Wall clock time and date at job start Tue Mar 31 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.43291 * 2 1 4 4 C 1.55238 * 110.58012 * 237.41750 * 2 1 3 5 5 C 1.54894 * 102.58338 * 203.33342 * 4 2 1 6 6 C 1.54266 * 104.31305 * 37.93170 * 5 4 2 7 7 H 1.09001 * 110.03084 * 95.60669 * 6 5 4 8 8 C 1.52999 * 110.03121 * 216.98718 * 6 5 4 9 9 N 1.46502 * 109.47011 * 293.54451 * 8 6 5 10 10 C 1.34774 * 119.99687 * 179.97438 * 9 8 6 11 11 O 1.21588 * 120.00570 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00121 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00411 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47166 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47501 * 300.00232 * 14 13 12 16 16 C 1.53008 * 109.47175 * 60.00282 * 14 13 12 17 17 C 1.50699 * 109.47117 * 179.97438 * 14 13 12 18 18 H 1.08003 * 120.00073 * 0.02562 * 17 14 13 19 19 C 1.37878 * 120.00078 * 179.97438 * 17 14 13 20 20 N 1.31506 * 120.00174 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00138 * 180.02562 * 19 17 14 22 22 H 1.48508 * 109.47002 * 59.99947 * 21 19 17 23 23 H 1.48494 * 109.47576 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47166 * 300.00565 * 21 19 17 25 25 C 1.53869 * 106.60031 * 336.32486 * 6 5 4 26 26 H 1.09002 * 109.47015 * 297.45451 * 1 2 3 27 27 H 1.08997 * 109.47536 * 57.46280 * 1 2 3 28 28 H 1.09001 * 109.46911 * 177.46124 * 1 2 3 29 29 H 1.08996 * 110.89448 * 85.04906 * 4 2 1 30 30 H 1.08993 * 110.76342 * 321.56571 * 4 2 1 31 31 H 1.09002 * 110.48891 * 279.18596 * 5 4 2 32 32 H 1.08998 * 110.48494 * 156.67683 * 5 4 2 33 33 H 1.09000 * 109.47350 * 53.54721 * 8 6 5 34 34 H 1.09003 * 109.47056 * 173.54811 * 8 6 5 35 35 H 0.96995 * 120.00216 * 0.02562 * 9 8 6 36 36 H 0.97003 * 120.00157 * 0.02562 * 12 10 9 37 37 H 1.08997 * 109.47123 * 300.00536 * 13 12 10 38 38 H 1.08998 * 109.47201 * 60.00276 * 13 12 10 39 39 H 1.08996 * 109.47083 * 60.00128 * 15 14 13 40 40 H 1.08997 * 109.47599 * 180.02562 * 15 14 13 41 41 H 1.08998 * 109.46860 * 299.99805 * 15 14 13 42 42 H 1.08997 * 109.46957 * 59.99645 * 16 14 13 43 43 H 1.08997 * 109.46872 * 179.97438 * 16 14 13 44 44 H 1.08998 * 109.46847 * 300.00153 * 16 14 13 45 45 H 0.97003 * 120.00220 * 180.02562 * 20 19 17 46 46 H 1.08999 * 110.04012 * 119.28327 * 25 6 5 47 47 H 1.09003 * 110.03070 * 240.71854 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0757 -0.7826 -1.2246 5 6 3.4938 -1.1945 -0.7572 6 6 3.3186 -1.5367 0.7368 7 1 3.1732 -2.6100 0.8594 8 6 4.5474 -1.0812 1.5264 9 7 5.7107 -1.8729 1.1190 10 6 6.9125 -1.6450 1.6849 11 8 7.0311 -0.7828 2.5339 12 7 7.9829 -2.3729 1.3098 13 6 9.2894 -2.1249 1.9245 14 6 10.3245 -3.0788 1.3249 15 6 9.9012 -4.5245 1.5925 16 6 10.4186 -2.8460 -0.1844 17 6 11.6685 -2.8232 1.9568 18 1 11.7738 -2.0573 2.7110 19 6 12.7636 -3.5679 1.5729 20 7 12.6353 -4.5008 0.6550 21 14 14.4295 -3.2516 2.3567 22 1 14.3380 -3.4770 3.8217 23 1 15.4342 -4.1773 1.7748 24 1 14.8406 -1.8485 2.0966 25 6 2.0700 -0.7773 1.2182 26 1 -0.3633 0.4738 0.9119 27 1 -0.3634 0.5527 -0.8663 28 1 -0.3633 -1.0267 -0.0455 29 1 2.1301 -0.1404 -2.1036 30 1 1.4642 -1.6624 -1.4247 31 1 4.1915 -0.3660 -0.8795 32 1 3.8393 -2.0677 -1.3106 33 1 4.7373 -0.0266 1.3264 34 1 4.3672 -1.2222 2.5922 35 1 5.6163 -2.5605 0.4414 36 1 7.8885 -3.0606 0.6322 37 1 9.5912 -1.0951 1.7335 38 1 9.2223 -2.2904 2.9998 39 1 8.9292 -4.7090 1.1351 40 1 10.6388 -5.2040 1.1657 41 1 9.8342 -4.6903 2.6677 42 1 10.7202 -1.8160 -0.3750 43 1 11.1564 -3.5252 -0.6114 44 1 9.4466 -3.0304 -0.6418 45 1 13.4057 -5.0249 0.3852 46 1 1.3185 -1.4819 1.5745 47 1 2.3390 -0.0833 2.0145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458732234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:54 Heat of formation + Delta-G solvation = -82.787458 kcal Electronic energy + Delta-G solvation = -22525.263022 eV Core-core repulsion = 19319.838973 eV Total energy + Delta-G solvation = -3205.424049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10196 -39.58174 -38.17848 -35.69595 -34.96666 -32.88657 -31.94937 -30.16021 -27.62335 -27.54834 -27.19799 -26.04472 -24.54299 -22.03080 -21.21607 -20.58527 -20.50179 -19.29706 -17.75019 -17.50228 -16.71719 -16.60349 -16.24630 -15.92738 -15.31811 -15.07540 -14.88838 -14.65325 -14.43456 -14.22175 -13.99041 -13.76406 -13.51328 -13.17215 -13.07782 -12.71134 -12.63998 -12.61407 -12.23608 -12.12794 -12.04650 -11.76334 -11.69607 -11.51794 -11.46901 -11.40162 -11.33538 -11.25795 -11.10226 -10.69832 -10.39665 -10.27213 -9.62859 -8.01112 -6.16638 1.45077 1.45902 1.52638 1.84988 2.22652 2.47322 3.22353 3.43055 3.63092 3.71238 3.80784 4.21720 4.34168 4.43956 4.49453 4.54740 4.60869 4.66044 4.72064 4.74343 4.76755 4.82213 4.94416 4.99306 5.02172 5.07574 5.12503 5.13334 5.18060 5.21624 5.21970 5.36904 5.38310 5.39880 5.48923 5.58904 5.61895 5.65462 5.68323 5.68699 6.10879 6.16753 6.23384 6.45127 6.87275 7.19532 7.50808 7.66369 8.97689 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046754 B = 0.002711 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.734547 B =10326.363299 C =10580.816625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.066 0.934 4 C -0.116 4.116 5 C -0.123 4.123 6 C -0.094 4.094 7 H 0.089 0.911 8 C 0.148 3.852 9 N -0.732 5.732 10 C 0.694 3.306 11 O -0.645 6.645 12 N -0.726 5.726 13 C 0.168 3.832 14 C 0.052 3.948 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.529 4.529 18 H 0.044 0.956 19 C 0.028 3.972 20 N -0.899 5.899 21 Si 0.945 3.055 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.277 1.277 25 C -0.112 4.112 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.409 0.591 36 H 0.405 0.595 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.017 0.983 42 H 0.017 0.983 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.260 0.740 46 H 0.078 0.922 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.059 3.048 -5.404 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.085 0.915 4 C -0.154 4.154 5 C -0.160 4.160 6 C -0.112 4.112 7 H 0.108 0.892 8 C 0.024 3.976 9 N -0.388 5.388 10 C 0.394 3.606 11 O -0.528 6.528 12 N -0.381 5.381 13 C 0.043 3.957 14 C 0.052 3.948 15 C -0.178 4.178 16 C -0.178 4.178 17 C -0.568 4.568 18 H 0.062 0.938 19 C -0.172 4.172 20 N -0.538 5.538 21 Si 0.772 3.228 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.203 1.203 25 C -0.150 4.150 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.245 0.755 36 H 0.242 0.758 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.836 3.685 -4.730 23.610 hybrid contribution 1.299 -0.287 0.072 1.332 sum -21.537 3.398 -4.657 22.295 Atomic orbital electron populations 1.21782 0.94202 1.02139 1.01815 1.22047 0.96084 0.98981 0.94700 0.91522 1.22613 0.95413 1.00043 0.97306 1.22463 0.97688 1.01436 0.94432 1.21971 0.92872 1.01296 0.95106 0.89223 1.21371 0.83510 0.94339 0.98382 1.44971 1.06666 1.42076 1.45113 1.16251 0.81389 0.81562 0.81432 1.90851 1.85600 1.38306 1.38022 1.45194 1.07866 1.40141 1.44948 1.21107 0.80803 0.98338 0.95426 1.18353 0.91524 0.91724 0.93248 1.21660 0.98704 0.99171 0.98219 1.21663 0.99470 0.99293 0.97325 1.21244 0.94180 1.19030 1.22332 0.93791 1.25449 1.01397 0.94886 0.95447 1.69895 1.30773 1.22295 1.30791 0.85819 0.80364 0.77855 0.78771 1.20283 1.20756 1.20302 1.22205 0.95905 0.99006 0.97926 0.92626 0.92423 0.92147 0.91426 0.90589 0.92533 0.90658 0.93220 0.93034 0.75451 0.75799 0.94822 0.94788 0.94408 0.91845 0.96401 0.96417 0.91842 0.94418 0.93008 0.90321 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.13 71.98 0.66 -0.79 16 2 C -0.10 -1.24 3.46 -9.60 -0.03 -1.27 16 3 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 4 C -0.12 -1.38 6.36 32.01 0.20 -1.18 16 5 C -0.12 -1.72 6.00 31.67 0.19 -1.53 16 6 C -0.09 -1.39 2.98 -10.07 -0.03 -1.42 16 7 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 8 C 0.15 3.32 4.73 86.38 0.41 3.73 16 9 N -0.73 -18.38 5.39 -478.53 -2.58 -20.95 16 10 C 0.69 24.91 8.57 179.06 1.53 26.45 16 11 O -0.65 -29.21 16.34 -3.99 -0.07 -29.28 16 12 N -0.73 -25.90 4.96 -478.55 -2.37 -28.28 16 13 C 0.17 7.39 4.50 86.38 0.39 7.78 16 14 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 15 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 16 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 17 C -0.53 -28.34 8.01 25.60 0.21 -28.13 16 18 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 19 C 0.03 1.48 5.15 84.66 0.44 1.92 16 20 N -0.90 -48.07 9.35 21.45 0.20 -47.87 16 21 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 C -0.11 -1.50 6.03 31.32 0.19 -1.31 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.56 8.13 -2.39 -0.02 0.54 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.79 8.05 -2.39 -0.02 0.77 16 31 H 0.06 0.97 7.78 -2.39 -0.02 0.95 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 1.27 8.04 -2.39 -0.02 1.25 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.41 7.68 8.32 -92.71 -0.77 6.91 16 36 H 0.41 12.32 6.18 -92.71 -0.57 11.75 16 37 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.04 1.40 6.86 -2.39 -0.02 1.39 16 40 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 44 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 45 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 46 H 0.08 0.90 7.84 -2.39 -0.02 0.88 16 47 H 0.06 0.92 7.67 -2.39 -0.02 0.90 16 Total: -1.00 -63.07 361.97 2.09 -60.98 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -0.41 Total: 23.34 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.28 Total: -2.88 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -4.75 Total: -97.10 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.07 Total: -29.28 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -63.07 2.09 -60.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458732234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.805 kcal (2) G-P(sol) polarization free energy of solvation -63.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds