Wall clock time and date at job start Tue Mar 31 2020 06:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.43369 * 2 1 4 4 C 1.54886 * 110.48351 * 122.54440 * 2 1 3 5 5 C 1.54897 * 102.74512 * 156.62186 * 4 2 1 6 6 C 1.54270 * 104.19358 * 322.05303 * 5 4 2 7 7 H 1.08996 * 110.03357 * 264.27800 * 6 5 4 8 8 N 1.46503 * 110.02634 * 142.89387 * 6 5 4 9 9 C 1.46491 * 120.00413 * 301.45370 * 8 6 5 10 10 C 1.34783 * 119.99449 * 121.45703 * 8 6 5 11 11 O 1.21590 * 119.99935 * 359.97438 * 10 8 6 12 12 N 1.34779 * 119.99768 * 179.97438 * 10 8 6 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47233 * 299.99500 * 14 13 12 16 16 C 1.52996 * 109.47328 * 59.99969 * 14 13 12 17 17 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00327 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46999 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46979 * 120.00025 * 21 19 17 24 24 H 1.48498 * 109.46942 * 239.99938 * 21 19 17 25 25 C 1.53873 * 106.59805 * 23.61583 * 6 5 4 26 26 H 1.08999 * 109.46900 * 298.90612 * 1 2 3 27 27 H 1.08997 * 109.47406 * 58.91130 * 1 2 3 28 28 H 1.09003 * 109.47140 * 178.90847 * 1 2 3 29 29 H 1.08999 * 110.75824 * 38.30819 * 4 2 1 30 30 H 1.08999 * 110.91683 * 275.00484 * 4 2 1 31 31 H 1.09000 * 110.48250 * 203.37932 * 5 4 2 32 32 H 1.08993 * 110.60061 * 80.79281 * 5 4 2 33 33 H 1.08999 * 109.47474 * 270.00178 * 9 8 6 34 34 H 1.09007 * 109.47434 * 30.00260 * 9 8 6 35 35 H 1.09004 * 109.47368 * 150.00397 * 9 8 6 36 36 H 0.97000 * 119.99708 * 359.97438 * 12 10 8 37 37 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 38 38 H 1.09001 * 109.46813 * 299.99742 * 13 12 10 39 39 H 1.09000 * 109.46986 * 60.00203 * 15 14 13 40 40 H 1.08993 * 109.47662 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 42 42 H 1.08992 * 109.47554 * 59.99639 * 16 14 13 43 43 H 1.09004 * 109.47108 * 179.97438 * 16 14 13 44 44 H 1.09000 * 109.46870 * 299.99783 * 16 14 13 45 45 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 46 46 H 1.08991 * 110.03513 * 119.28310 * 25 6 5 47 47 H 1.09007 * 110.02740 * 240.71597 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0720 -0.7805 1.2231 5 6 3.4907 -1.1970 0.7614 6 6 3.3165 -1.5414 -0.7323 7 1 3.1700 -2.6147 -0.8534 8 7 4.4942 -1.1075 -1.4879 9 6 4.8937 0.3018 -1.4762 10 6 5.2101 -2.0052 -2.1939 11 8 4.8787 -3.1750 -2.2032 12 7 6.2933 -1.6060 -2.8895 13 6 7.0712 -2.5815 -3.6573 14 6 8.2388 -1.8732 -4.3472 15 6 7.6971 -0.7970 -5.2903 16 6 9.1357 -1.2225 -3.2923 17 6 9.0386 -2.8767 -5.1376 18 1 8.7438 -3.9156 -5.1465 19 6 10.1466 -2.4682 -5.8492 20 7 10.5053 -1.2030 -5.8387 21 14 11.1384 -3.7121 -6.8284 22 1 10.5307 -5.0587 -6.6775 23 1 11.1377 -3.3271 -8.2626 24 1 12.5348 -3.7392 -6.3238 25 6 2.0699 -0.7803 -1.2164 26 1 -0.3633 0.4968 0.8996 27 1 -0.3634 0.5306 -0.8800 28 1 -0.3633 -1.0275 -0.0196 29 1 1.4580 -1.6584 1.4242 30 1 2.1250 -0.1383 2.1022 31 1 3.8315 -2.0706 1.3170 32 1 4.1915 -0.3712 0.8833 33 1 4.4012 0.8259 -2.2952 34 1 4.6027 0.7542 -0.5281 35 1 5.9747 0.3741 -1.5965 36 1 6.5574 -0.6726 -2.8822 37 1 6.4320 -3.0455 -4.4086 38 1 7.4574 -3.3479 -2.9854 39 1 7.1184 -0.0712 -4.7190 40 1 8.5288 -0.2928 -5.7821 41 1 7.0581 -1.2607 -6.0418 42 1 9.5216 -1.9891 -2.6205 43 1 9.9678 -0.7183 -3.7838 44 1 8.5569 -0.4967 -2.7210 45 1 11.2846 -0.9156 -6.3397 46 1 2.3411 -0.0882 -2.0135 47 1 1.3175 -1.4842 -1.5723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459249037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:13 Heat of formation + Delta-G solvation = -45.886378 kcal Electronic energy + Delta-G solvation = -23308.928337 eV Core-core repulsion = 20105.104440 eV Total energy + Delta-G solvation = -3203.823898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.16731 -38.32295 -36.33026 -34.70030 -33.19632 -31.12944 -30.39430 -28.56654 -26.77404 -25.70410 -25.63912 -25.13642 -24.19590 -20.88783 -20.28151 -19.03824 -18.81660 -17.89721 -16.48872 -15.80030 -15.44977 -15.01077 -14.91103 -14.61175 -14.02302 -13.69738 -13.47509 -13.45143 -13.02814 -12.83975 -12.55152 -12.43128 -12.15375 -11.99646 -11.84689 -11.59636 -11.34019 -11.18025 -11.07516 -10.89680 -10.85466 -10.68197 -10.64766 -10.57368 -10.36200 -10.18068 -9.65093 -9.60734 -9.26988 -8.75853 -8.59745 -8.38425 -8.08004 -6.00355 -4.09984 3.01036 3.28581 3.37117 3.42439 3.64588 4.32007 4.41187 4.45065 4.56806 4.65583 5.10080 5.11160 5.21374 5.26532 5.28783 5.34619 5.39977 5.44618 5.48569 5.60950 5.67125 5.70271 5.79301 5.88984 5.93925 6.09903 6.17505 6.21688 6.27019 6.40283 6.53249 6.72099 6.84617 6.84656 6.96947 7.05810 7.14660 7.32324 7.42902 7.58162 7.71979 8.03347 8.14787 8.40411 8.48009 8.90271 9.08839 9.55718 11.01173 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042630 B = 0.003246 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.653431 B = 8625.035198 C = 8758.262280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.137 4.137 6 C 0.155 3.845 7 H 0.103 0.897 8 N -0.632 5.632 9 C 0.079 3.921 10 C 0.699 3.301 11 O -0.600 6.600 12 N -0.733 5.733 13 C 0.149 3.851 14 C 0.056 3.944 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.504 4.504 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.132 4.132 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.394 0.606 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.004 0.996 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.004 0.996 45 H 0.259 0.741 46 H 0.070 0.930 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.053 6.695 11.880 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.175 4.175 6 C 0.050 3.950 7 H 0.121 0.879 8 N -0.370 5.370 9 C -0.065 4.065 10 C 0.400 3.600 11 O -0.479 6.479 12 N -0.388 5.388 13 C 0.026 3.974 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.542 4.542 18 H 0.077 0.923 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.170 4.170 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.230 0.770 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.023 0.977 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.023 0.977 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.106 5.932 11.750 20.036 hybrid contribution 0.753 -0.058 -0.574 0.949 sum -14.353 5.874 11.176 19.116 Atomic orbital electron populations 1.21805 0.95052 1.01842 1.01440 1.21952 0.95431 0.99169 0.94933 0.90881 1.22530 0.95884 0.99880 0.97302 1.22772 0.97281 1.01811 0.95656 1.21531 0.83370 1.00614 0.89479 0.87927 1.47103 1.29961 1.07568 1.52387 1.21632 1.00399 0.82368 1.02076 1.16041 0.80354 0.84643 0.78932 1.90857 1.71842 1.16345 1.68860 1.45655 1.28420 1.13031 1.51710 1.21579 0.92461 0.90289 0.93062 1.18364 0.90036 0.93775 0.92322 1.21813 1.00080 0.97917 0.98873 1.21813 1.01335 0.98251 0.97285 1.21037 1.10407 0.94216 1.28564 0.92345 1.24881 0.97109 0.95237 0.96333 1.69813 1.26179 1.14497 1.42056 0.86517 0.79915 0.81731 0.79740 1.19737 1.21089 1.21084 1.22627 0.97114 0.99391 0.97899 0.92814 0.92776 0.92558 0.91257 0.91568 0.91248 0.90973 0.92967 0.91008 0.91403 0.76983 0.93013 0.93029 0.97663 0.89635 0.95463 0.95448 0.89634 0.97695 0.93104 0.91138 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.12 37.16 0.34 -0.68 16 2 C -0.10 -0.77 3.46 -88.96 -0.31 -1.08 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.12 -0.94 6.33 -24.74 -0.16 -1.10 16 5 C -0.14 -1.37 6.35 -25.07 -0.16 -1.53 16 6 C 0.15 1.92 3.31 -66.81 -0.22 1.70 16 7 H 0.10 1.53 6.94 -51.93 -0.36 1.17 16 8 N -0.63 -9.03 2.76 -178.38 -0.49 -9.52 16 9 C 0.08 0.86 9.14 59.84 0.55 1.41 16 10 C 0.70 13.18 8.28 -86.91 -0.72 12.46 16 11 O -0.60 -13.53 15.69 5.29 0.08 -13.45 16 12 N -0.73 -13.85 4.82 -65.22 -0.31 -14.17 16 13 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 14 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 15 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 16 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 17 C -0.50 -13.36 8.01 -34.44 -0.28 -13.64 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.75 9.35 55.43 0.52 -23.23 16 21 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.13 -1.34 5.86 -25.61 -0.15 -1.49 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 29 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.70 6.22 -51.93 -0.32 0.38 16 33 H 0.05 0.53 7.88 -51.93 -0.41 0.12 16 34 H 0.07 0.63 6.35 -51.93 -0.33 0.30 16 35 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 36 H 0.39 6.73 3.89 -40.82 -0.16 6.57 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 40 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 44 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 45 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 46 H 0.07 0.76 7.17 -51.93 -0.37 0.38 16 47 H 0.07 0.73 7.81 -51.92 -0.41 0.32 16 LS Contribution 353.63 15.07 5.33 5.33 Total: -1.00 -29.21 353.63 -8.81 -38.02 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.22 Total: 4.24 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.69 Total: -3.09 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.29 Total: -46.92 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.21 -8.81 -38.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459249037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.867 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds