Wall clock time and date at job start Tue Mar 31 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.62872 * 2 1 4 4 C 1.54320 * 110.70801 * 123.10901 * 2 1 3 5 5 N 1.47437 * 107.23257 * 140.66759 * 4 2 1 6 6 C 1.46901 * 111.00223 * 123.25511 * 5 4 2 7 7 C 1.47846 * 108.56923 * 0.98995 * 5 4 2 8 8 C 1.54915 * 104.79538 * 335.90424 * 7 5 4 9 9 H 1.09001 * 110.98790 * 278.98277 * 8 7 5 10 10 C 1.50694 * 110.98903 * 155.16179 * 8 7 5 11 11 O 1.21279 * 120.00202 * 241.45200 * 10 8 7 12 12 N 1.34782 * 119.99924 * 61.45900 * 10 8 7 13 13 C 1.46496 * 119.99720 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.47259 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46637 * 300.00195 * 14 13 12 16 16 C 1.52996 * 109.47015 * 59.99648 * 14 13 12 17 17 C 1.52991 * 109.47334 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.47435 * 179.97438 * 17 14 13 19 19 H 1.08000 * 119.99550 * 0.02562 * 18 17 14 20 20 C 1.37870 * 120.00410 * 179.97438 * 18 17 14 21 21 N 1.31522 * 120.00001 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99928 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.47001 * 89.99735 * 22 20 18 24 24 H 1.48504 * 109.47191 * 209.99130 * 22 20 18 25 25 H 1.48493 * 109.47380 * 329.99730 * 22 20 18 26 26 H 1.08998 * 109.46955 * 298.34338 * 1 2 3 27 27 H 1.08995 * 109.47213 * 58.34602 * 1 2 3 28 28 H 1.08997 * 109.46949 * 178.35073 * 1 2 3 29 29 H 1.08998 * 109.88703 * 21.25725 * 4 2 1 30 30 H 1.08999 * 109.88555 * 260.07443 * 4 2 1 31 31 H 1.08999 * 109.47367 * 299.28606 * 6 5 4 32 32 H 1.09002 * 109.46856 * 59.28320 * 6 5 4 33 33 H 1.09001 * 109.47193 * 179.27893 * 6 5 4 34 34 H 1.08995 * 110.38030 * 94.73340 * 7 5 4 35 35 H 1.09000 * 110.37255 * 217.07995 * 7 5 4 36 36 H 0.96996 * 120.00206 * 359.97438 * 12 10 8 37 37 H 1.09000 * 109.47434 * 299.99550 * 13 12 10 38 38 H 1.08997 * 109.47636 * 59.99989 * 13 12 10 39 39 H 1.08995 * 109.47467 * 59.99659 * 15 14 13 40 40 H 1.09006 * 109.47176 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.47178 * 299.99678 * 15 14 13 42 42 H 1.08998 * 109.47047 * 60.00201 * 16 14 13 43 43 H 1.09001 * 109.47104 * 180.02562 * 16 14 13 44 44 H 1.08999 * 109.47618 * 300.00193 * 16 14 13 45 45 H 1.09000 * 109.47462 * 299.99741 * 17 14 13 46 46 H 1.09007 * 109.47577 * 59.99936 * 17 14 13 47 47 H 0.97003 * 120.00006 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0757 -0.7885 1.2091 5 7 3.2490 -1.5489 0.7412 6 6 4.4407 -1.2190 1.5343 7 6 3.4651 -1.2476 -0.6900 8 6 2.0785 -0.7965 -1.2131 9 1 1.4459 -1.6563 -1.4339 10 6 2.2205 0.0914 -2.4223 11 8 1.8126 1.2330 -2.3877 12 7 2.8007 -0.3832 -3.5425 13 6 2.9382 0.4799 -4.7182 14 6 3.6255 -0.2966 -5.8433 15 6 5.0109 -0.7492 -5.3780 16 6 2.7838 -1.5217 -6.2055 17 6 3.7686 0.6045 -7.0714 18 6 4.4461 -0.1600 -8.1793 19 1 4.7444 -1.1862 -8.0232 20 6 4.6842 0.4501 -9.3925 21 7 5.2759 -0.2170 -10.3592 22 14 4.1676 2.2248 -9.6628 23 1 5.2788 3.1289 -9.2712 24 1 3.8422 2.4328 -11.0967 25 1 2.9713 2.5236 -8.8353 26 1 -0.3633 0.4879 0.9045 27 1 -0.3633 0.5393 -0.8747 28 1 -0.3633 -1.0272 -0.0296 29 1 1.3133 -1.4737 1.5796 30 1 2.3721 -0.0981 1.9988 31 1 4.6624 -0.1567 1.4323 32 1 4.2553 -1.4524 2.5828 33 1 5.2885 -1.8032 1.1764 34 1 4.1930 -0.4442 -0.8031 35 1 3.7984 -2.1401 -1.2195 36 1 3.1272 -1.2961 -3.5701 37 1 1.9512 0.8027 -5.0495 38 1 3.5383 1.3525 -4.4603 39 1 4.9086 -1.3913 -4.5032 40 1 5.5005 -1.3028 -6.1793 41 1 5.6107 0.1236 -5.1198 42 1 1.7967 -1.1993 -6.5370 43 1 3.2736 -2.0751 -7.0067 44 1 2.6814 -2.1639 -5.3308 45 1 2.7814 0.9266 -7.4027 46 1 4.3681 1.4777 -6.8136 47 1 5.4438 0.2124 -11.2127 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489944390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:28 Heat of formation + Delta-G solvation = -54.945450 kcal Electronic energy + Delta-G solvation = -23144.061538 eV Core-core repulsion = 19939.844810 eV Total energy + Delta-G solvation = -3204.216729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.44487 -38.60166 -37.11904 -33.74233 -33.45938 -32.16200 -30.41514 -27.84280 -27.25275 -26.58094 -26.34514 -24.97547 -22.72306 -21.79118 -20.66141 -19.93993 -18.34877 -17.26948 -16.81283 -16.02200 -15.82785 -15.07281 -14.94853 -14.47516 -14.16068 -14.02304 -13.77054 -13.70241 -13.37836 -13.15316 -12.95525 -12.74395 -12.45590 -12.33378 -12.26401 -11.92790 -11.61322 -11.26936 -11.17428 -11.16347 -11.10254 -11.02176 -10.84628 -10.63679 -10.50883 -9.99163 -9.92725 -9.75507 -9.44365 -9.01110 -8.84168 -8.64928 -8.54914 -6.05667 -4.03048 2.69117 3.26459 3.30292 3.38471 3.42399 3.76092 4.15900 4.35721 4.44331 4.62647 4.92122 4.99972 5.06598 5.09957 5.15088 5.26849 5.27470 5.33920 5.38308 5.49678 5.50501 5.56496 5.61471 5.61966 5.68950 5.76841 6.01150 6.08400 6.09283 6.12327 6.16287 6.29217 6.46025 6.56782 6.57447 6.66640 6.69457 6.88276 6.99487 7.03135 7.18168 7.34666 7.63792 7.77950 8.32594 8.51418 8.98307 9.57048 11.07055 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029694 B = 0.003448 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.731871 B = 8118.161992 C = 8530.876748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.087 0.913 4 C 0.043 3.957 5 N -0.532 5.532 6 C 0.018 3.982 7 C 0.052 3.948 8 C -0.118 4.118 9 H 0.110 0.890 10 C 0.518 3.482 11 O -0.543 6.543 12 N -0.719 5.719 13 C 0.125 3.875 14 C -0.063 4.063 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.002 4.002 18 C -0.511 4.511 19 H 0.078 0.922 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.266 1.266 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.400 0.600 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.031 0.969 45 H 0.018 0.982 46 H 0.013 0.987 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.431 -3.228 22.473 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.105 0.895 4 C -0.085 4.085 5 N -0.256 5.256 6 C -0.130 4.130 7 C -0.076 4.076 8 C -0.140 4.140 9 H 0.128 0.872 10 C 0.303 3.697 11 O -0.421 6.421 12 N -0.370 5.370 13 C 0.002 3.998 14 C -0.063 4.063 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.040 4.040 18 C -0.549 4.549 19 H 0.096 0.904 20 C -0.134 4.134 21 N -0.543 5.543 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.235 0.765 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.031 0.969 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.732 -2.919 22.373 23.279 hybrid contribution 0.185 1.414 -0.476 1.503 sum -5.547 -1.506 21.897 22.638 Atomic orbital electron populations 1.21708 0.93743 1.01832 1.02356 1.22206 0.97048 0.99606 0.92332 0.89469 1.23008 0.93246 0.95565 0.96686 1.63603 1.04389 1.55193 1.02406 1.22570 0.92994 0.99057 0.98421 1.23024 0.95162 1.00539 0.88907 1.22574 0.98630 0.99132 0.93675 0.87162 1.20282 0.77660 0.87841 0.83962 1.90686 1.48982 1.18967 1.83428 1.46200 1.60476 1.16961 1.13388 1.21641 1.00727 0.93098 0.84313 1.20688 0.94710 0.96366 0.94583 1.21773 0.96497 1.00483 0.99829 1.21772 0.99576 0.96955 1.00285 1.19588 0.96962 0.94832 0.92583 1.21078 1.37916 1.00288 0.95613 0.90380 1.24997 0.94720 0.97629 0.96077 1.69905 1.42939 1.37053 1.04387 0.86860 0.79696 0.85937 0.77283 1.20383 1.21485 1.19014 0.92474 0.91790 0.92531 0.90052 0.92490 0.95323 0.91242 0.91146 0.92841 0.89319 0.76467 0.91845 0.91927 0.94998 0.90847 0.93460 0.93409 0.90853 0.94976 0.96383 0.96862 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.13 37.16 0.34 -0.94 16 2 C -0.09 -0.93 2.61 -88.80 -0.23 -1.16 16 3 H 0.09 1.05 7.50 -51.93 -0.39 0.66 16 4 C 0.04 0.37 6.50 -2.84 -0.02 0.35 16 5 N -0.53 -4.93 5.44 -239.52 -1.30 -6.24 16 6 C 0.02 0.14 9.12 60.07 0.55 0.69 16 7 C 0.05 0.50 6.15 -2.29 -0.01 0.48 16 8 C -0.12 -1.24 2.87 -89.63 -0.26 -1.49 16 9 H 0.11 1.03 8.04 -51.93 -0.42 0.61 16 10 C 0.52 7.16 7.16 -10.99 -0.08 7.08 16 11 O -0.54 -9.54 15.80 5.56 0.09 -9.45 16 12 N -0.72 -9.68 4.91 -60.30 -0.30 -9.97 16 13 C 0.13 2.06 4.56 -4.04 -0.02 2.04 16 14 C -0.06 -1.13 0.54 -154.51 -0.08 -1.22 16 15 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 16 C -0.13 -2.18 8.05 37.16 0.30 -1.89 16 17 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 18 C -0.51 -13.58 8.20 -34.44 -0.28 -13.86 16 19 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 20 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 21 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 22 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 29 H 0.08 0.65 7.82 -51.93 -0.41 0.24 16 30 H 0.06 0.45 7.58 -51.93 -0.39 0.06 16 31 H 0.03 0.23 8.09 -51.93 -0.42 -0.19 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 4.58 6.16 -40.82 -0.25 4.32 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 40 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 44 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 45 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 46 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -30.65 360.07 -8.21 -38.86 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -8.55 Total: 1.07 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 0.32 Total: -10.13 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.83 Total: -42.55 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.65 -8.21 -38.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489944390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.087 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds