Wall clock time and date at job start Tue Mar 31 2020 06:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.36916 * 2 1 4 4 C 1.54382 * 110.32368 * 237.81910 * 2 1 3 5 5 N 1.48565 * 104.58992 * 217.25321 * 4 2 1 6 6 C 1.46908 * 110.99315 * 159.04293 * 5 4 2 7 7 C 1.48555 * 104.22264 * 39.48456 * 5 4 2 8 8 C 1.54266 * 110.32408 * 122.18232 * 2 1 3 9 9 H 1.08996 * 110.32512 * 237.89842 * 8 2 1 10 10 C 1.50707 * 110.31933 * 359.97438 * 8 2 1 11 11 O 1.21287 * 119.99635 * 87.35735 * 10 8 2 12 12 N 1.34774 * 120.00104 * 267.07121 * 10 8 2 13 13 C 1.46499 * 120.00085 * 180.27826 * 12 10 8 14 14 C 1.52994 * 109.47306 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46920 * 300.00170 * 14 13 12 16 16 C 1.52998 * 109.47366 * 59.99929 * 14 13 12 17 17 C 1.52994 * 109.47402 * 180.02562 * 14 13 12 18 18 C 1.50703 * 109.47372 * 180.02562 * 17 14 13 19 19 H 1.07997 * 119.99895 * 359.97438 * 18 17 14 20 20 C 1.37881 * 120.00283 * 179.97438 * 18 17 14 21 21 N 1.31523 * 119.99701 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00129 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47195 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46893 * 120.00055 * 22 20 18 25 25 H 1.48497 * 109.47269 * 239.99856 * 22 20 18 26 26 H 1.09005 * 109.47345 * 296.90091 * 1 2 3 27 27 H 1.09002 * 109.47225 * 56.89701 * 1 2 3 28 28 H 1.09006 * 109.47178 * 176.89939 * 1 2 3 29 29 H 1.09002 * 110.41025 * 336.03088 * 4 2 1 30 30 H 1.08998 * 110.40925 * 98.47679 * 4 2 1 31 31 H 1.08997 * 109.47397 * 60.00066 * 6 5 4 32 32 H 1.09003 * 109.46603 * 179.97438 * 6 5 4 33 33 H 1.08996 * 109.46822 * 299.99223 * 6 5 4 34 34 H 1.09004 * 110.40855 * 201.73617 * 7 5 4 35 35 H 1.09000 * 110.41036 * 79.30036 * 7 5 4 36 36 H 0.97000 * 119.99695 * 0.28587 * 12 10 8 37 37 H 1.09002 * 109.47243 * 300.00251 * 13 12 10 38 38 H 1.09006 * 109.47173 * 60.00259 * 13 12 10 39 39 H 1.08996 * 109.47386 * 60.00387 * 15 14 13 40 40 H 1.09005 * 109.46517 * 179.97438 * 15 14 13 41 41 H 1.08993 * 109.47141 * 299.99631 * 15 14 13 42 42 H 1.09001 * 109.47088 * 59.99709 * 16 14 13 43 43 H 1.08998 * 109.47785 * 179.97438 * 16 14 13 44 44 H 1.09001 * 109.47106 * 300.00566 * 16 14 13 45 45 H 1.09002 * 109.47010 * 299.99772 * 17 14 13 46 46 H 1.08997 * 109.47470 * 59.99501 * 17 14 13 47 47 H 0.96996 * 119.99735 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0662 -0.7710 -1.2253 5 7 3.2693 -1.4829 -0.7224 6 6 3.6068 -2.6217 -1.5869 7 6 2.8805 -1.9422 0.6358 8 6 2.0658 -0.7705 1.2244 9 1 2.7066 -0.1263 1.8263 10 6 0.9223 -1.2928 2.0555 11 8 0.4302 -2.3715 1.8001 12 7 0.4503 -0.5638 3.0861 13 6 -0.6573 -1.0743 3.8978 14 6 -0.9970 -0.0606 4.9923 15 6 0.2282 0.1592 5.8819 16 6 -1.4052 1.2665 4.3495 17 6 -2.1533 -0.5939 5.8404 18 6 -2.4883 0.4048 6.9181 19 1 -1.9319 1.3275 6.9910 20 6 -3.5052 0.1407 7.8109 21 7 -4.1832 -0.9828 7.7217 22 14 -3.9200 1.3783 9.1471 23 1 -3.0174 2.5520 9.0321 24 1 -5.3289 1.8209 8.9917 25 1 -3.7438 0.7463 10.4792 26 1 -0.3634 0.4650 0.9165 27 1 -0.3634 0.5613 -0.8609 28 1 -0.3634 -1.0262 -0.0556 29 1 1.3228 -1.4848 -1.5804 30 1 2.3394 -0.0779 -2.0208 31 1 3.8087 -2.2642 -2.5965 32 1 4.4913 -3.1248 -1.1962 33 1 2.7709 -3.3210 -1.6093 34 1 3.7669 -2.1308 1.2415 35 1 2.2647 -2.8393 0.5719 36 1 0.8439 0.2989 3.2903 37 1 -1.5304 -1.2305 3.2642 38 1 -0.3667 -2.0199 4.3555 39 1 1.0523 0.5391 5.2780 40 1 -0.0137 0.8818 6.6613 41 1 0.5190 -0.7861 6.3399 42 1 -2.2781 1.1099 3.7157 43 1 -1.6477 1.9885 5.1291 44 1 -0.5812 1.6463 3.7455 45 1 -3.0263 -0.7508 5.2069 46 1 -1.8622 -1.5392 6.2984 47 1 -4.8989 -1.1685 8.3496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489944388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:23 Heat of formation + Delta-G solvation = -54.974922 kcal Electronic energy + Delta-G solvation = -23279.525991 eV Core-core repulsion = 20075.307985 eV Total energy + Delta-G solvation = -3204.218007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56545 -38.39313 -36.93728 -33.84799 -33.35595 -32.04677 -30.21611 -27.47450 -27.07148 -26.53229 -26.27593 -24.77230 -23.02214 -21.55041 -21.22565 -19.57682 -18.09616 -17.03369 -16.45763 -16.23617 -15.64268 -15.03122 -14.79221 -14.70229 -14.50351 -14.06045 -13.75226 -13.44298 -13.07308 -12.80723 -12.75706 -12.56054 -12.44660 -12.08199 -12.05970 -11.76894 -11.66234 -11.28505 -11.17918 -11.04537 -10.98645 -10.85917 -10.79067 -10.66199 -10.42286 -10.25792 -9.89637 -9.70619 -9.16771 -8.92915 -8.77920 -8.70389 -8.37801 -6.01688 -4.02951 2.77312 3.28861 3.33133 3.37295 3.39717 3.90380 4.28247 4.41874 4.43909 4.68304 4.99101 5.05528 5.14461 5.21229 5.26114 5.30766 5.33965 5.43977 5.50113 5.56762 5.60493 5.62316 5.66010 5.73079 5.78220 5.83949 5.94917 6.13933 6.16843 6.21078 6.27238 6.37287 6.52061 6.55548 6.61179 6.72712 6.75427 7.04539 7.05528 7.11064 7.62342 7.74172 7.74374 7.97186 8.38001 8.42970 9.02163 9.60358 11.09830 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042153 B = 0.003180 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.091179 B = 8803.177801 C = 8903.225629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.078 4.078 3 H 0.087 0.913 4 C 0.036 3.964 5 N -0.516 5.516 6 C 0.013 3.987 7 C 0.043 3.957 8 C -0.114 4.114 9 H 0.097 0.903 10 C 0.521 3.479 11 O -0.547 6.547 12 N -0.720 5.720 13 C 0.128 3.872 14 C -0.072 4.072 15 C -0.127 4.127 16 C -0.127 4.127 17 C 0.036 3.964 18 C -0.510 4.510 19 H 0.060 0.940 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.398 0.602 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.029 0.971 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.029 0.971 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.046 2.228 -16.072 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.098 4.098 3 H 0.106 0.894 4 C -0.092 4.092 5 N -0.240 5.240 6 C -0.136 4.136 7 C -0.085 4.085 8 C -0.136 4.136 9 H 0.115 0.885 10 C 0.306 3.694 11 O -0.425 6.425 12 N -0.371 5.371 13 C 0.005 3.995 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.002 4.002 18 C -0.549 4.549 19 H 0.078 0.922 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.234 0.766 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.020 1.684 -16.156 21.457 hybrid contribution -0.868 0.448 0.918 1.340 sum 13.153 2.132 -15.238 20.242 Atomic orbital electron populations 1.22064 0.93984 1.03120 1.02553 1.21782 0.96134 0.99350 0.92509 0.89413 1.23235 0.91286 0.97486 0.97206 1.65402 1.33123 1.23057 1.02401 1.22505 1.00783 0.92624 0.97666 1.23072 0.98631 0.96555 0.90228 1.22142 0.95917 0.98525 0.96997 0.88460 1.20237 0.84033 0.84744 0.80338 1.90677 1.60239 1.21859 1.69714 1.46265 1.36823 1.22660 1.31329 1.21619 0.87996 0.97609 0.92260 1.20897 0.98106 0.94259 0.94007 1.21760 0.95472 1.01819 0.99373 1.21757 0.99089 0.97568 0.99972 1.19090 0.91009 0.96333 0.93725 1.21221 1.16511 1.04115 1.13019 0.92199 1.25021 0.96401 0.95318 0.97803 1.69978 1.22321 1.23805 1.37292 0.86592 0.78204 0.81517 0.82011 1.19791 1.21136 1.21126 0.91598 0.92163 0.91586 0.93250 0.89949 0.91304 0.91189 0.95046 0.89847 0.91385 0.76642 0.91921 0.91884 0.95234 0.91437 0.93384 0.93417 0.91432 0.95234 0.96391 0.96381 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 7.95 37.16 0.30 -1.45 16 2 C -0.08 -0.77 3.65 -89.23 -0.33 -1.10 16 3 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.04 0.34 6.04 -2.18 -0.01 0.33 16 5 N -0.52 -5.27 5.66 -238.23 -1.35 -6.62 16 6 C 0.01 0.11 9.53 60.07 0.57 0.68 16 7 C 0.04 0.48 5.99 -2.19 -0.01 0.47 16 8 C -0.11 -1.25 3.44 -90.39 -0.31 -1.56 16 9 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 10 C 0.52 7.41 4.78 -10.98 -0.05 7.36 16 11 O -0.55 -9.87 14.99 5.55 0.08 -9.79 16 12 N -0.72 -10.02 4.50 -60.29 -0.27 -10.29 16 13 C 0.13 2.21 4.56 -4.05 -0.02 2.19 16 14 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 15 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 16 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 17 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 18 C -0.51 -13.43 7.65 -34.44 -0.26 -13.69 16 19 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 20 C 0.06 1.54 5.46 -17.81 -0.10 1.44 16 21 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 22 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H 0.07 0.77 7.14 -51.93 -0.37 0.40 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.87 7.02 -51.93 -0.36 0.51 16 29 H 0.05 0.51 7.64 -51.93 -0.40 0.11 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.03 0.28 7.97 -51.93 -0.41 -0.13 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.90 6.63 -51.93 -0.34 0.56 16 36 H 0.40 4.71 6.16 -40.82 -0.25 4.46 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 40 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 44 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -30.25 358.40 -8.72 -38.97 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.47 Total: 1.57 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 0.17 Total: -9.72 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.88 Total: -42.49 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.25 -8.72 -38.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489944388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.009 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds