Wall clock time and date at job start Tue Mar 31 2020 06:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.29480 * 2 1 4 4 C 1.54385 * 110.40995 * 122.18559 * 2 1 3 5 5 N 1.48567 * 104.59374 * 142.79271 * 4 2 1 6 6 C 1.46899 * 110.99811 * 200.95920 * 5 4 2 7 7 C 1.48564 * 104.22096 * 320.51492 * 5 4 2 8 8 C 1.54260 * 110.32317 * 237.87420 * 2 1 3 9 9 H 1.08998 * 110.33088 * 122.00908 * 8 2 1 10 10 C 1.50698 * 110.32580 * 359.89294 * 8 2 1 11 11 O 1.21273 * 120.00659 * 273.00918 * 10 8 2 12 12 N 1.34781 * 119.99602 * 92.72664 * 10 8 2 13 13 C 1.46498 * 120.00017 * 180.27851 * 12 10 8 14 14 C 1.53005 * 109.47038 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47269 * 299.99960 * 14 13 12 16 16 C 1.52999 * 109.46957 * 60.00088 * 14 13 12 17 17 C 1.52995 * 109.46908 * 180.02562 * 14 13 12 18 18 C 1.50706 * 109.47060 * 180.02562 * 17 14 13 19 19 H 1.08000 * 119.99907 * 359.97438 * 18 17 14 20 20 C 1.37877 * 119.99863 * 179.97438 * 18 17 14 21 21 N 1.31514 * 119.99735 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 120.00198 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47412 * 89.99894 * 22 20 18 24 24 H 1.48502 * 109.47329 * 209.99906 * 22 20 18 25 25 H 1.48502 * 109.47290 * 329.99656 * 22 20 18 26 26 H 1.08999 * 109.47374 * 182.84231 * 1 2 3 27 27 H 1.09002 * 109.46887 * 302.84402 * 1 2 3 28 28 H 1.09000 * 109.47252 * 62.83690 * 1 2 3 29 29 H 1.08999 * 110.41087 * 261.56440 * 4 2 1 30 30 H 1.08991 * 110.40955 * 24.01065 * 4 2 1 31 31 H 1.09007 * 109.46813 * 59.99883 * 6 5 4 32 32 H 1.08992 * 109.46944 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46803 * 300.00377 * 6 5 4 34 34 H 1.08994 * 110.41325 * 280.70798 * 7 5 4 35 35 H 1.08996 * 110.41086 * 158.26367 * 7 5 4 36 36 H 0.96999 * 119.99695 * 0.28064 * 12 10 8 37 37 H 1.08994 * 109.47192 * 300.00467 * 13 12 10 38 38 H 1.09005 * 109.47170 * 60.00273 * 13 12 10 39 39 H 1.09003 * 109.46703 * 60.00220 * 15 14 13 40 40 H 1.08996 * 109.46825 * 179.97438 * 15 14 13 41 41 H 1.08995 * 109.47215 * 300.00338 * 15 14 13 42 42 H 1.09001 * 109.47071 * 59.99743 * 16 14 13 43 43 H 1.09003 * 109.47419 * 179.97438 * 16 14 13 44 44 H 1.09003 * 109.47489 * 300.00070 * 16 14 13 45 45 H 1.09001 * 109.47574 * 300.00014 * 17 14 13 46 46 H 1.08996 * 109.47415 * 60.00315 * 17 14 13 47 47 H 0.96999 * 120.00210 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0683 -0.7707 1.2246 5 7 3.2721 -1.4807 0.7204 6 6 3.6119 -2.6193 1.5841 7 6 2.8827 -1.9401 -0.6377 8 6 2.0657 -0.7693 -1.2251 9 1 2.7053 -0.1241 -1.8274 10 6 0.9223 -1.2935 -2.0550 11 8 0.4281 -2.3701 -1.7953 12 7 0.4452 -0.5633 -3.0825 13 6 -0.6703 -1.0701 -3.8856 14 6 -1.0145 -0.0557 -4.9781 15 6 -1.4130 1.2732 -4.3329 16 6 0.2048 0.1592 -5.8769 17 6 -2.1799 -0.5847 -5.8163 18 6 -2.5186 0.4142 -6.8928 19 1 -1.9588 1.3345 -6.9708 20 6 -3.5430 0.1531 -7.7779 21 7 -3.8388 1.0251 -8.7169 22 14 -4.5115 -1.4383 -7.6424 23 1 -5.6746 -1.2349 -6.7419 24 1 -4.9923 -1.8414 -8.9884 25 1 -3.6377 -2.5041 -7.0893 26 1 -0.3634 -1.0264 0.0510 27 1 -0.3633 0.5574 0.8634 28 1 -0.3634 0.4691 -0.9143 29 1 2.3413 -0.0774 2.0201 30 1 1.3264 -1.4856 1.5801 31 1 2.7770 -3.3198 1.6071 32 1 4.4962 -3.1215 1.1920 33 1 3.8141 -2.2618 2.5938 34 1 2.2682 -2.8380 -0.5736 35 1 3.7688 -2.1274 -1.2442 36 1 0.8405 0.2978 -3.2902 37 1 -0.3866 -2.0170 -4.3448 38 1 -1.5391 -1.2228 -3.2453 39 1 -0.5830 1.6502 -3.7354 40 1 -1.6578 1.9959 -5.1111 41 1 -2.2816 1.1201 -3.6925 42 1 0.4887 -0.7875 -6.3366 43 1 -0.0405 0.8816 -6.6555 44 1 1.0348 0.5363 -5.2794 45 1 -1.8965 -1.5316 -6.2760 46 1 -3.0484 -0.7375 -5.1757 47 1 -4.5597 0.8416 -9.3394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489944389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:26 Heat of formation + Delta-G solvation = -51.405859 kcal Electronic energy + Delta-G solvation = -23335.636229 eV Core-core repulsion = 20131.572989 eV Total energy + Delta-G solvation = -3204.063240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62616 -38.46644 -37.04851 -33.90124 -33.38778 -32.07345 -30.26644 -27.91181 -27.37209 -26.58125 -26.34404 -24.79766 -22.73552 -21.50747 -21.23577 -19.63980 -18.08018 -17.09802 -16.89071 -16.33894 -15.75044 -15.10489 -14.88184 -14.75475 -14.14391 -14.11014 -13.87365 -13.54576 -13.33128 -12.84426 -12.75856 -12.61119 -12.52210 -12.29461 -12.16640 -11.80725 -11.69975 -11.32937 -11.26643 -11.15088 -11.02993 -11.02582 -10.83236 -10.63540 -10.50973 -9.99036 -9.87207 -9.74958 -9.41523 -9.01118 -8.83768 -8.76750 -8.55084 -6.05808 -4.03129 2.70529 3.26779 3.30157 3.38348 3.42221 3.86109 4.24430 4.38048 4.44204 4.64118 4.94560 5.01813 5.09857 5.17680 5.22495 5.26667 5.27317 5.37715 5.41280 5.50606 5.52946 5.59229 5.61046 5.62702 5.74124 5.80172 5.91288 6.07726 6.09727 6.12243 6.17245 6.29329 6.46637 6.48670 6.57402 6.67771 6.69397 6.88452 6.99549 7.03213 7.18203 7.34679 7.65073 7.78044 8.34381 8.51328 8.98248 9.56938 11.06950 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035881 B = 0.003392 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.164653 B = 8252.336638 C = 8396.223302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.078 4.078 3 H 0.088 0.912 4 C 0.036 3.964 5 N -0.516 5.516 6 C 0.013 3.987 7 C 0.043 3.957 8 C -0.114 4.114 9 H 0.098 0.902 10 C 0.522 3.478 11 O -0.547 6.547 12 N -0.719 5.719 13 C 0.126 3.874 14 C -0.063 4.063 15 C -0.128 4.128 16 C -0.129 4.129 17 C -0.002 4.002 18 C -0.511 4.511 19 H 0.078 0.922 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.266 1.266 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.400 0.600 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.031 0.969 45 H 0.018 0.982 46 H 0.013 0.987 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.496 -2.251 18.467 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.098 4.098 3 H 0.106 0.894 4 C -0.092 4.092 5 N -0.240 5.240 6 C -0.136 4.136 7 C -0.085 4.085 8 C -0.136 4.136 9 H 0.116 0.884 10 C 0.308 3.692 11 O -0.425 6.425 12 N -0.371 5.371 13 C 0.003 3.997 14 C -0.063 4.063 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.040 4.040 18 C -0.549 4.549 19 H 0.096 0.904 20 C -0.134 4.134 21 N -0.543 5.543 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.235 0.765 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.031 0.969 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.491 -2.665 18.484 23.038 hybrid contribution -1.162 -0.960 -0.174 1.517 sum 12.329 -3.625 18.310 22.370 Atomic orbital electron populations 1.22064 0.94008 1.03080 1.02586 1.21780 0.96116 0.99401 0.92467 0.89356 1.23233 0.91260 0.97502 0.97214 1.65402 1.33040 1.23133 1.02387 1.22505 1.00773 0.92601 0.97695 1.23078 0.98620 0.96518 0.90283 1.22141 0.95877 0.98553 0.97002 0.88385 1.20248 0.84072 0.84674 0.80250 1.90670 1.60288 1.22057 1.69531 1.46232 1.36162 1.22873 1.31790 1.21631 0.88006 0.97609 0.92499 1.20684 0.97518 0.94384 0.93726 1.21773 0.99125 0.97458 1.00208 1.21771 0.95273 1.02059 0.99478 1.19588 0.92290 0.97026 0.95061 1.21079 1.16871 1.04980 1.11956 0.90385 1.24998 0.96968 0.96354 0.95111 1.69900 1.30736 1.35494 1.18160 0.86859 0.80734 0.84897 0.77282 1.20383 1.21494 1.19016 0.91629 0.92131 0.91588 0.89909 0.93270 0.95078 0.91174 0.91272 0.91425 0.89819 0.76477 0.91896 0.91937 0.94995 0.90878 0.93453 0.93428 0.90873 0.94979 0.96407 0.96865 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 7.95 37.15 0.30 -1.38 16 2 C -0.08 -0.74 3.65 -89.24 -0.33 -1.07 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.04 0.33 6.04 -2.17 -0.01 0.32 16 5 N -0.52 -5.12 5.66 -238.22 -1.35 -6.47 16 6 C 0.01 0.11 9.53 60.06 0.57 0.68 16 7 C 0.04 0.47 5.99 -2.17 -0.01 0.45 16 8 C -0.11 -1.20 3.44 -90.39 -0.31 -1.51 16 9 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 10 C 0.52 7.12 4.80 -10.98 -0.05 7.06 16 11 O -0.55 -9.48 14.97 5.56 0.08 -9.40 16 12 N -0.72 -9.54 4.49 -60.29 -0.27 -9.82 16 13 C 0.13 2.04 4.56 -4.04 -0.02 2.03 16 14 C -0.06 -1.12 0.54 -154.51 -0.08 -1.20 16 15 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 16 C -0.13 -2.17 8.05 37.16 0.30 -1.88 16 17 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 18 C -0.51 -13.55 8.20 -34.44 -0.28 -13.83 16 19 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 20 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 21 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 22 Si 0.87 21.42 27.47 -169.99 -4.67 16.76 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 26 H 0.06 0.84 7.00 -51.93 -0.36 0.47 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.74 7.15 -51.93 -0.37 0.37 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 31 H 0.03 0.27 7.97 -51.92 -0.41 -0.14 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.87 6.64 -51.93 -0.34 0.52 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.40 4.52 6.16 -40.82 -0.25 4.27 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 40 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 44 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 45 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 46 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -30.52 354.78 -8.34 -38.86 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -8.44 Total: 1.58 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 0.18 Total: -10.53 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.85 Total: -42.61 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.52 -8.34 -38.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489944389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.548 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds