Wall clock time and date at job start Tue Mar 31 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 110.43759 * 2 1 4 4 C 1.54267 * 110.48638 * 237.31056 * 2 1 3 5 5 C 1.53872 * 106.60070 * 217.71463 * 4 2 1 6 6 C 1.54266 * 106.59728 * 0.02562 * 5 4 2 7 7 H 1.09004 * 110.60217 * 264.87477 * 6 5 4 8 8 C 1.53004 * 110.48671 * 142.28656 * 6 5 4 9 9 N 1.46498 * 109.46980 * 70.22506 * 8 6 5 10 10 C 1.34775 * 120.00167 * 180.02562 * 9 8 6 11 11 O 1.21586 * 120.00007 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00016 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47075 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47327 * 299.99802 * 14 13 12 16 16 C 1.52998 * 109.47419 * 60.00193 * 14 13 12 17 17 C 1.50703 * 109.47065 * 179.97438 * 14 13 12 18 18 H 1.08002 * 120.00078 * 1.34588 * 17 14 13 19 19 C 1.37880 * 120.00212 * 181.34464 * 17 14 13 20 20 N 1.31508 * 120.00211 * 193.97530 * 19 17 14 21 21 Si 1.86804 * 119.99707 * 13.98083 * 19 17 14 22 22 H 1.48497 * 109.47183 * 84.54914 * 21 19 17 23 23 H 1.48496 * 109.46645 * 204.54590 * 21 19 17 24 24 H 1.48493 * 109.46984 * 324.54591 * 21 19 17 25 25 C 1.54894 * 104.19805 * 23.61201 * 6 5 4 26 26 H 1.09004 * 109.47145 * 297.46462 * 1 2 3 27 27 H 1.09000 * 109.46780 * 57.45606 * 1 2 3 28 28 H 1.08993 * 109.47209 * 177.45942 * 1 2 3 29 29 H 1.08993 * 110.03179 * 337.00173 * 4 2 1 30 30 H 1.08997 * 110.02686 * 98.43058 * 4 2 1 31 31 H 1.09004 * 110.03424 * 240.72089 * 5 4 2 32 32 H 1.09002 * 110.03403 * 119.28464 * 5 4 2 33 33 H 1.09000 * 109.47357 * 190.22670 * 8 6 5 34 34 H 1.09005 * 109.47283 * 310.22900 * 8 6 5 35 35 H 0.97005 * 120.00031 * 0.02562 * 9 8 6 36 36 H 0.96997 * 120.00484 * 0.02562 * 12 10 9 37 37 H 1.09004 * 109.46910 * 300.00452 * 13 12 10 38 38 H 1.09003 * 109.47166 * 60.00107 * 13 12 10 39 39 H 1.08998 * 109.46833 * 69.37162 * 15 14 13 40 40 H 1.08995 * 109.47404 * 189.36609 * 15 14 13 41 41 H 1.08995 * 109.47143 * 309.37073 * 15 14 13 42 42 H 1.09004 * 109.47063 * 59.99483 * 16 14 13 43 43 H 1.08994 * 109.47392 * 179.97438 * 16 14 13 44 44 H 1.09003 * 109.46983 * 299.99887 * 16 14 13 45 45 H 0.96995 * 120.00066 * 180.02562 * 20 19 17 46 46 H 1.08996 * 110.75492 * 80.36892 * 25 6 5 47 47 H 1.08993 * 110.75436 * 203.74247 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0700 -0.7805 -1.2162 5 6 3.3165 -1.5416 -0.7320 6 6 3.4903 -1.1976 0.7617 7 1 4.1898 -0.3709 0.8861 8 6 3.9687 -2.4239 1.5415 9 7 5.3543 -2.7261 1.1744 10 6 5.9884 -3.7726 1.7395 11 8 5.4102 -4.4662 2.5537 12 7 7.2630 -4.0509 1.4012 13 6 7.9520 -5.1888 2.0151 14 6 9.3756 -5.2815 1.4624 15 6 9.3222 -5.4755 -0.0544 16 6 10.1332 -3.9921 1.7852 17 6 10.0846 -6.4517 2.0943 18 1 9.5642 -7.0805 2.8015 19 6 11.3976 -6.7194 1.7696 20 7 11.9325 -7.8761 2.0943 21 14 12.4166 -5.4391 0.8686 22 1 12.9927 -4.4849 1.8498 23 1 13.5145 -6.1116 0.1287 24 1 11.5526 -4.7031 -0.0890 25 6 2.0715 -0.7813 1.2233 26 1 -0.3634 0.4740 0.9119 27 1 -0.3633 0.5528 -0.8663 28 1 -0.3633 -1.0266 -0.0455 29 1 1.3176 -1.4842 -1.5721 30 1 2.3412 -0.0884 -2.0134 31 1 4.1929 -1.2188 -1.2942 32 1 3.1692 -2.6148 -0.8529 33 1 3.9125 -2.2194 2.6107 34 1 3.3348 -3.2775 1.3011 35 1 5.8155 -2.1730 0.5245 36 1 7.7242 -3.4978 0.7514 37 1 7.9904 -5.0504 3.0956 38 1 7.4121 -6.1074 1.7854 39 1 8.9623 -4.5607 -0.5252 40 1 10.3201 -5.7072 -0.4264 41 1 8.6461 -6.2967 -0.2920 42 1 10.1712 -3.8539 2.8658 43 1 11.1475 -4.0584 1.3918 44 1 9.6206 -3.1455 1.3285 45 1 12.8563 -8.0643 1.8662 46 1 1.4576 -1.6593 1.4240 47 1 2.1243 -0.1367 2.1006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458732226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:46 Heat of formation + Delta-G solvation = -67.912944 kcal Electronic energy + Delta-G solvation = -22584.275412 eV Core-core repulsion = 19379.496370 eV Total energy + Delta-G solvation = -3204.779041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12903 -39.58941 -38.45529 -35.73266 -34.96717 -33.45731 -32.13432 -30.14676 -28.03621 -27.82837 -27.09125 -26.26696 -24.51362 -22.06766 -21.12974 -20.92813 -20.42797 -19.33515 -18.03274 -17.36368 -17.09236 -16.92642 -16.50028 -15.55601 -15.47006 -15.19282 -14.92318 -14.78860 -14.48598 -14.35416 -14.30973 -13.96426 -13.88999 -13.74000 -13.46680 -12.91111 -12.73179 -12.38034 -12.13587 -11.98160 -11.94311 -11.83413 -11.75028 -11.66048 -11.53279 -11.42900 -11.30515 -11.16742 -11.03241 -10.60711 -10.38692 -10.30613 -9.66326 -8.28975 -6.30725 1.37625 1.38950 1.52222 1.80890 2.22057 2.35983 3.06886 3.39668 3.62779 3.68279 3.84692 4.09155 4.26722 4.34384 4.36329 4.42970 4.48196 4.53454 4.69868 4.74245 4.76191 4.77088 4.83147 4.85146 4.87218 4.89781 4.96483 5.01493 5.07933 5.13911 5.17817 5.20186 5.24382 5.35179 5.38839 5.45201 5.50197 5.58117 5.59749 5.61903 5.74531 5.81437 6.09416 6.32644 6.73564 7.19687 7.33896 7.66056 8.88323 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040905 B = 0.002872 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.341938 B = 9747.982928 C =10048.028764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.094 4.094 7 H 0.094 0.906 8 C 0.148 3.852 9 N -0.730 5.730 10 C 0.695 3.305 11 O -0.645 6.645 12 N -0.726 5.726 13 C 0.177 3.823 14 C 0.028 3.972 15 C -0.140 4.140 16 C -0.146 4.146 17 C -0.518 4.518 18 H 0.026 0.974 19 C 0.014 3.986 20 N -0.947 5.947 21 Si 0.947 3.053 22 H -0.282 1.282 23 H -0.316 1.316 24 H -0.202 1.202 25 C -0.113 4.113 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.411 0.589 36 H 0.408 0.592 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.039 0.961 42 H 0.045 0.955 43 H 0.035 0.965 44 H 0.075 0.925 45 H 0.264 0.736 46 H 0.065 0.935 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.604 21.746 -9.520 30.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.157 4.157 5 C -0.159 4.159 6 C -0.112 4.112 7 H 0.112 0.888 8 C 0.024 3.976 9 N -0.387 5.387 10 C 0.395 3.605 11 O -0.527 6.527 12 N -0.382 5.382 13 C 0.052 3.948 14 C 0.027 3.973 15 C -0.197 4.197 16 C -0.202 4.202 17 C -0.556 4.556 18 H 0.044 0.956 19 C -0.183 4.183 20 N -0.586 5.586 21 Si 0.776 3.224 22 H -0.209 1.209 23 H -0.246 1.246 24 H -0.126 1.126 25 C -0.151 4.151 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.247 0.753 36 H 0.246 0.754 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.009 21.003 -8.791 29.660 hybrid contribution 1.259 -0.127 -0.241 1.288 sum -17.750 20.876 -9.032 28.852 Atomic orbital electron populations 1.21809 0.94710 1.01744 1.01982 1.21955 0.95768 0.99329 0.94219 0.90128 1.22217 0.96880 0.98818 0.97829 1.22233 0.98823 1.00075 0.94752 1.22188 0.98138 0.95996 0.94909 0.88803 1.21266 0.80257 0.97243 0.98854 1.44940 1.15024 1.31156 1.47530 1.16223 0.81656 0.81523 0.81123 1.90878 1.67884 1.54050 1.39890 1.45088 1.11892 1.33594 1.47610 1.20862 0.91769 0.86485 0.95655 1.18653 0.91121 0.93620 0.93894 1.22205 1.00955 1.00578 0.95951 1.22280 0.99068 0.97704 1.01186 1.21034 0.97283 1.11637 1.25662 0.95554 1.25895 0.99183 0.96801 0.96402 1.70116 1.14803 1.23732 1.49974 0.86298 0.77288 0.78767 0.80029 1.20913 1.24551 1.12577 1.22575 0.94250 1.00043 0.98213 0.92389 0.92246 0.93005 0.92056 0.91185 0.90771 0.92704 0.92953 0.93226 0.75274 0.75447 0.94385 0.94620 0.91446 0.93582 0.94213 0.93589 0.94653 0.90670 0.92686 0.91622 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.14 71.98 0.66 -0.74 16 2 C -0.09 -0.96 3.46 -9.71 -0.03 -1.00 16 3 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.12 -1.30 6.37 31.32 0.20 -1.10 16 5 C -0.12 -1.49 6.23 31.32 0.20 -1.30 16 6 C -0.09 -1.21 2.89 -9.72 -0.03 -1.24 16 7 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 8 C 0.15 3.01 5.00 86.38 0.43 3.44 16 9 N -0.73 -16.13 5.45 -478.53 -2.61 -18.74 16 10 C 0.70 22.82 8.57 179.06 1.53 24.35 16 11 O -0.64 -27.91 16.34 -3.99 -0.07 -27.98 16 12 N -0.73 -22.72 5.01 -478.53 -2.40 -25.12 16 13 C 0.18 7.27 4.49 86.38 0.39 7.66 16 14 C 0.03 1.21 0.50 -52.93 -0.03 1.18 16 15 C -0.14 -5.27 7.53 71.98 0.54 -4.73 16 16 C -0.15 -5.41 7.52 71.98 0.54 -4.87 16 17 C -0.52 -28.87 8.62 25.60 0.22 -28.65 16 18 H 0.03 1.67 7.99 -2.91 -0.02 1.65 16 19 C 0.01 0.82 5.32 84.66 0.45 1.27 16 20 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 21 Si 0.95 42.68 22.79 68.60 1.56 44.24 16 22 H -0.28 -12.45 7.10 99.48 0.71 -11.74 16 23 H -0.32 -14.71 7.11 99.48 0.71 -14.00 16 24 H -0.20 -7.60 4.65 99.48 0.46 -7.14 16 25 C -0.11 -1.35 5.75 31.90 0.18 -1.17 16 26 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.55 8.08 -2.39 -0.02 0.53 16 29 H 0.06 0.71 7.79 -2.39 -0.02 0.69 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.05 0.84 7.71 -2.39 -0.02 0.82 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.17 7.95 -2.38 -0.02 1.15 16 35 H 0.41 6.20 8.45 -92.70 -0.78 5.42 16 36 H 0.41 9.85 6.27 -92.71 -0.58 9.27 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.93 7.13 -2.39 -0.02 1.91 16 40 H 0.05 1.83 4.30 -2.39 -0.01 1.82 16 41 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.04 1.36 2.25 -2.39 -0.01 1.36 16 44 H 0.07 2.11 6.86 -2.39 -0.02 2.09 16 45 H 0.26 15.54 8.31 -92.71 -0.77 14.76 16 46 H 0.07 0.89 7.97 -2.39 -0.02 0.87 16 47 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -72.63 352.55 1.39 -71.24 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.66 Total: 22.13 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 5.26 Total: -6.90 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -4.70 Total: -102.74 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.07 Total: -27.98 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.56 Total: 44.24 kcal Total: -72.63 1.39 -71.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458732226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.332 kcal (2) G-P(sol) polarization free energy of solvation -72.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds