Wall clock time and date at job start Tue Mar 31 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.81565 * 2 1 4 4 C 1.54891 * 110.75595 * 236.66315 * 2 1 3 5 5 C 1.54266 * 104.19266 * 203.74535 * 4 2 1 6 6 C 1.53876 * 106.60231 * 23.60582 * 5 4 2 7 7 H 1.09000 * 110.03434 * 240.66577 * 6 5 4 8 8 N 1.46506 * 110.02863 * 119.28535 * 6 5 4 9 9 C 1.46498 * 120.00239 * 301.17767 * 8 6 5 10 10 C 1.34777 * 119.99873 * 121.45962 * 8 6 5 11 11 O 1.21592 * 119.99797 * 359.97438 * 10 8 6 12 12 N 1.34774 * 119.99902 * 179.97438 * 10 8 6 13 13 C 1.46499 * 119.99966 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47337 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46471 * 299.99670 * 14 13 12 16 16 C 1.53000 * 109.47123 * 59.99635 * 14 13 12 17 17 C 1.50696 * 109.46997 * 180.02562 * 14 13 12 18 18 H 1.07999 * 120.00319 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99717 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00035 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99853 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47085 * 89.99852 * 21 19 17 23 23 H 1.48497 * 109.46789 * 209.99862 * 21 19 17 24 24 H 1.48500 * 109.46897 * 329.99829 * 21 19 17 25 25 C 1.54263 * 106.59732 * 0.02562 * 6 5 4 26 26 H 1.08997 * 109.47009 * 181.88635 * 1 2 3 27 27 H 1.09003 * 109.47271 * 301.88624 * 1 2 3 28 28 H 1.08998 * 109.46904 * 61.88376 * 1 2 3 29 29 H 1.08993 * 110.48741 * 85.06867 * 4 2 1 30 30 H 1.08997 * 110.48594 * 322.41445 * 4 2 1 31 31 H 1.09000 * 110.03076 * 264.32531 * 5 4 2 32 32 H 1.08997 * 110.03369 * 142.89429 * 5 4 2 33 33 H 1.08998 * 109.46661 * 89.99886 * 9 8 6 34 34 H 1.08993 * 109.47575 * 210.00600 * 9 8 6 35 35 H 1.09001 * 109.46870 * 330.00556 * 9 8 6 36 36 H 0.96999 * 120.00050 * 0.02562 * 12 10 8 37 37 H 1.09005 * 109.47136 * 300.00071 * 13 12 10 38 38 H 1.08996 * 109.47174 * 59.99413 * 13 12 10 39 39 H 1.09005 * 109.46942 * 60.00455 * 15 14 13 40 40 H 1.08998 * 109.46776 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.47388 * 299.99753 * 15 14 13 42 42 H 1.08997 * 109.46749 * 60.00474 * 16 14 13 43 43 H 1.08996 * 109.46383 * 180.02562 * 16 14 13 44 44 H 1.08996 * 109.47024 * 300.00331 * 16 14 13 45 45 H 0.97000 * 119.99712 * 179.97438 * 20 19 17 46 46 H 1.09007 * 110.48748 * 95.06333 * 25 6 5 47 47 H 1.09000 * 110.48857 * 217.70594 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0188 0.0000 4 6 2.0789 -0.7960 -1.2101 5 6 3.4931 -1.2269 -0.7693 6 6 3.4931 -1.2267 0.7695 7 1 4.2332 -0.5190 1.1428 8 7 3.7872 -2.5714 1.2714 9 6 2.9220 -3.6954 0.9053 10 6 4.8506 -2.7732 2.0745 11 8 5.5660 -1.8394 2.3821 12 7 5.1209 -4.0101 2.5366 13 6 6.2770 -4.2296 3.4091 14 6 6.3567 -5.7100 3.7874 15 6 5.0784 -6.1179 4.5225 16 6 6.5072 -6.5530 2.5195 17 6 7.5457 -5.9356 4.6854 18 1 8.1812 -5.1062 4.9586 19 6 7.8222 -7.2010 5.1583 20 7 7.0480 -8.2108 4.8260 21 14 9.2964 -7.4808 6.2709 22 1 8.8865 -7.3105 7.6880 23 1 9.8155 -8.8572 6.0678 24 1 10.3590 -6.4972 5.9413 25 6 2.0787 -0.7964 1.2101 26 1 -0.3633 -1.0271 0.0338 27 1 -0.3634 0.5429 0.8726 28 1 -0.3633 0.4843 -0.9064 29 1 2.1320 -0.1593 -2.0931 30 1 1.4575 -1.6699 -1.4054 31 1 4.2326 -0.5185 -1.1426 32 1 3.7119 -2.2272 -1.1426 33 1 3.2915 -4.1547 -0.0116 34 1 2.9251 -4.4328 1.7079 35 1 1.9056 -3.3350 0.7470 36 1 4.5503 -4.7551 2.2908 37 1 7.1879 -3.9393 2.8853 38 1 6.1701 -3.6286 4.3121 39 1 4.2181 -5.9546 3.8732 40 1 5.1349 -7.1726 4.7916 41 1 4.9712 -5.5173 5.4258 42 1 7.4179 -6.2623 1.9960 43 1 6.5635 -7.6076 2.7892 44 1 5.6470 -6.3897 1.8704 45 1 7.2428 -9.1011 5.1584 46 1 1.4575 -1.6706 1.4055 47 1 2.1315 -0.1597 2.0932 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459249033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:08 Heat of formation + Delta-G solvation = -45.851769 kcal Electronic energy + Delta-G solvation = -23327.000098 eV Core-core repulsion = 20123.177701 eV Total energy + Delta-G solvation = -3203.822397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.16815 -38.31706 -36.32818 -34.68878 -33.19568 -31.13226 -30.38964 -28.58712 -26.78751 -25.70306 -25.65278 -25.14669 -24.19362 -20.88224 -20.21289 -19.06386 -18.81766 -17.90053 -16.27027 -15.83905 -15.75012 -15.25622 -14.70160 -14.42012 -13.94697 -13.85650 -13.42786 -13.25153 -13.21333 -12.84602 -12.61551 -12.37769 -12.33881 -12.02807 -11.68859 -11.54146 -11.34002 -11.17256 -11.12155 -10.87691 -10.84167 -10.68545 -10.67513 -10.58298 -10.35849 -10.17937 -9.65107 -9.60536 -9.26923 -8.76738 -8.59722 -8.37930 -8.07997 -6.00196 -4.09879 3.00722 3.29879 3.36710 3.41312 3.64528 4.32111 4.40304 4.44631 4.56634 4.67609 5.08643 5.11562 5.19262 5.26619 5.33172 5.35115 5.35768 5.43634 5.48760 5.59069 5.67418 5.71179 5.79082 5.90207 5.93233 6.10521 6.15954 6.21329 6.27196 6.40309 6.53284 6.72077 6.84663 6.84677 6.96966 7.05860 7.14641 7.32341 7.42872 7.58257 7.71902 8.03373 8.14791 8.40459 8.48018 8.90091 9.08821 9.55735 11.01306 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041776 B = 0.003268 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.081541 B = 8564.984176 C = 8713.141906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.077 0.923 4 C -0.118 4.118 5 C -0.136 4.136 6 C 0.154 3.846 7 H 0.103 0.897 8 N -0.632 5.632 9 C 0.079 3.921 10 C 0.699 3.301 11 O -0.600 6.600 12 N -0.733 5.733 13 C 0.149 3.851 14 C 0.056 3.944 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.132 4.132 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.394 0.606 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.004 0.996 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.004 0.996 45 H 0.259 0.741 46 H 0.073 0.927 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.371 10.395 -11.159 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.155 4.155 5 C -0.175 4.175 6 C 0.050 3.950 7 H 0.121 0.879 8 N -0.370 5.370 9 C -0.065 4.065 10 C 0.400 3.600 11 O -0.479 6.479 12 N -0.388 5.388 13 C 0.026 3.974 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.170 4.170 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.230 0.770 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.023 0.977 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.103 0.897 44 H 0.023 0.977 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.812 10.836 -10.870 19.993 hybrid contribution 0.473 -0.655 0.471 0.935 sum -12.339 10.181 -10.400 19.080 Atomic orbital electron populations 1.21745 0.94932 1.01782 1.01514 1.22080 0.95383 0.99262 0.94899 0.90483 1.22410 0.95965 0.99620 0.97530 1.22539 0.97222 1.02236 0.95514 1.21525 0.97039 0.83675 0.92772 0.87932 1.47097 1.28740 1.08593 1.52562 1.21633 0.94992 0.89316 1.00536 1.16038 0.80882 0.84130 0.78918 1.90857 1.51286 1.41952 1.63814 1.45653 1.32599 1.07474 1.53085 1.21579 0.85125 0.99343 0.91349 1.18358 0.94996 0.87585 0.93522 1.21818 0.94902 1.04262 0.97694 1.21811 0.96458 1.04409 0.96002 1.20998 1.10378 0.94063 1.28878 0.92401 1.24881 0.96490 0.96005 0.96154 1.69807 1.37858 0.99934 1.44950 0.86570 0.82984 0.77371 0.80941 1.20728 1.21292 1.19892 1.22857 0.96060 1.00113 0.97990 0.92668 0.92707 0.92752 0.91747 0.91613 0.91262 0.91085 0.92953 0.91405 0.91020 0.76982 0.93018 0.93026 0.97714 0.89630 0.95455 0.95447 0.89651 0.97656 0.93048 0.90848 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.27 37.16 0.34 -0.64 16 2 C -0.10 -0.79 3.50 -88.61 -0.31 -1.10 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -0.94 6.28 -25.07 -0.16 -1.10 16 5 C -0.14 -1.39 6.29 -25.61 -0.16 -1.55 16 6 C 0.15 1.92 3.31 -66.81 -0.22 1.70 16 7 H 0.10 1.53 6.94 -51.93 -0.36 1.17 16 8 N -0.63 -9.03 2.76 -178.38 -0.49 -9.52 16 9 C 0.08 0.86 9.15 59.85 0.55 1.41 16 10 C 0.70 13.18 8.28 -86.92 -0.72 12.46 16 11 O -0.60 -13.53 15.69 5.28 0.08 -13.45 16 12 N -0.73 -13.85 4.82 -65.22 -0.31 -14.17 16 13 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 14 C 0.06 1.32 0.50 -155.66 -0.08 1.25 16 15 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 16 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 17 C -0.50 -13.39 8.01 -34.44 -0.28 -13.67 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.76 9.35 55.43 0.52 -23.24 16 21 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.13 -1.33 5.79 -25.06 -0.15 -1.48 16 26 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.50 8.05 -51.93 -0.42 0.08 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.76 7.18 -51.93 -0.37 0.38 16 33 H 0.05 0.53 7.88 -51.93 -0.41 0.12 16 34 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 35 H 0.07 0.63 6.33 -51.93 -0.33 0.30 16 36 H 0.39 6.73 3.89 -40.82 -0.16 6.58 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 40 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 44 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 45 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 46 H 0.07 0.72 6.09 -51.93 -0.32 0.41 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -29.19 353.84 -8.81 -38.00 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -8.23 Total: 4.24 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.69 Total: -3.07 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.29 Total: -46.93 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.19 -8.81 -38.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459249033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.851 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds