Wall clock time and date at job start Tue Mar 31 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.43291 * 2 1 4 4 C 1.55238 * 110.58012 * 237.41750 * 2 1 3 5 5 C 1.54894 * 102.58338 * 203.33342 * 4 2 1 6 6 C 1.54266 * 104.31305 * 37.93170 * 5 4 2 7 7 H 1.09001 * 110.03084 * 95.60669 * 6 5 4 8 8 C 1.52999 * 110.03121 * 216.98718 * 6 5 4 9 9 N 1.46502 * 109.47011 * 293.54451 * 8 6 5 10 10 C 1.34774 * 119.99687 * 179.97438 * 9 8 6 11 11 O 1.21588 * 120.00570 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00121 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00411 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47166 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47501 * 300.00232 * 14 13 12 16 16 C 1.53008 * 109.47175 * 60.00282 * 14 13 12 17 17 C 1.50699 * 109.47117 * 179.97438 * 14 13 12 18 18 H 1.08003 * 120.00073 * 0.02562 * 17 14 13 19 19 C 1.37878 * 120.00078 * 179.97438 * 17 14 13 20 20 N 1.31506 * 120.00174 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00138 * 180.02562 * 19 17 14 22 22 H 1.48508 * 109.47002 * 59.99947 * 21 19 17 23 23 H 1.48494 * 109.47576 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47166 * 300.00565 * 21 19 17 25 25 C 1.53869 * 106.60031 * 336.32486 * 6 5 4 26 26 H 1.09002 * 109.47015 * 297.45451 * 1 2 3 27 27 H 1.08997 * 109.47536 * 57.46280 * 1 2 3 28 28 H 1.09001 * 109.46911 * 177.46124 * 1 2 3 29 29 H 1.08996 * 110.89448 * 85.04906 * 4 2 1 30 30 H 1.08993 * 110.76342 * 321.56571 * 4 2 1 31 31 H 1.09002 * 110.48891 * 279.18596 * 5 4 2 32 32 H 1.08998 * 110.48494 * 156.67683 * 5 4 2 33 33 H 1.09000 * 109.47350 * 53.54721 * 8 6 5 34 34 H 1.09003 * 109.47056 * 173.54811 * 8 6 5 35 35 H 0.96995 * 120.00216 * 0.02562 * 9 8 6 36 36 H 0.97003 * 120.00157 * 0.02562 * 12 10 9 37 37 H 1.08997 * 109.47123 * 300.00536 * 13 12 10 38 38 H 1.08998 * 109.47201 * 60.00276 * 13 12 10 39 39 H 1.08996 * 109.47083 * 60.00128 * 15 14 13 40 40 H 1.08997 * 109.47599 * 180.02562 * 15 14 13 41 41 H 1.08998 * 109.46860 * 299.99805 * 15 14 13 42 42 H 1.08997 * 109.46957 * 59.99645 * 16 14 13 43 43 H 1.08997 * 109.46872 * 179.97438 * 16 14 13 44 44 H 1.08998 * 109.46847 * 300.00153 * 16 14 13 45 45 H 0.97003 * 120.00220 * 180.02562 * 20 19 17 46 46 H 1.08999 * 110.04012 * 119.28327 * 25 6 5 47 47 H 1.09003 * 110.03070 * 240.71854 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0757 -0.7826 -1.2246 5 6 3.4938 -1.1945 -0.7572 6 6 3.3186 -1.5367 0.7368 7 1 3.1732 -2.6100 0.8594 8 6 4.5474 -1.0812 1.5264 9 7 5.7107 -1.8729 1.1190 10 6 6.9125 -1.6450 1.6849 11 8 7.0311 -0.7828 2.5339 12 7 7.9829 -2.3729 1.3098 13 6 9.2894 -2.1249 1.9245 14 6 10.3245 -3.0788 1.3249 15 6 9.9012 -4.5245 1.5925 16 6 10.4186 -2.8460 -0.1844 17 6 11.6685 -2.8232 1.9568 18 1 11.7738 -2.0573 2.7110 19 6 12.7636 -3.5679 1.5729 20 7 12.6353 -4.5008 0.6550 21 14 14.4295 -3.2516 2.3567 22 1 14.3380 -3.4770 3.8217 23 1 15.4342 -4.1773 1.7748 24 1 14.8406 -1.8485 2.0966 25 6 2.0700 -0.7773 1.2182 26 1 -0.3633 0.4738 0.9119 27 1 -0.3634 0.5527 -0.8663 28 1 -0.3633 -1.0267 -0.0455 29 1 2.1301 -0.1404 -2.1036 30 1 1.4642 -1.6624 -1.4247 31 1 4.1915 -0.3660 -0.8795 32 1 3.8393 -2.0677 -1.3106 33 1 4.7373 -0.0266 1.3264 34 1 4.3672 -1.2222 2.5922 35 1 5.6163 -2.5605 0.4414 36 1 7.8885 -3.0606 0.6322 37 1 9.5912 -1.0951 1.7335 38 1 9.2223 -2.2904 2.9998 39 1 8.9292 -4.7090 1.1351 40 1 10.6388 -5.2040 1.1657 41 1 9.8342 -4.6903 2.6677 42 1 10.7202 -1.8160 -0.3750 43 1 11.1564 -3.5252 -0.6114 44 1 9.4466 -3.0304 -0.6418 45 1 13.4057 -5.0249 0.3852 46 1 1.3185 -1.4819 1.5745 47 1 2.3390 -0.0833 2.0145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458732234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:55 Heat of formation + Delta-G solvation = -66.004871 kcal Electronic energy + Delta-G solvation = -22524.535274 eV Core-core repulsion = 19319.838973 eV Total energy + Delta-G solvation = -3204.696301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.76049 -38.72153 -36.43686 -34.52699 -33.20295 -31.57201 -30.62745 -29.45071 -26.43080 -25.69157 -25.43024 -24.68723 -23.60567 -20.68493 -20.48753 -19.74902 -18.73526 -17.93191 -16.43418 -15.79156 -15.61008 -15.16718 -14.92428 -14.67064 -14.04505 -13.83979 -13.66169 -13.53200 -13.21414 -12.96543 -12.80685 -12.55344 -12.14336 -12.05754 -11.38722 -11.34576 -11.16383 -11.13303 -11.01521 -10.89587 -10.81505 -10.80323 -10.70280 -10.63836 -10.34575 -10.18284 -9.72046 -9.59375 -9.27014 -8.89675 -8.76550 -8.38064 -8.12753 -5.99352 -4.09161 3.17530 3.32201 3.36188 3.40600 3.71702 4.25168 4.33566 4.41084 4.42385 4.82631 4.85692 5.01586 5.15235 5.20293 5.27286 5.28887 5.35711 5.38259 5.51641 5.56496 5.65036 5.77464 5.82713 5.85439 5.87341 6.00625 6.15061 6.18555 6.26378 6.40947 6.54504 6.73389 6.84328 6.86293 6.95259 7.06832 7.15259 7.35948 7.47211 7.59201 7.72577 8.04462 8.15770 8.41741 8.55282 8.90615 9.11692 9.56340 11.02055 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046754 B = 0.002711 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.734547 B =10326.363299 C =10580.816625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.104 4.104 7 H 0.077 0.923 8 C 0.148 3.852 9 N -0.754 5.754 10 C 0.696 3.304 11 O -0.602 6.602 12 N -0.734 5.734 13 C 0.151 3.849 14 C 0.056 3.944 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.505 4.505 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.113 4.113 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.392 0.608 36 H 0.393 0.607 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.006 0.994 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.005 0.995 45 H 0.260 0.740 46 H 0.067 0.933 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.458 3.708 -4.497 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.092 0.908 4 C -0.158 4.158 5 C -0.160 4.160 6 C -0.123 4.123 7 H 0.096 0.904 8 C 0.024 3.976 9 N -0.410 5.410 10 C 0.396 3.604 11 O -0.481 6.481 12 N -0.388 5.388 13 C 0.028 3.972 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.151 4.151 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.226 0.774 36 H 0.227 0.773 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.024 0.976 40 H 0.103 0.897 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.103 0.897 44 H 0.024 0.976 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.191 4.375 -3.779 21.966 hybrid contribution 0.850 -0.518 -0.209 1.017 sum -20.341 3.858 -3.988 21.084 Atomic orbital electron populations 1.21803 0.95115 1.01706 1.01542 1.22045 0.95319 0.99450 0.94911 0.90755 1.22625 0.96101 0.99683 0.97344 1.22465 0.97213 1.01551 0.94733 1.22022 0.94334 1.00608 0.95339 0.90448 1.21247 0.83014 0.95112 0.98264 1.45129 1.07974 1.42114 1.45810 1.16093 0.80393 0.82188 0.81716 1.90877 1.84782 1.36452 1.35972 1.45503 1.08894 1.39650 1.44785 1.21563 0.79500 0.99803 0.96380 1.18356 0.92266 0.90970 0.92873 1.21816 0.97752 1.00405 0.98775 1.21819 0.98439 1.00557 0.97928 1.20956 0.92276 1.19037 1.22081 0.92472 1.24879 0.98810 0.94921 0.94940 1.69794 1.30203 1.22125 1.30428 0.86630 0.83514 0.78073 0.79609 1.20285 1.21367 1.20288 1.22193 0.96138 0.98908 0.97841 0.92727 0.92807 0.92679 0.91677 0.91506 0.91104 0.91609 0.91899 0.92060 0.77441 0.77268 0.93038 0.93032 0.97550 0.89667 0.95473 0.95471 0.89668 0.97555 0.92996 0.91420 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.13 37.16 0.34 -0.54 16 2 C -0.10 -0.70 3.46 -88.77 -0.31 -1.01 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.12 -0.85 6.36 -24.55 -0.16 -1.01 16 5 C -0.12 -0.99 6.00 -25.07 -0.15 -1.14 16 6 C -0.10 -0.88 2.98 -89.51 -0.27 -1.15 16 7 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 8 C 0.15 1.74 4.73 -4.04 -0.02 1.72 16 9 N -0.75 -10.10 5.39 -65.22 -0.35 -10.45 16 10 C 0.70 12.80 8.57 -86.92 -0.74 12.06 16 11 O -0.60 -13.54 16.34 5.29 0.09 -13.45 16 12 N -0.73 -13.55 4.96 -65.23 -0.32 -13.88 16 13 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 14 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 15 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 16 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 17 C -0.50 -13.39 8.01 -34.44 -0.28 -13.66 16 18 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.78 9.35 55.43 0.52 -23.27 16 21 Si 0.89 20.91 29.54 -169.99 -5.02 15.88 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.11 -0.85 6.03 -25.62 -0.15 -1.01 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.32 8.13 -51.93 -0.42 -0.10 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 31 H 0.07 0.66 7.78 -51.93 -0.40 0.25 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.81 8.04 -51.93 -0.42 0.39 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.39 4.24 8.32 -40.82 -0.34 3.90 16 36 H 0.39 6.48 6.18 -40.82 -0.25 6.23 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 40 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 44 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 45 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 46 H 0.07 0.47 7.84 -51.93 -0.41 0.06 16 47 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -29.38 361.97 -9.55 -38.93 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -8.59 Total: 5.64 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.32 Total: -4.87 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.16 Total: -47.59 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.38 -9.55 -38.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458732234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.072 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds