Wall clock time and date at job start Tue Mar 31 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08989 * 110.43740 * 2 1 4 4 C 1.54271 * 110.48620 * 122.54589 * 2 1 3 5 5 C 1.53872 * 106.59724 * 142.41994 * 4 2 1 6 6 C 1.54266 * 106.60132 * 359.97438 * 5 4 2 7 7 H 1.08998 * 110.48613 * 95.20476 * 6 5 4 8 8 C 1.53001 * 110.48898 * 217.71267 * 6 5 4 9 9 N 1.46505 * 109.46819 * 291.75819 * 8 6 5 10 10 C 1.34777 * 119.99306 * 180.02562 * 9 8 6 11 11 O 1.21586 * 120.00427 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99577 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00301 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47601 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.46626 * 60.00351 * 14 13 12 16 16 C 1.52994 * 109.47344 * 300.00576 * 14 13 12 17 17 C 1.50704 * 109.47223 * 179.97438 * 14 13 12 18 18 H 1.08000 * 119.99431 * 357.91267 * 17 14 13 19 19 C 1.37869 * 119.99670 * 177.90935 * 17 14 13 20 20 N 1.31515 * 120.00408 * 7.60513 * 19 17 14 21 21 Si 1.86807 * 119.99964 * 187.60399 * 19 17 14 22 22 H 1.48500 * 109.46722 * 265.12340 * 21 19 17 23 23 H 1.48499 * 109.47095 * 145.12403 * 21 19 17 24 24 H 1.48502 * 109.46914 * 25.12223 * 21 19 17 25 25 C 1.54889 * 104.31187 * 336.45683 * 6 5 4 26 26 H 1.08996 * 109.46627 * 298.90887 * 1 2 3 27 27 H 1.08991 * 109.47277 * 58.90911 * 1 2 3 28 28 H 1.09004 * 109.47302 * 178.91185 * 1 2 3 29 29 H 1.08997 * 110.03180 * 23.13396 * 4 2 1 30 30 H 1.08994 * 110.02987 * 261.70205 * 4 2 1 31 31 H 1.09004 * 110.03527 * 240.71431 * 5 4 2 32 32 H 1.08999 * 110.07608 * 119.30753 * 5 4 2 33 33 H 1.08997 * 109.47089 * 171.75687 * 8 6 5 34 34 H 1.09005 * 109.47233 * 51.75604 * 8 6 5 35 35 H 0.96991 * 120.00413 * 0.02562 * 9 8 6 36 36 H 0.97001 * 120.00493 * 359.97438 * 12 10 9 37 37 H 1.09001 * 109.46934 * 59.99727 * 13 12 10 38 38 H 1.09000 * 109.47302 * 300.00697 * 13 12 10 39 39 H 1.09000 * 109.46810 * 185.79122 * 15 14 13 40 40 H 1.08999 * 109.47030 * 305.79270 * 15 14 13 41 41 H 1.08998 * 109.47195 * 65.79407 * 15 14 13 42 42 H 1.09001 * 109.46821 * 299.99545 * 16 14 13 43 43 H 1.09002 * 109.47123 * 59.99823 * 16 14 13 44 44 H 1.08997 * 109.47247 * 179.97438 * 16 14 13 45 45 H 0.96999 * 120.00331 * 179.97438 * 20 19 17 46 46 H 1.09000 * 110.75469 * 156.18868 * 25 6 5 47 47 H 1.08996 * 110.75803 * 279.55806 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0699 -0.7775 1.2182 5 6 3.3185 -1.5370 0.7367 6 6 3.4934 -1.1952 -0.7574 7 1 4.1928 -0.3683 -0.8802 8 6 3.9750 -2.4220 -1.5346 9 7 5.3446 -2.7494 -1.1304 10 6 5.9786 -3.8001 -1.6877 11 8 5.4138 -4.4765 -2.5254 12 7 7.2383 -4.1016 -1.3155 13 6 7.9274 -5.2440 -1.9207 14 6 9.3327 -5.3646 -1.3279 15 6 9.2320 -5.5727 0.1846 16 6 10.1191 -4.0841 -1.6152 17 6 10.0413 -6.5402 -1.9501 18 1 9.5278 -7.1613 -2.6690 19 6 11.3449 -6.8226 -1.6015 20 7 11.9211 -6.1626 -0.6206 21 14 12.2930 -8.1428 -2.5223 22 1 12.1888 -9.4297 -1.7886 23 1 13.7203 -7.7461 -2.6257 24 1 11.7235 -8.3020 -3.8845 25 6 2.0759 -0.7802 -1.2238 26 1 -0.3632 0.4968 0.8996 27 1 -0.3633 0.5306 -0.8800 28 1 -0.3634 -1.0275 -0.0195 29 1 1.3185 -1.4821 1.5744 30 1 2.3390 -0.0836 2.0145 31 1 3.1730 -2.6103 0.8592 32 1 4.1939 -1.2126 1.2992 33 1 3.9530 -2.2069 -2.6030 34 1 3.3211 -3.2674 -1.3207 35 1 5.7950 -2.2100 -0.4619 36 1 7.6889 -3.5623 -0.6469 37 1 7.9995 -5.0957 -2.9982 38 1 7.3670 -6.1563 -1.7164 39 1 10.2307 -5.5558 0.6209 40 1 8.6308 -4.7755 0.6217 41 1 8.7627 -6.5351 0.3885 42 1 10.1909 -3.9359 -2.6927 43 1 9.6064 -3.2341 -1.1648 44 1 11.1201 -4.1698 -1.1925 45 1 12.8382 -6.3615 -0.3751 46 1 2.1311 -0.1363 -2.1015 47 1 1.4630 -1.6586 -1.4257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458732229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:49 Heat of formation + Delta-G solvation = -82.924354 kcal Electronic energy + Delta-G solvation = -22497.302823 eV Core-core repulsion = 19291.872838 eV Total energy + Delta-G solvation = -3205.429985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.09039 -39.55498 -38.18114 -35.71930 -34.96349 -32.89824 -31.96338 -30.12912 -27.65165 -27.55353 -27.22272 -26.08431 -24.50110 -22.06759 -21.13449 -20.60698 -20.39238 -19.37854 -17.75839 -17.36199 -16.94281 -16.58829 -16.45884 -15.61421 -15.32623 -15.01970 -14.90563 -14.65280 -14.42312 -14.29690 -13.99398 -13.86160 -13.45608 -13.22346 -13.05091 -12.74350 -12.68105 -12.58279 -12.23496 -12.13288 -11.98783 -11.83879 -11.65560 -11.53788 -11.46784 -11.42952 -11.34884 -11.20155 -11.08783 -10.71512 -10.38146 -10.26650 -9.62553 -8.02511 -6.16021 1.42376 1.45782 1.54877 1.84879 2.22924 2.47175 3.21367 3.42313 3.62269 3.68649 3.84517 4.26314 4.34520 4.44355 4.47751 4.52710 4.54771 4.69625 4.72802 4.75070 4.77073 4.83616 4.87684 4.99946 5.02965 5.07104 5.12186 5.13995 5.17419 5.21087 5.23996 5.35218 5.38839 5.39814 5.50037 5.59267 5.61919 5.65314 5.67704 5.69725 6.10945 6.14917 6.22955 6.44442 6.87677 7.19656 7.50882 7.66600 8.97202 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046980 B = 0.002696 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.858595 B =10382.602051 C =10654.984676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.094 4.094 7 H 0.092 0.908 8 C 0.148 3.852 9 N -0.732 5.732 10 C 0.694 3.306 11 O -0.645 6.645 12 N -0.726 5.726 13 C 0.168 3.832 14 C 0.052 3.948 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.530 4.530 18 H 0.044 0.956 19 C 0.029 3.971 20 N -0.898 5.898 21 Si 0.944 3.056 22 H -0.280 1.280 23 H -0.281 1.281 24 H -0.276 1.276 25 C -0.111 4.111 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.409 0.591 36 H 0.405 0.595 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.015 0.985 42 H 0.019 0.981 43 H 0.039 0.961 44 H 0.058 0.942 45 H 0.260 0.740 46 H 0.075 0.925 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.669 15.439 4.990 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.098 0.902 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.113 4.113 7 H 0.110 0.890 8 C 0.024 3.976 9 N -0.388 5.388 10 C 0.394 3.606 11 O -0.527 6.527 12 N -0.382 5.382 13 C 0.043 3.957 14 C 0.051 3.949 15 C -0.175 4.175 16 C -0.176 4.176 17 C -0.568 4.568 18 H 0.062 0.938 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.770 3.230 22 H -0.206 1.206 23 H -0.207 1.207 24 H -0.201 1.201 25 C -0.150 4.150 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.245 0.755 36 H 0.242 0.758 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.001 14.834 4.336 23.725 hybrid contribution 1.148 -0.706 -0.035 1.348 sum -16.854 14.128 4.301 22.409 Atomic orbital electron populations 1.21797 0.94583 1.01774 1.02014 1.21976 0.95831 0.99321 0.94144 0.90189 1.22209 0.96774 0.98845 0.97856 1.22229 0.98841 1.00109 0.94787 1.22191 0.98222 0.95976 0.94929 0.88986 1.21265 0.80639 0.97069 0.98586 1.44969 1.16550 1.31296 1.46019 1.16248 0.81569 0.81473 0.81331 1.90852 1.68098 1.55188 1.38607 1.45201 1.13364 1.33782 1.45828 1.21094 0.93076 0.85933 0.95558 1.18362 0.88943 0.94321 0.93274 1.21688 1.01176 0.97356 0.97312 1.21630 1.01783 0.95906 0.98322 1.21256 0.98110 1.12781 1.24687 0.93794 1.25442 0.98228 0.98012 0.95398 1.69941 1.13473 1.42421 1.27815 0.85773 0.78163 0.79783 0.79251 1.20624 1.20678 1.20086 1.22591 0.94085 1.00079 0.98200 0.92221 0.92319 0.92975 0.91974 0.91199 0.92727 0.90959 0.92906 0.93166 0.75464 0.75790 0.94710 0.94855 0.91748 0.94560 0.96604 0.96146 0.94207 0.92334 0.93036 0.90637 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.12 71.98 0.66 -0.84 16 2 C -0.09 -1.07 3.45 -9.66 -0.03 -1.10 16 3 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.12 -1.45 6.37 31.32 0.20 -1.25 16 5 C -0.12 -1.73 6.14 31.32 0.19 -1.54 16 6 C -0.09 -1.39 2.90 -9.72 -0.03 -1.42 16 7 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 8 C 0.15 3.30 4.99 86.38 0.43 3.73 16 9 N -0.73 -18.30 5.42 -478.52 -2.59 -20.89 16 10 C 0.69 24.83 8.57 179.05 1.53 26.36 16 11 O -0.64 -29.10 16.34 -3.99 -0.07 -29.17 16 12 N -0.73 -25.82 4.91 -478.53 -2.35 -28.17 16 13 C 0.17 7.38 4.50 86.38 0.39 7.77 16 14 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 15 C -0.12 -5.28 8.07 71.98 0.58 -4.70 16 16 C -0.12 -5.26 8.06 71.98 0.58 -4.68 16 17 C -0.53 -28.38 8.00 25.60 0.20 -28.18 16 18 H 0.04 2.41 7.76 -2.91 -0.02 2.39 16 19 C 0.03 1.55 5.12 84.65 0.43 1.98 16 20 N -0.90 -48.09 9.48 21.44 0.20 -47.89 16 21 Si 0.94 42.93 29.54 68.60 2.03 44.96 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 C -0.11 -1.47 5.78 31.94 0.18 -1.28 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.06 0.79 7.84 -2.39 -0.02 0.77 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.94 7.74 -2.38 -0.02 0.92 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.27 8.01 -2.38 -0.02 1.25 16 35 H 0.41 7.66 8.39 -92.71 -0.78 6.88 16 36 H 0.41 12.27 6.17 -92.71 -0.57 11.70 16 37 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 3.18 6.16 -2.39 -0.01 3.17 16 40 H 0.04 1.35 6.72 -2.39 -0.02 1.33 16 41 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.04 1.46 6.86 -2.39 -0.02 1.45 16 44 H 0.06 2.87 6.21 -2.39 -0.01 2.85 16 45 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.96 7.98 -2.39 -0.02 0.95 16 Total: -1.00 -63.15 362.58 2.11 -61.05 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -0.41 Total: 22.86 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 5.30 Total: -2.75 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -4.74 Total: -96.94 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.07 Total: -29.17 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -63.15 2.11 -61.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458732229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.877 kcal (2) G-P(sol) polarization free energy of solvation -63.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds