Wall clock time and date at job start Tue Mar 31 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08989 * 110.43740 * 2 1 4 4 C 1.54271 * 110.48620 * 122.54589 * 2 1 3 5 5 C 1.53872 * 106.59724 * 142.41994 * 4 2 1 6 6 C 1.54266 * 106.60132 * 359.97438 * 5 4 2 7 7 H 1.08998 * 110.48613 * 95.20476 * 6 5 4 8 8 C 1.53001 * 110.48898 * 217.71267 * 6 5 4 9 9 N 1.46505 * 109.46819 * 291.75819 * 8 6 5 10 10 C 1.34777 * 119.99306 * 180.02562 * 9 8 6 11 11 O 1.21586 * 120.00427 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99577 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00301 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47601 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.46626 * 60.00351 * 14 13 12 16 16 C 1.52994 * 109.47344 * 300.00576 * 14 13 12 17 17 C 1.50704 * 109.47223 * 179.97438 * 14 13 12 18 18 H 1.08000 * 119.99431 * 357.91267 * 17 14 13 19 19 C 1.37869 * 119.99670 * 177.90935 * 17 14 13 20 20 N 1.31515 * 120.00408 * 7.60513 * 19 17 14 21 21 Si 1.86807 * 119.99964 * 187.60399 * 19 17 14 22 22 H 1.48500 * 109.46722 * 265.12340 * 21 19 17 23 23 H 1.48499 * 109.47095 * 145.12403 * 21 19 17 24 24 H 1.48502 * 109.46914 * 25.12223 * 21 19 17 25 25 C 1.54889 * 104.31187 * 336.45683 * 6 5 4 26 26 H 1.08996 * 109.46627 * 298.90887 * 1 2 3 27 27 H 1.08991 * 109.47277 * 58.90911 * 1 2 3 28 28 H 1.09004 * 109.47302 * 178.91185 * 1 2 3 29 29 H 1.08997 * 110.03180 * 23.13396 * 4 2 1 30 30 H 1.08994 * 110.02987 * 261.70205 * 4 2 1 31 31 H 1.09004 * 110.03527 * 240.71431 * 5 4 2 32 32 H 1.08999 * 110.07608 * 119.30753 * 5 4 2 33 33 H 1.08997 * 109.47089 * 171.75687 * 8 6 5 34 34 H 1.09005 * 109.47233 * 51.75604 * 8 6 5 35 35 H 0.96991 * 120.00413 * 0.02562 * 9 8 6 36 36 H 0.97001 * 120.00493 * 359.97438 * 12 10 9 37 37 H 1.09001 * 109.46934 * 59.99727 * 13 12 10 38 38 H 1.09000 * 109.47302 * 300.00697 * 13 12 10 39 39 H 1.09000 * 109.46810 * 185.79122 * 15 14 13 40 40 H 1.08999 * 109.47030 * 305.79270 * 15 14 13 41 41 H 1.08998 * 109.47195 * 65.79407 * 15 14 13 42 42 H 1.09001 * 109.46821 * 299.99545 * 16 14 13 43 43 H 1.09002 * 109.47123 * 59.99823 * 16 14 13 44 44 H 1.08997 * 109.47247 * 179.97438 * 16 14 13 45 45 H 0.96999 * 120.00331 * 179.97438 * 20 19 17 46 46 H 1.09000 * 110.75469 * 156.18868 * 25 6 5 47 47 H 1.08996 * 110.75803 * 279.55806 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0699 -0.7775 1.2182 5 6 3.3185 -1.5370 0.7367 6 6 3.4934 -1.1952 -0.7574 7 1 4.1928 -0.3683 -0.8802 8 6 3.9750 -2.4220 -1.5346 9 7 5.3446 -2.7494 -1.1304 10 6 5.9786 -3.8001 -1.6877 11 8 5.4138 -4.4765 -2.5254 12 7 7.2383 -4.1016 -1.3155 13 6 7.9274 -5.2440 -1.9207 14 6 9.3327 -5.3646 -1.3279 15 6 9.2320 -5.5727 0.1846 16 6 10.1191 -4.0841 -1.6152 17 6 10.0413 -6.5402 -1.9501 18 1 9.5278 -7.1613 -2.6690 19 6 11.3449 -6.8226 -1.6015 20 7 11.9211 -6.1626 -0.6206 21 14 12.2930 -8.1428 -2.5223 22 1 12.1888 -9.4297 -1.7886 23 1 13.7203 -7.7461 -2.6257 24 1 11.7235 -8.3020 -3.8845 25 6 2.0759 -0.7802 -1.2238 26 1 -0.3632 0.4968 0.8996 27 1 -0.3633 0.5306 -0.8800 28 1 -0.3634 -1.0275 -0.0195 29 1 1.3185 -1.4821 1.5744 30 1 2.3390 -0.0836 2.0145 31 1 3.1730 -2.6103 0.8592 32 1 4.1939 -1.2126 1.2992 33 1 3.9530 -2.2069 -2.6030 34 1 3.3211 -3.2674 -1.3207 35 1 5.7950 -2.2100 -0.4619 36 1 7.6889 -3.5623 -0.6469 37 1 7.9995 -5.0957 -2.9982 38 1 7.3670 -6.1563 -1.7164 39 1 10.2307 -5.5558 0.6209 40 1 8.6308 -4.7755 0.6217 41 1 8.7627 -6.5351 0.3885 42 1 10.1909 -3.9359 -2.6927 43 1 9.6064 -3.2341 -1.1648 44 1 11.1201 -4.1698 -1.1925 45 1 12.8382 -6.3615 -0.3751 46 1 2.1311 -0.1363 -2.1015 47 1 1.4630 -1.6586 -1.4257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458732229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:50 Heat of formation + Delta-G solvation = -66.113953 kcal Electronic energy + Delta-G solvation = -22496.573870 eV Core-core repulsion = 19291.872838 eV Total energy + Delta-G solvation = -3204.701031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.74089 -38.71729 -36.44325 -34.55350 -33.20083 -31.58871 -30.63477 -29.42295 -26.50606 -25.69911 -25.43671 -24.68652 -23.58445 -20.77651 -20.27880 -19.78289 -18.72867 -17.96684 -16.50804 -15.82546 -15.74471 -15.13618 -14.75264 -14.49915 -14.24113 -13.76906 -13.69002 -13.55590 -13.32372 -12.96612 -12.81166 -12.46506 -12.14519 -12.10392 -11.40912 -11.32306 -11.19884 -11.16328 -10.97192 -10.90231 -10.86524 -10.82789 -10.65373 -10.61792 -10.35079 -10.18613 -9.71925 -9.59169 -9.27413 -8.89869 -8.77900 -8.36388 -8.12581 -6.00479 -4.08346 3.16716 3.29772 3.37298 3.42793 3.71510 4.24618 4.30968 4.40456 4.43656 4.82614 4.89514 5.03001 5.10201 5.16024 5.26642 5.29163 5.32678 5.42334 5.48271 5.54581 5.69406 5.76472 5.82120 5.85450 5.88370 5.99625 6.14405 6.18778 6.25907 6.40757 6.54319 6.73086 6.83730 6.86060 6.94500 7.06169 7.15151 7.35914 7.46913 7.58578 7.73106 8.02325 8.15150 8.41118 8.55119 8.91185 9.11518 9.56625 11.01578 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046980 B = 0.002696 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.858595 B =10382.602051 C =10654.984676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.105 4.105 7 H 0.080 0.920 8 C 0.149 3.851 9 N -0.753 5.753 10 C 0.696 3.304 11 O -0.601 6.601 12 N -0.734 5.734 13 C 0.151 3.849 14 C 0.056 3.944 15 C -0.128 4.128 16 C -0.129 4.129 17 C -0.506 4.506 18 H 0.058 0.942 19 C 0.067 3.933 20 N -0.885 5.885 21 Si 0.891 3.109 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.111 4.111 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.392 0.608 36 H 0.393 0.607 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.004 0.996 41 H 0.028 0.972 42 H 0.027 0.973 43 H 0.007 0.993 44 H 0.080 0.920 45 H 0.259 0.741 46 H 0.068 0.932 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.105 13.754 4.217 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.160 4.160 6 C -0.124 4.124 7 H 0.098 0.902 8 C 0.024 3.976 9 N -0.410 5.410 10 C 0.396 3.604 11 O -0.481 6.481 12 N -0.389 5.389 13 C 0.028 3.972 14 C 0.055 3.945 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.545 4.545 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.719 3.281 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.149 4.149 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.226 0.774 36 H 0.227 0.773 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.022 0.978 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.026 0.974 44 H 0.098 0.902 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.431 13.096 3.520 22.085 hybrid contribution 1.026 -0.198 0.197 1.063 sum -16.405 12.898 3.717 21.197 Atomic orbital electron populations 1.21804 0.95035 1.01878 1.01495 1.21986 0.95444 0.99232 0.94939 0.90901 1.22213 0.97332 0.98797 0.97461 1.22232 0.97900 1.00797 0.95025 1.22250 0.97517 0.97428 0.95168 0.90186 1.21143 0.81962 0.96004 0.98479 1.45123 1.16203 1.32946 1.46746 1.16092 0.81821 0.80854 0.81618 1.90877 1.67204 1.53413 1.36565 1.45510 1.13195 1.34488 1.45659 1.21551 0.93804 0.85376 0.96501 1.18366 0.88384 0.94797 0.92969 1.21852 1.02020 0.96859 0.97851 1.21784 1.02842 0.95221 0.98784 1.20979 0.97388 1.11639 1.24448 0.92394 1.24875 0.97577 0.96270 0.94739 1.69848 1.13366 1.41739 1.27405 0.86589 0.79208 0.81784 0.80491 1.20842 1.21230 1.19825 1.22575 0.94877 1.00028 0.97461 0.92813 0.92725 0.92541 0.91746 0.92037 0.91318 0.91794 0.91992 0.91894 0.77441 0.77260 0.93009 0.93022 0.89698 0.97750 0.95285 0.95362 0.97371 0.90159 0.93090 0.91317 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.12 37.16 0.34 -0.55 16 2 C -0.10 -0.66 3.45 -88.87 -0.31 -0.97 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.12 -0.86 6.37 -25.61 -0.16 -1.03 16 5 C -0.12 -0.99 6.14 -25.61 -0.16 -1.15 16 6 C -0.10 -0.88 2.90 -88.96 -0.26 -1.14 16 7 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 8 C 0.15 1.74 4.99 -4.04 -0.02 1.72 16 9 N -0.75 -10.06 5.42 -65.22 -0.35 -10.42 16 10 C 0.70 12.77 8.57 -86.92 -0.74 12.03 16 11 O -0.60 -13.51 16.34 5.29 0.09 -13.42 16 12 N -0.73 -13.52 4.91 -65.22 -0.32 -13.84 16 13 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 14 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 15 C -0.13 -2.93 8.07 37.16 0.30 -2.63 16 16 C -0.13 -2.91 8.06 37.15 0.30 -2.61 16 17 C -0.51 -13.42 8.00 -34.44 -0.28 -13.69 16 18 H 0.06 1.56 7.76 -52.49 -0.41 1.15 16 19 C 0.07 1.77 5.12 -17.82 -0.09 1.68 16 20 N -0.89 -23.77 9.48 55.43 0.53 -23.24 16 21 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.11 -0.83 5.78 -24.65 -0.14 -0.98 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.46 7.84 -51.93 -0.41 0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.64 7.74 -51.93 -0.40 0.23 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.80 8.01 -51.93 -0.42 0.39 16 35 H 0.39 4.22 8.39 -40.82 -0.34 3.88 16 36 H 0.39 6.46 6.17 -40.82 -0.25 6.20 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 2.13 6.16 -51.93 -0.32 1.81 16 40 H 0.00 0.07 6.72 -51.93 -0.35 -0.28 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.01 0.15 6.86 -51.93 -0.36 -0.21 16 44 H 0.08 2.00 6.21 -51.93 -0.32 1.68 16 45 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.57 7.98 -51.93 -0.41 0.15 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -29.44 362.58 -9.56 -38.99 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -8.62 Total: 5.39 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.32 Total: -4.80 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.15 Total: -47.50 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.09 Total: -13.42 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.44 -9.56 -38.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458732229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.122 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds