90187 1.21166 0.81399 0.96250 0.98823 1.45129 1.14750 1.32761 1.48325 1.16051 0.81808 0.80973 0.81425 1.90899 1.66866 1.52125 1.37652 1.45495 1.11910 1.34475 1.47483 1.21361 0.92200 0.85988 0.96693 1.18728 0.91044 0.94595 0.92925 1.22281 1.01458 0.98499 0.97584 1.22347 0.99355 0.97546 1.01075 1.20724 0.96999 1.10552 1.26688 0.90504 1.24977 0.97903 0.94844 0.95069 1.69949 1.14384 1.21084 1.47392 0.87285 0.79071 0.81403 0.80358 1.21403 1.23461 1.17550 1.22557 0.94855 1.00057 0.97507 0.92680 0.92828 0.92525 0.91710 0.92053 0.91854 0.91305 0.91902 0.91787 0.77470 0.77482 0.92253 0.92146 0.96025 0.92601 0.93407 0.92803 0.94130 0.95241 0.92582 0.90867 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.14 37.16 0.34 -0.50 16 2 C -0.10 -0.62 3.46 -88.94 -0.31 -0.93 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.12 -0.81 6.37 -25.61 -0.16 -0.97 16 5 C -0.12 -0.91 6.23 -25.61 -0.16 -1.07 16 6 C -0.10 -0.81 2.89 -88.96 -0.26 -1.07 16 7 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 8 C 0.15 1.62 5.00 -4.04 -0.02 1.59 16 9 N -0.75 -9.27 5.45 -65.22 -0.36 -9.63 16 10 C 0.70 11.97 8.57 -86.92 -0.74 11.23 16 11 O -0.60 -12.83 16.34 5.29 0.09 -12.75 16 12 N -0.74 -12.46 5.01 -65.22 -0.33 -12.79 16 13 C 0.16 3.31 4.49 -4.04 -0.02 3.29 16 14 C 0.03 0.62 0.50 -155.66 -0.08 0.55 16 15 C -0.14 -2.88 7.53 37.16 0.28 -2.60 16 16 C -0.15 -2.98 7.52 37.16 0.28 -2.71 16 17 C -0.51 -13.85 8.62 -34.44 -0.30 -14.15 16 18 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 19 C 0.07 2.08 5.32 -17.82 -0.09 1.99 16 20 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 21 Si 0.89 21.17 22.79 -169.99 -3.87 17.30 16 22 H -0.29 -6.82 7.10 56.52 0.40 -6.42 16 23 H -0.31 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.25 -5.41 4.65 56.52 0.26 -5.15 16 25 C -0.11 -0.78 5.75 -24.72 -0.14 -0.92 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.06 0.44 7.79 -51.93 -0.40 0.03 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.59 7.71 -51.93 -0.40 0.19 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.77 7.95 -51.93 -0.41 0.36 16 35 H 0.39 3.76 8.45 -40.82 -0.34 3.42 16 36 H 0.39 5.65 6.27 -40.82 -0.26 5.39 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 40 H 0.06 1.22 4.30 -51.93 -0.22 0.99 16 41 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.87 2.25 -51.93 -0.12 0.76 16 44 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.07 0.54 7.97 -51.93 -0.41 0.12 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -31.61 352.55 -8.25 -39.86 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.48 Total: 4.97 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.38 Total: -6.27 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.09 Total: -48.42 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -3.87 Total: 17.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.61 -8.25 -39.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458732226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.271 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds