Wall clock time and date at job start Tue Mar 31 2020 06:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.28910 * 2 1 4 4 C 1.54384 * 110.32514 * 237.76189 * 2 1 3 5 5 N 1.48563 * 104.59454 * 264.95649 * 4 2 1 6 6 C 1.46899 * 111.00157 * 200.96077 * 5 4 2 7 7 C 1.48567 * 104.22188 * 320.51862 * 5 4 2 8 8 C 1.54263 * 110.32215 * 122.12282 * 2 1 3 9 9 H 1.09002 * 110.32515 * 359.90394 * 8 2 1 10 10 C 1.50692 * 110.32472 * 237.79200 * 8 2 1 11 11 O 1.21282 * 120.00217 * 0.02562 * 10 8 2 12 12 N 1.34777 * 120.00138 * 180.02562 * 10 8 2 13 13 C 1.46498 * 120.00346 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47311 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.46984 * 60.00251 * 14 13 12 16 16 C 1.53003 * 109.46978 * 300.00069 * 14 13 12 17 17 C 1.53000 * 109.46872 * 180.02562 * 14 13 12 18 18 C 1.50708 * 109.46973 * 180.02562 * 17 14 13 19 19 H 1.07991 * 119.99789 * 0.02562 * 18 17 14 20 20 C 1.37877 * 120.00008 * 179.97438 * 18 17 14 21 21 N 1.31514 * 120.00089 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99556 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99737 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99730 * 22 20 18 26 26 H 1.08995 * 109.47174 * 297.87355 * 1 2 3 27 27 H 1.08996 * 109.46774 * 57.87942 * 1 2 3 28 28 H 1.09003 * 109.46700 * 177.87264 * 1 2 3 29 29 H 1.08994 * 110.40849 * 23.73212 * 4 2 1 30 30 H 1.08994 * 110.41248 * 146.06344 * 4 2 1 31 31 H 1.08992 * 109.47008 * 59.99655 * 6 5 4 32 32 H 1.08997 * 109.47095 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.46813 * 299.99693 * 6 5 4 34 34 H 1.09003 * 110.40884 * 280.70200 * 7 5 4 35 35 H 1.08997 * 110.41127 * 158.25974 * 7 5 4 36 36 H 0.97000 * 120.00165 * 359.97438 * 12 10 8 37 37 H 1.09007 * 109.47173 * 59.99932 * 13 12 10 38 38 H 1.09000 * 109.47353 * 300.00047 * 13 12 10 39 39 H 1.08998 * 109.47229 * 179.97438 * 15 14 13 40 40 H 1.09003 * 109.47307 * 299.99648 * 15 14 13 41 41 H 1.09000 * 109.47006 * 60.00077 * 15 14 13 42 42 H 1.09001 * 109.46867 * 299.99636 * 16 14 13 43 43 H 1.08993 * 109.47365 * 60.00455 * 16 14 13 44 44 H 1.08998 * 109.46607 * 179.97438 * 16 14 13 45 45 H 1.08994 * 109.48028 * 60.00123 * 17 14 13 46 46 H 1.09000 * 109.47206 * 299.99977 * 17 14 13 47 47 H 0.96997 * 119.99848 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0663 -0.7723 -1.2245 5 7 2.3148 -2.1475 -0.7204 6 6 3.2650 -2.8611 -1.5839 7 6 2.8807 -1.9416 0.6378 8 6 2.0658 -0.7692 1.2251 9 1 1.2387 -1.1453 1.8274 10 6 2.9539 0.1215 2.0551 11 8 3.1512 1.2685 1.7141 12 7 3.5289 -0.3565 3.1764 13 6 4.3927 0.5092 3.9829 14 6 4.9125 -0.2722 5.1913 15 6 5.7124 -1.4841 4.7093 16 6 3.7304 -0.7458 6.0393 17 6 5.8142 0.6322 6.0339 18 6 6.3267 -0.1376 7.2239 19 1 6.0386 -1.1688 7.3647 20 6 7.1644 0.4743 8.1321 21 7 7.6120 -0.1976 9.1702 22 14 7.6633 2.2578 7.8881 23 1 8.9062 2.3177 7.0774 24 1 7.9039 2.8899 9.2101 25 1 6.5768 2.9838 7.1827 26 1 -0.3633 0.4804 0.9084 27 1 -0.3633 0.5464 -0.8703 28 1 -0.3633 -1.0270 -0.0381 29 1 1.3214 -0.7879 -2.0200 30 1 2.9930 -0.3230 -1.5813 31 1 4.2114 -2.3209 -1.6070 32 1 3.4287 -3.8650 -1.1923 33 1 2.8596 -2.9270 -2.5936 34 1 3.9361 -1.6765 0.5737 35 1 2.7490 -2.8376 1.2443 36 1 3.3709 -1.2738 3.4494 37 1 3.8228 1.3725 4.3267 38 1 5.2347 0.8470 3.3787 39 1 6.0831 -2.0405 5.5701 40 1 5.0697 -2.1283 4.1092 41 1 6.5545 -1.1466 4.1051 42 1 3.1606 0.1177 6.3828 43 1 3.0877 -1.3899 5.4393 44 1 4.1007 -1.3028 6.8999 45 1 5.2441 1.4954 6.3774 46 1 6.6564 0.9700 5.4300 47 1 8.2010 0.2331 9.8093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489944391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:31 Heat of formation + Delta-G solvation = -54.230580 kcal Electronic energy + Delta-G solvation = -23149.391689 eV Core-core repulsion = 19945.205960 eV Total energy + Delta-G solvation = -3204.185730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.48278 -38.54833 -37.11109 -33.74477 -33.47723 -32.16566 -30.34124 -27.84294 -27.20740 -26.58894 -26.35820 -25.08152 -22.67193 -21.75952 -20.73753 -19.74157 -18.33167 -17.25914 -16.81252 -16.16679 -15.63065 -15.32904 -14.98970 -14.44437 -14.22290 -13.96301 -13.66003 -13.57956 -13.45971 -13.13258 -12.90654 -12.75218 -12.46713 -12.34082 -12.25460 -11.76769 -11.63611 -11.27909 -11.18190 -11.13338 -11.03072 -10.95492 -10.84340 -10.64196 -10.51557 -9.99801 -9.92074 -9.75900 -9.45130 -9.01690 -8.86804 -8.79557 -8.55356 -6.06090 -4.03471 2.68600 3.27662 3.30046 3.38232 3.42151 3.80378 4.27188 4.34238 4.43990 4.68039 4.92009 4.98239 5.10141 5.13496 5.15297 5.26441 5.33182 5.37138 5.41513 5.49730 5.54459 5.56763 5.60932 5.63086 5.70772 5.82582 5.95137 6.07559 6.08660 6.12176 6.15780 6.28419 6.44855 6.50751 6.56686 6.64509 6.67560 6.87627 6.98826 7.02495 7.17697 7.34187 7.63079 7.77483 8.31736 8.50971 8.97880 9.56637 11.06644 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029843 B = 0.003425 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.021385 B = 8173.547324 C = 8468.719654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.101 0.899 4 C 0.035 3.965 5 N -0.512 5.512 6 C 0.012 3.988 7 C 0.042 3.958 8 C -0.112 4.112 9 H 0.107 0.893 10 C 0.513 3.487 11 O -0.544 6.544 12 N -0.718 5.718 13 C 0.125 3.875 14 C -0.063 4.063 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.002 4.002 18 C -0.511 4.511 19 H 0.078 0.922 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.400 0.600 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.031 0.969 44 H 0.073 0.927 45 H 0.018 0.982 46 H 0.013 0.987 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.162 -4.388 -19.195 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 H 0.119 0.881 4 C -0.093 4.093 5 N -0.236 5.236 6 C -0.137 4.137 7 C -0.086 4.086 8 C -0.134 4.134 9 H 0.125 0.875 10 C 0.299 3.701 11 O -0.422 6.422 12 N -0.370 5.370 13 C 0.002 3.998 14 C -0.063 4.063 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.040 4.040 18 C -0.549 4.549 19 H 0.096 0.904 20 C -0.134 4.134 21 N -0.543 5.543 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.235 0.765 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.036 0.964 46 H 0.031 0.969 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.376 -3.877 -19.264 23.223 hybrid contribution 1.183 0.953 0.155 1.527 sum -11.193 -2.925 -19.109 22.338 Atomic orbital electron populations 1.21799 0.93989 1.02081 1.01704 1.21913 0.96494 1.00604 0.91818 0.88095 1.23240 1.00214 0.88217 0.97633 1.65402 1.40588 1.15561 1.02039 1.22526 0.94097 0.99233 0.97853 1.23085 0.96839 0.97508 0.91205 1.22155 0.98435 0.95539 0.97254 0.87542 1.20435 0.80456 0.88073 0.81171 1.90662 1.62107 1.18839 1.70553 1.46175 1.49351 1.16387 1.25049 1.21648 0.93058 0.93096 0.92002 1.20690 0.96256 0.96323 0.93080 1.21773 0.98672 0.97087 1.01046 1.21772 0.96310 1.00478 1.00024 1.19589 0.94073 0.95062 0.95239 1.21077 1.28257 0.99731 1.05855 0.90384 1.24997 0.95753 0.97628 0.95038 1.69899 1.34272 1.36891 1.13212 0.86862 0.79419 0.86056 0.77446 1.20382 1.21476 1.19006 0.92624 0.92554 0.92031 0.89797 0.93635 0.95184 0.91048 0.91180 0.93102 0.89216 0.76469 0.91820 0.91932 0.90837 0.95018 0.93475 0.93390 0.94986 0.90849 0.96369 0.96869 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.90 37.16 0.33 -0.87 16 2 C -0.09 -0.92 3.24 -89.23 -0.29 -1.21 16 3 H 0.10 1.27 6.46 -51.93 -0.34 0.93 16 4 C 0.03 0.33 6.04 -2.18 -0.01 0.31 16 5 N -0.51 -4.82 5.66 -238.23 -1.35 -6.17 16 6 C 0.01 0.09 9.53 60.06 0.57 0.66 16 7 C 0.04 0.40 6.01 -2.18 -0.01 0.39 16 8 C -0.11 -1.18 3.10 -90.39 -0.28 -1.46 16 9 H 0.11 0.99 7.71 -51.93 -0.40 0.58 16 10 C 0.51 7.14 7.00 -10.99 -0.08 7.07 16 11 O -0.54 -9.62 15.25 5.56 0.08 -9.53 16 12 N -0.72 -9.69 4.93 -60.30 -0.30 -9.98 16 13 C 0.12 2.06 4.56 -4.04 -0.02 2.04 16 14 C -0.06 -1.13 0.54 -154.51 -0.08 -1.22 16 15 C -0.13 -2.17 8.05 37.15 0.30 -1.87 16 16 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 17 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 18 C -0.51 -13.58 8.20 -34.44 -0.28 -13.86 16 19 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 20 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 22 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.69 7.86 -51.93 -0.41 0.28 16 30 H 0.05 0.45 7.97 -51.93 -0.41 0.04 16 31 H 0.03 0.25 7.97 -51.93 -0.41 -0.17 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.54 7.62 -51.93 -0.40 0.15 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.40 4.56 6.16 -40.82 -0.25 4.31 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 40 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 44 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 45 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 46 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -30.63 358.96 -8.28 -38.91 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.49 Total: 1.15 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 0.26 Total: -10.23 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.87 Total: -42.48 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.63 -8.28 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489944391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.320 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds