Wall clock time and date at job start Tue Mar 31 2020 06:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.53756 * 2 1 4 4 C 1.54267 * 110.48834 * 122.60663 * 2 1 3 5 5 C 1.53879 * 106.59429 * 142.29019 * 4 2 1 6 6 C 1.54257 * 106.60256 * 0.02562 * 5 4 2 7 7 H 1.09000 * 110.49037 * 95.19698 * 6 5 4 8 8 N 1.46499 * 110.48757 * 217.71217 * 6 5 4 9 9 C 1.46496 * 119.99934 * 58.54758 * 8 6 5 10 10 C 1.34777 * 120.00065 * 238.54365 * 8 6 5 11 11 O 1.21593 * 119.99923 * 0.02562 * 10 8 6 12 12 N 1.34777 * 120.00128 * 180.02562 * 10 8 6 13 13 C 1.46498 * 119.99828 * 180.27942 * 12 10 8 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 C 1.53010 * 109.47146 * 299.99645 * 14 13 12 16 16 C 1.53000 * 109.47166 * 59.99736 * 14 13 12 17 17 C 1.50697 * 109.47491 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99965 * 359.97438 * 17 14 13 19 19 C 1.37877 * 120.00490 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99545 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00173 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47330 * 89.99925 * 21 19 17 23 23 H 1.48495 * 109.47202 * 209.99886 * 21 19 17 24 24 H 1.48496 * 109.47402 * 329.99928 * 21 19 17 25 25 C 1.54892 * 110.48753 * 237.38738 * 2 1 3 26 26 H 1.09006 * 109.47158 * 298.83948 * 1 2 3 27 27 H 1.08990 * 109.47784 * 58.84484 * 1 2 3 28 28 H 1.09008 * 109.46842 * 178.84871 * 1 2 3 29 29 H 1.08999 * 110.02884 * 23.00942 * 4 2 1 30 30 H 1.08991 * 110.03540 * 261.57669 * 4 2 1 31 31 H 1.09001 * 110.03001 * 240.71439 * 5 4 2 32 32 H 1.08998 * 110.03049 * 119.29259 * 5 4 2 33 33 H 1.09001 * 109.47017 * 269.99778 * 9 8 6 34 34 H 1.08999 * 109.47701 * 29.99507 * 9 8 6 35 35 H 1.09005 * 109.47188 * 150.00374 * 9 8 6 36 36 H 0.97001 * 119.99727 * 359.97438 * 12 10 8 37 37 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 38 38 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 39 39 H 1.09003 * 109.46863 * 59.99870 * 15 14 13 40 40 H 1.09001 * 109.47172 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.46753 * 300.00454 * 15 14 13 42 42 H 1.08990 * 109.47258 * 60.00092 * 16 14 13 43 43 H 1.09001 * 109.46739 * 180.02562 * 16 14 13 44 44 H 1.08999 * 109.47407 * 299.99599 * 16 14 13 45 45 H 0.97004 * 119.99855 * 180.02562 * 20 19 17 46 46 H 1.08998 * 110.75337 * 85.05880 * 25 2 1 47 47 H 1.08998 * 110.75308 * 321.68857 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0699 -0.7787 1.2173 5 6 3.3166 -1.5404 0.7340 6 6 3.4911 -1.1974 -0.7598 7 1 4.1920 -0.3717 -0.8823 8 7 3.9493 -2.3722 -1.5054 9 6 3.1478 -3.5985 -1.5049 10 6 5.1081 -2.3249 -2.1920 11 8 5.7735 -1.3072 -2.1921 12 7 5.5294 -3.4055 -2.8784 13 6 6.7921 -3.3560 -3.6197 14 6 7.0379 -4.7046 -4.2990 15 6 7.1124 -5.8043 -3.2377 16 6 5.8905 -5.0055 -5.2655 17 6 8.3364 -4.6535 -5.0620 18 1 8.9271 -3.7494 -5.0627 19 6 8.7704 -5.7610 -5.7593 20 7 8.0514 -6.8622 -5.7580 21 14 10.3797 -5.6974 -6.7056 22 1 11.4919 -6.1270 -5.8203 23 1 10.3009 -6.6057 -7.8777 24 1 10.6257 -4.3089 -7.1711 25 6 2.0721 -0.7820 -1.2222 26 1 -0.3634 0.4957 0.9003 27 1 -0.3634 0.5316 -0.8793 28 1 -0.3633 -1.0276 -0.0207 29 1 1.3176 -1.4821 1.5741 30 1 2.3411 -0.0857 2.0136 31 1 3.1693 -2.6134 0.8565 32 1 4.1928 -1.2169 1.2959 33 1 3.4550 -4.2330 -0.6736 34 1 2.0935 -3.3436 -1.3971 35 1 3.2986 -4.1316 -2.4437 36 1 4.9987 -4.2175 -2.8780 37 1 6.7390 -2.5726 -4.3757 38 1 7.6094 -3.1417 -2.9312 39 1 6.1729 -5.8411 -2.6861 40 1 7.2870 -6.7652 -3.7217 41 1 7.9297 -5.5898 -2.5492 42 1 5.8375 -4.2222 -6.0215 43 1 6.0655 -5.9665 -5.7491 44 1 4.9511 -5.0424 -4.7140 45 1 8.3569 -7.6415 -6.2482 46 1 2.1250 -0.1382 -2.1001 47 1 1.4581 -1.6601 -1.4222 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459249035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:11 Heat of formation + Delta-G solvation = -46.595082 kcal Electronic energy + Delta-G solvation = -23272.247865 eV Core-core repulsion = 20068.393235 eV Total energy + Delta-G solvation = -3203.854629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.13385 -38.32636 -36.33887 -34.75692 -33.19948 -31.12597 -30.39794 -28.54757 -26.82325 -25.70338 -25.65342 -25.14782 -24.20852 -20.92313 -20.10490 -19.10048 -18.82563 -17.89366 -16.26860 -15.91955 -15.74448 -15.22778 -14.70918 -14.37101 -13.90406 -13.82041 -13.41469 -13.38694 -13.26272 -12.85476 -12.61820 -12.41748 -12.33368 -12.01329 -11.72563 -11.55793 -11.32932 -11.17268 -11.08941 -10.89142 -10.84156 -10.73039 -10.66970 -10.49308 -10.35859 -10.18049 -9.66654 -9.60571 -9.27157 -8.76761 -8.59449 -8.37895 -8.07976 -6.00205 -4.09895 2.99421 3.29887 3.36734 3.41316 3.63600 4.32553 4.41075 4.45882 4.56498 4.66446 5.05570 5.12567 5.14813 5.26625 5.28342 5.34478 5.37886 5.43032 5.48744 5.61705 5.68143 5.71476 5.78291 5.90499 5.92685 6.09812 6.14669 6.23089 6.27228 6.40200 6.53242 6.70541 6.84360 6.84633 6.96611 7.05833 7.14360 7.31886 7.42661 7.58231 7.71880 8.03329 8.14736 8.40342 8.47585 8.90044 9.08272 9.55732 11.01309 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042785 B = 0.003224 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.283558 B = 8681.614045 C = 8823.913008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.076 0.924 4 C -0.117 4.117 5 C -0.137 4.137 6 C 0.155 3.845 7 H 0.106 0.894 8 N -0.631 5.631 9 C 0.078 3.922 10 C 0.699 3.301 11 O -0.600 6.600 12 N -0.732 5.732 13 C 0.149 3.851 14 C 0.056 3.944 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.504 4.504 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.132 4.132 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.394 0.606 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.004 0.996 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.004 0.996 45 H 0.259 0.741 46 H 0.069 0.931 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.231 7.120 11.412 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.155 4.155 5 C -0.176 4.176 6 C 0.050 3.950 7 H 0.124 0.876 8 N -0.369 5.369 9 C -0.066 4.066 10 C 0.401 3.599 11 O -0.479 6.479 12 N -0.388 5.388 13 C 0.026 3.974 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.526 5.526 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.170 4.170 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.230 0.770 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.023 0.977 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.023 0.977 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.690 7.647 11.292 20.044 hybrid contribution 0.580 -0.524 -0.488 0.921 sum -14.110 7.123 10.804 19.146 Atomic orbital electron populations 1.21789 0.94918 1.01742 1.01532 1.21905 0.95489 0.99405 0.94772 0.90584 1.22165 0.97004 0.98790 0.97502 1.22514 0.98152 1.00867 0.96027 1.21741 0.95489 0.88187 0.89548 0.87648 1.46997 1.22479 1.13923 1.53472 1.21656 0.96233 0.86828 1.01847 1.16030 0.80772 0.84337 0.78797 1.90859 1.57025 1.31612 1.68380 1.45654 1.26236 1.13983 1.52922 1.21580 0.81970 1.00298 0.93549 1.18358 0.95171 0.88639 0.92293 1.21819 0.96130 1.03436 0.97319 1.21812 0.94647 1.03326 0.98887 1.20995 1.04801 0.98646 1.29862 0.92403 1.24879 0.97060 0.95361 0.96237 1.69808 1.37691 1.02594 1.42458 0.86567 0.83845 0.77974 0.79464 1.20731 1.21295 1.19893 1.22961 0.96078 1.00135 0.97838 0.92766 0.92696 0.92669 0.91711 0.91839 0.91282 0.91473 0.92941 0.90961 0.91339 0.76976 0.93009 0.93012 0.97665 0.89631 0.95455 0.95438 0.89640 0.97704 0.93049 0.91237 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.11 37.16 0.34 -0.65 16 2 C -0.10 -0.80 3.46 -88.96 -0.31 -1.11 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -0.95 6.37 -25.61 -0.16 -1.11 16 5 C -0.14 -1.40 6.43 -25.62 -0.16 -1.57 16 6 C 0.15 1.94 3.27 -66.26 -0.22 1.72 16 7 H 0.11 1.58 6.97 -51.93 -0.36 1.21 16 8 N -0.63 -9.04 2.86 -177.75 -0.51 -9.55 16 9 C 0.08 0.85 9.07 59.84 0.54 1.40 16 10 C 0.70 13.20 8.28 -86.92 -0.72 12.48 16 11 O -0.60 -13.52 15.70 5.28 0.08 -13.44 16 12 N -0.73 -13.85 4.82 -65.23 -0.31 -14.16 16 13 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 14 C 0.06 1.32 0.50 -155.66 -0.08 1.25 16 15 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 16 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 17 C -0.50 -13.38 8.01 -34.44 -0.28 -13.66 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.75 9.35 55.43 0.52 -23.23 16 21 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 25 C -0.13 -1.32 5.85 -24.72 -0.14 -1.46 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.06 0.48 7.84 -51.93 -0.41 0.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.69 6.93 -51.93 -0.36 0.33 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.53 7.89 -51.93 -0.41 0.12 16 34 H 0.07 0.63 6.12 -51.93 -0.32 0.31 16 35 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 36 H 0.39 6.73 3.89 -40.82 -0.16 6.57 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 40 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 44 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 45 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.68 6.05 -51.93 -0.31 0.37 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -29.19 353.29 -8.81 -38.01 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -8.19 Total: 4.27 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.70 Total: -3.09 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.31 Total: -46.94 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.19 -8.81 -38.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459249035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.588 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds