Wall clock time and date at job start Tue Mar 31 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01836 * 2 1 4 4 C 1.54268 * 110.03412 * 121.39209 * 2 1 3 5 5 C 1.54887 * 104.19498 * 142.89489 * 4 2 1 6 6 C 1.54888 * 102.75281 * 322.05663 * 5 4 2 7 7 H 1.08992 * 110.48719 * 279.26678 * 6 5 4 8 8 C 1.53003 * 110.48972 * 156.75153 * 6 5 4 9 9 N 1.46500 * 109.46715 * 66.45385 * 8 6 5 10 10 C 1.34779 * 119.99797 * 179.97438 * 9 8 6 11 11 O 1.21589 * 119.99997 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00071 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00236 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47333 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47553 * 300.00091 * 14 13 12 16 16 C 1.53001 * 109.46875 * 60.00197 * 14 13 12 17 17 C 1.50700 * 109.47324 * 179.97438 * 14 13 12 18 18 H 1.08003 * 119.99796 * 0.02562 * 17 14 13 19 19 C 1.37871 * 120.00270 * 180.02562 * 17 14 13 20 20 N 1.31517 * 119.99974 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00184 * 180.02562 * 19 17 14 22 22 H 1.48493 * 109.47465 * 90.00087 * 21 19 17 23 23 H 1.48506 * 109.47180 * 210.00393 * 21 19 17 24 24 H 1.48500 * 109.46806 * 329.99844 * 21 19 17 25 25 C 1.53875 * 110.03401 * 238.61204 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.69904 * 1 2 3 27 27 H 1.09001 * 109.46832 * 180.70094 * 1 2 3 28 28 H 1.09004 * 109.47261 * 60.70076 * 1 2 3 29 29 H 1.08997 * 110.48505 * 261.56885 * 4 2 1 30 30 H 1.08997 * 110.48820 * 24.08363 * 4 2 1 31 31 H 1.09005 * 110.75937 * 80.37435 * 5 4 2 32 32 H 1.09001 * 110.75793 * 203.73768 * 5 4 2 33 33 H 1.08998 * 109.46871 * 186.45411 * 8 6 5 34 34 H 1.08998 * 109.46996 * 306.46003 * 8 6 5 35 35 H 0.96997 * 119.99983 * 0.02562 * 9 8 6 36 36 H 0.97005 * 119.99810 * 0.02562 * 12 10 9 37 37 H 1.09004 * 109.47119 * 300.00015 * 13 12 10 38 38 H 1.09001 * 109.47211 * 59.99533 * 13 12 10 39 39 H 1.09000 * 109.47323 * 59.99495 * 15 14 13 40 40 H 1.09000 * 109.47670 * 179.97438 * 15 14 13 41 41 H 1.09003 * 109.46984 * 300.00329 * 15 14 13 42 42 H 1.08995 * 109.47823 * 59.99803 * 16 14 13 43 43 H 1.09006 * 109.47366 * 180.02562 * 16 14 13 44 44 H 1.09003 * 109.47106 * 299.99463 * 16 14 13 45 45 H 0.97000 * 119.99748 * 179.97438 * 20 19 17 46 46 H 1.09009 * 110.03019 * 359.97438 * 25 2 1 47 47 H 1.09000 * 110.03798 * 121.42953 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 1.2372 5 6 3.3137 -1.5004 0.7197 6 6 2.8875 -1.9410 -0.7027 7 1 2.2772 -2.8428 -0.6559 8 6 4.1176 -2.1733 -1.5824 9 7 4.8705 -3.3231 -1.0751 10 6 5.9998 -3.7165 -1.6968 11 8 6.3939 -3.1169 -2.6784 12 7 6.6922 -4.7746 -1.2305 13 6 7.9200 -5.2018 -1.9058 14 6 8.5055 -6.4149 -1.1803 15 6 8.8247 -6.0381 0.2678 16 6 7.4895 -7.5588 -1.1975 17 6 9.7682 -6.8548 -1.8754 18 1 10.1183 -6.3222 -2.7473 19 6 10.4764 -7.9373 -1.3984 20 7 10.0498 -8.5863 -0.3370 21 14 12.0420 -8.4821 -2.2596 22 1 13.2051 -7.7750 -1.6664 23 1 12.2151 -9.9475 -2.0915 24 1 11.9500 -8.1573 -3.7057 25 6 2.0571 -0.7529 -1.2341 26 1 -0.3633 0.5247 0.8837 27 1 -0.3633 -1.0276 0.0126 28 1 -0.3634 0.5029 -0.8962 29 1 2.3298 -0.0527 2.0254 30 1 1.3134 -1.4636 1.5987 31 1 4.1711 -0.8287 0.6754 32 1 3.5326 -2.3672 1.3432 33 1 3.8000 -2.3701 -2.6064 34 1 4.7512 -1.2867 -1.5625 35 1 4.5558 -3.8017 -0.2923 36 1 6.3775 -5.2532 -0.4476 37 1 7.6926 -5.4700 -2.9376 38 1 8.6439 -4.3871 -1.8933 39 1 7.9112 -5.7201 0.7703 40 1 9.2414 -6.9024 0.7848 41 1 9.5485 -5.2232 0.2800 42 1 7.2620 -7.8273 -2.2291 43 1 7.9064 -8.4229 -0.6802 44 1 6.5759 -7.2409 -0.6949 45 1 10.5480 -9.3481 -0.0017 46 1 1.2228 -1.1188 -1.8328 47 1 2.6867 -0.0945 -1.8325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458732232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:52 Heat of formation + Delta-G solvation = -66.170777 kcal Electronic energy + Delta-G solvation = -22516.591983 eV Core-core repulsion = 19311.888487 eV Total energy + Delta-G solvation = -3204.703495 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.74631 -38.74608 -36.44443 -34.55373 -33.20402 -31.55050 -30.61887 -29.45499 -26.44321 -25.69161 -25.43659 -24.69979 -23.61197 -20.68390 -20.51517 -19.70389 -18.73444 -17.95364 -16.41371 -15.79665 -15.57780 -15.18663 -14.97746 -14.66695 -14.07149 -13.78405 -13.61503 -13.56402 -13.34328 -12.88435 -12.81007 -12.56604 -12.14419 -12.12039 -11.35649 -11.32810 -11.16855 -11.04379 -11.01388 -10.93344 -10.87689 -10.82750 -10.66560 -10.65086 -10.34833 -10.18224 -9.71925 -9.59577 -9.27067 -8.89529 -8.75893 -8.38453 -8.12734 -5.99609 -4.09314 3.17100 3.30228 3.37056 3.41832 3.71781 4.26177 4.32109 4.41260 4.42081 4.82415 4.86983 5.01626 5.12579 5.20168 5.23931 5.27168 5.35011 5.39532 5.50048 5.57947 5.65563 5.78247 5.81875 5.84205 5.88227 5.98954 6.15593 6.17539 6.26343 6.40935 6.54419 6.73363 6.84330 6.86181 6.95194 7.06782 7.15260 7.35909 7.47221 7.59192 7.72633 8.04309 8.15770 8.41629 8.55291 8.90760 9.11753 9.56293 11.01852 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045730 B = 0.002714 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.148622 B =10314.695256 C =10593.626534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.070 0.930 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.104 4.104 7 H 0.080 0.920 8 C 0.149 3.851 9 N -0.753 5.753 10 C 0.696 3.304 11 O -0.602 6.602 12 N -0.734 5.734 13 C 0.151 3.849 14 C 0.056 3.944 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.504 4.504 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.113 4.113 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.392 0.608 36 H 0.393 0.607 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.006 0.994 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.005 0.995 45 H 0.259 0.741 46 H 0.067 0.933 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.681 12.752 4.389 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.089 0.911 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.123 4.123 7 H 0.098 0.902 8 C 0.024 3.976 9 N -0.410 5.410 10 C 0.396 3.604 11 O -0.481 6.481 12 N -0.388 5.388 13 C 0.028 3.972 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.151 4.151 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.226 0.774 36 H 0.227 0.773 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.024 0.976 40 H 0.103 0.897 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.103 0.897 44 H 0.024 0.976 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.230 13.140 3.562 21.959 hybrid contribution 0.548 -0.771 0.301 0.993 sum -16.682 12.368 3.862 21.123 Atomic orbital electron populations 1.21892 0.95131 1.01753 1.01454 1.21743 0.95552 0.99476 0.94850 0.91107 1.22445 0.97349 0.98950 0.97077 1.22579 0.97805 1.00088 0.95340 1.22265 0.95868 0.98947 0.95239 0.90210 1.21142 0.91152 0.88300 0.96997 1.45115 1.26778 1.34987 1.34112 1.16090 0.80081 0.81267 0.82943 1.90877 1.70716 1.58252 1.28232 1.45500 1.28036 1.31558 1.33737 1.21565 0.82447 0.97613 0.95622 1.18360 0.94075 0.89352 0.92705 1.21818 0.97123 1.01368 0.98433 1.21820 0.95507 1.02234 0.99191 1.20995 1.07160 1.13421 1.12683 0.92415 1.24882 0.97569 0.96179 0.94953 1.69810 1.39035 1.20625 1.23085 0.86569 0.83551 0.77630 0.80106 1.20732 1.21304 1.19901 1.22222 0.99178 0.96337 0.97358 0.92881 0.92600 0.92785 0.91818 0.91551 0.91078 0.91481 0.92032 0.91897 0.77445 0.77268 0.93025 0.93035 0.97552 0.89676 0.95468 0.95458 0.89663 0.97562 0.93060 0.91417 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.84 37.16 0.33 -0.55 16 2 C -0.10 -0.67 3.50 -89.50 -0.31 -0.99 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.12 -0.85 6.36 -25.07 -0.16 -1.01 16 5 C -0.12 -0.97 6.01 -24.74 -0.15 -1.12 16 6 C -0.10 -0.88 2.93 -88.90 -0.26 -1.14 16 7 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 8 C 0.15 1.74 4.97 -4.04 -0.02 1.72 16 9 N -0.75 -10.06 5.40 -65.23 -0.35 -10.42 16 10 C 0.70 12.78 8.57 -86.92 -0.74 12.04 16 11 O -0.60 -13.52 16.34 5.29 0.09 -13.43 16 12 N -0.73 -13.53 4.96 -65.23 -0.32 -13.86 16 13 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 14 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 15 C -0.13 -2.96 8.08 37.15 0.30 -2.66 16 16 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 17 C -0.50 -13.35 8.01 -34.44 -0.28 -13.63 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.78 9.35 55.43 0.52 -23.26 16 21 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.11 -0.85 6.04 -25.55 -0.15 -1.01 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.34 8.13 -51.93 -0.42 -0.08 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.45 7.84 -51.93 -0.41 0.04 16 31 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.39 4.22 8.34 -40.82 -0.34 3.88 16 36 H 0.39 6.47 6.18 -40.82 -0.25 6.22 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 40 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 44 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 45 H 0.26 6.71 8.31 -40.82 -0.34 6.38 16 46 H 0.07 0.48 7.67 -51.92 -0.40 0.08 16 47 H 0.07 0.54 7.85 -51.93 -0.41 0.13 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -29.40 362.05 -9.57 -38.97 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -8.60 Total: 5.51 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -1.34 Total: -4.84 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.16 Total: -47.54 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.40 -9.57 -38.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458732232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.204 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds