Wall clock time and date at job start Tue Mar 31 2020 06:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.88351 * 2 1 4 4 C 1.55154 * 111.00421 * 236.12159 * 2 1 3 5 5 C 1.54329 * 102.93769 * 206.42317 * 4 2 1 6 6 H 1.08996 * 109.87873 * 262.61848 * 5 4 2 7 7 C 1.53006 * 109.87825 * 141.61098 * 5 4 2 8 8 N 1.47011 * 107.27389 * 22.19310 * 5 4 2 9 9 C 1.34781 * 125.64845 * 181.04045 * 8 5 4 10 10 O 1.21588 * 120.00189 * 359.97438 * 9 8 5 11 11 N 1.34779 * 120.00086 * 179.97438 * 9 8 5 12 12 C 1.46495 * 119.99898 * 179.97438 * 11 9 8 13 13 C 1.53010 * 109.47089 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46830 * 300.00330 * 13 12 11 15 15 C 1.53006 * 109.46887 * 60.00258 * 13 12 11 16 16 C 1.53000 * 109.47027 * 180.02562 * 13 12 11 17 17 C 1.50704 * 109.46959 * 180.02562 * 16 13 12 18 18 H 1.08000 * 119.99478 * 359.97438 * 17 16 13 19 19 C 1.37869 * 119.99796 * 179.97438 * 17 16 13 20 20 N 1.31515 * 120.00216 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99856 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46820 * 60.00066 * 21 19 17 23 23 H 1.48496 * 109.47184 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47125 * 300.00404 * 21 19 17 25 25 C 1.47428 * 108.70720 * 1.05666 * 8 5 4 26 26 H 1.08999 * 109.46967 * 183.88274 * 1 2 3 27 27 H 1.09008 * 109.46881 * 303.87709 * 1 2 3 28 28 H 1.08997 * 109.47078 * 63.87790 * 1 2 3 29 29 H 1.08997 * 110.71888 * 88.05899 * 4 2 1 30 30 H 1.08997 * 110.71785 * 324.78160 * 4 2 1 31 31 H 1.09001 * 109.46801 * 59.99806 * 7 5 4 32 32 H 1.09001 * 109.46998 * 179.97438 * 7 5 4 33 33 H 1.09000 * 109.47050 * 299.99694 * 7 5 4 34 34 H 0.96998 * 119.99829 * 0.02562 * 11 9 8 35 35 H 1.08994 * 109.47685 * 299.99944 * 12 11 9 36 36 H 1.09001 * 109.47175 * 60.00227 * 12 11 9 37 37 H 1.08998 * 109.46949 * 60.00302 * 14 13 12 38 38 H 1.09006 * 109.46724 * 179.97438 * 14 13 12 39 39 H 1.09001 * 109.47138 * 299.99615 * 14 13 12 40 40 H 1.09003 * 109.46873 * 59.99999 * 15 13 12 41 41 H 1.08999 * 109.46777 * 179.97438 * 15 13 12 42 42 H 1.09003 * 109.46958 * 299.99923 * 15 13 12 43 43 H 1.09002 * 109.46765 * 299.99572 * 16 13 12 44 44 H 1.08995 * 109.47153 * 59.99981 * 16 13 12 45 45 H 0.97007 * 119.99774 * 179.97438 * 20 19 17 46 46 H 1.08992 * 110.36737 * 217.03344 * 25 8 5 47 47 H 1.08999 * 110.45530 * 94.75494 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0862 -0.8074 -1.2025 5 6 3.4675 -1.2738 -0.6964 6 1 4.2429 -0.6008 -1.0623 7 6 3.7448 -2.6987 -1.1799 8 7 3.4271 -1.2433 0.7728 9 6 4.4478 -1.5618 1.5935 10 8 5.5155 -1.9112 1.1284 11 7 4.2850 -1.4929 2.9296 12 6 5.3942 -1.8397 3.8215 13 6 4.9483 -1.6788 5.2763 14 6 4.5290 -0.2283 5.5237 15 6 3.7631 -2.6064 5.5520 16 6 6.1069 -2.0403 6.2078 17 6 5.6676 -1.8824 7.6407 18 1 4.6625 -1.5564 7.8644 19 6 6.5486 -2.1542 8.6658 20 7 7.7722 -2.5516 8.3932 21 14 6.0041 -1.9578 10.4419 22 1 4.8538 -2.8580 10.7093 23 1 7.1283 -2.3100 11.3460 24 1 5.5973 -0.5499 10.6822 25 6 2.0853 -0.8070 1.2001 26 1 -0.3633 -1.0253 0.0696 27 1 -0.3633 0.5729 0.8533 28 1 -0.3633 0.4525 -0.9227 29 1 2.1921 -0.1691 -2.0796 30 1 1.4468 -1.6626 -1.4215 31 1 3.7347 -2.7210 -2.2696 32 1 4.7216 -3.0211 -0.8193 33 1 2.9759 -3.3689 -0.7956 34 1 3.4331 -1.2145 3.3006 35 1 5.6925 -2.8731 3.6456 36 1 6.2387 -1.1792 3.6248 37 1 3.7037 0.0296 4.8601 38 1 4.2110 -0.1138 6.5600 39 1 5.3734 0.4325 5.3273 40 1 4.0618 -3.6397 5.3756 41 1 3.4457 -2.4921 6.5885 42 1 2.9378 -2.3484 4.8883 43 1 6.4059 -3.0736 6.0316 44 1 6.9510 -1.3792 6.0112 45 1 8.3922 -2.7425 9.1145 46 1 2.1560 -0.1728 2.0836 47 1 1.4509 -1.6698 1.4030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000513112728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:55 Heat of formation + Delta-G solvation = -54.807852 kcal Electronic energy + Delta-G solvation = -23196.924588 eV Core-core repulsion = 19992.713826 eV Total energy + Delta-G solvation = -3204.210762 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39701 -38.29462 -36.85817 -33.66862 -33.10382 -32.27820 -31.20232 -27.34288 -27.04555 -26.48980 -26.17288 -25.65119 -23.06293 -21.68918 -20.71405 -19.53942 -18.51444 -17.43394 -16.77944 -16.27947 -15.36360 -14.98339 -14.50738 -14.42885 -14.12943 -13.93195 -13.68253 -13.41850 -13.07596 -12.94997 -12.84069 -12.66305 -12.33506 -12.19015 -12.03897 -11.98222 -11.71102 -11.15520 -11.11591 -11.00724 -10.98515 -10.85785 -10.74692 -10.60926 -10.36756 -10.24590 -9.88252 -9.84761 -9.17717 -8.91552 -8.84449 -8.37430 -8.33944 -5.98108 -3.99513 2.74072 3.32954 3.38397 3.39526 3.43814 4.09788 4.16855 4.42994 4.47012 4.53957 4.94530 5.02935 5.09974 5.20761 5.27809 5.36563 5.37240 5.45345 5.52670 5.54833 5.58924 5.66372 5.67730 5.74131 5.77912 5.92904 6.02105 6.16959 6.20291 6.25945 6.29528 6.42443 6.44514 6.63755 6.64879 6.85385 7.08808 7.09642 7.15685 7.21776 7.66350 7.79187 8.00543 8.19701 8.42495 8.84915 9.05095 9.63419 11.13336 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030743 B = 0.003390 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.569184 B = 8256.831928 C = 8864.537951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.085 0.915 4 C -0.124 4.124 5 C 0.154 3.846 6 H 0.072 0.928 7 C -0.163 4.163 8 N -0.638 5.638 9 C 0.718 3.282 10 O -0.590 6.590 11 N -0.736 5.736 12 C 0.147 3.853 13 C -0.072 4.072 14 C -0.125 4.125 15 C -0.125 4.125 16 C 0.037 3.963 17 C -0.512 4.512 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.103 3.897 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.393 0.607 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.027 0.973 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.071 0.929 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.455 4.629 -17.797 24.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.103 0.897 4 C -0.162 4.162 5 C 0.049 3.951 6 H 0.090 0.910 7 C -0.221 4.221 8 N -0.377 5.377 9 C 0.420 3.580 10 O -0.468 6.468 11 N -0.391 5.391 12 C 0.023 3.977 13 C -0.073 4.073 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.001 4.001 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.020 4.020 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.228 0.772 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.384 4.279 -17.969 23.411 hybrid contribution -0.600 0.206 1.273 1.423 sum -14.984 4.484 -16.696 22.878 Atomic orbital electron populations 1.21705 0.93719 1.02275 1.02184 1.22330 0.96116 0.99431 0.94519 0.89693 1.22825 0.95358 1.00173 0.97855 1.21319 0.97215 0.97439 0.79077 0.91005 1.22162 1.03396 0.96004 1.00539 1.47660 1.11641 1.72274 1.06144 1.15525 0.82730 0.78519 0.81214 1.90898 1.25529 1.54807 1.75576 1.45403 1.17267 1.72641 1.03798 1.21489 0.87532 1.00272 0.88372 1.20918 0.98644 0.95368 0.92364 1.21747 0.99244 0.95827 1.01450 1.21747 0.96122 0.98982 1.01423 1.19080 0.91322 0.96923 0.92735 1.21148 0.98093 1.44963 0.90787 0.92328 1.25009 0.94994 0.95499 0.98967 1.69959 1.05059 1.46113 1.32264 0.86712 0.78076 0.78477 0.85032 1.20340 1.21405 1.20335 1.22318 0.84060 0.97994 0.97649 0.92274 0.92187 0.92130 0.90126 0.90352 0.92083 0.90874 0.92768 0.77198 0.92047 0.92046 0.95450 0.91483 0.93356 0.93368 0.91486 0.95411 0.96316 0.96313 0.92986 0.91059 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.31 37.16 0.35 -0.42 16 2 C -0.10 -0.74 3.64 -88.47 -0.32 -1.06 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -0.90 5.95 -24.90 -0.15 -1.04 16 5 C 0.15 1.66 3.46 -66.95 -0.23 1.43 16 6 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 7 C -0.16 -1.79 9.09 37.16 0.34 -1.45 16 8 N -0.64 -8.10 3.06 -168.69 -0.52 -8.62 16 9 C 0.72 12.00 8.28 -86.91 -0.72 11.28 16 10 O -0.59 -12.13 15.39 5.29 0.08 -12.05 16 11 N -0.74 -11.64 4.92 -65.22 -0.32 -11.96 16 12 C 0.15 2.73 4.56 -4.04 -0.02 2.71 16 13 C -0.07 -1.41 0.54 -154.50 -0.08 -1.49 16 14 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 15 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 16 C 0.04 0.92 4.04 -27.88 -0.11 0.80 16 17 C -0.51 -13.67 7.65 -34.44 -0.26 -13.93 16 18 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.10 0.95 6.05 -2.53 -0.02 0.94 16 26 H 0.06 0.31 8.07 -51.93 -0.42 -0.10 16 27 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.52 7.75 -51.93 -0.40 0.11 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.04 6.90 -51.93 -0.36 0.68 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.39 5.36 4.64 -40.82 -0.19 5.17 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 38 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 42 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.07 0.64 7.30 -51.93 -0.38 0.26 16 47 H 0.07 0.57 7.98 -51.93 -0.41 0.16 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -31.56 361.07 -8.82 -40.38 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.49 Total: 1.07 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -0.73 Total: -4.65 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.10 Total: -46.44 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.56 -8.82 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513112728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.428 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds