Wall clock time and date at job start Tue Mar 31 2020 06:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.00011 * 2 1 4 4 C 1.54334 * 109.99020 * 238.96811 * 2 1 3 5 5 C 1.55158 * 103.01891 * 218.66594 * 4 2 1 6 6 H 1.08999 * 111.00283 * 277.22859 * 5 4 2 7 7 C 1.53000 * 111.00550 * 153.38090 * 5 4 2 8 8 C 1.54909 * 101.58350 * 35.30385 * 5 4 2 9 9 N 1.47017 * 109.88402 * 121.09624 * 2 1 3 10 10 C 1.34773 * 125.65228 * 298.39381 * 9 2 1 11 11 O 1.21592 * 119.99531 * 359.71577 * 10 9 2 12 12 N 1.34777 * 120.00462 * 179.71580 * 10 9 2 13 13 C 1.46497 * 119.99886 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46729 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.46891 * 60.00395 * 14 13 12 16 16 C 1.53002 * 109.47454 * 300.00062 * 14 13 12 17 17 C 1.53005 * 109.47197 * 179.97438 * 14 13 12 18 18 C 1.50695 * 109.47088 * 180.02562 * 17 14 13 19 19 H 1.07995 * 120.00496 * 0.02562 * 18 17 14 20 20 C 1.37880 * 119.99572 * 180.02562 * 18 17 14 21 21 N 1.31511 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99951 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 59.99744 * 22 20 18 24 24 H 1.48503 * 109.47261 * 299.99924 * 22 20 18 25 25 H 1.48500 * 109.47454 * 179.97438 * 22 20 18 26 26 H 1.08999 * 109.46833 * 300.35675 * 1 2 3 27 27 H 1.09003 * 109.47287 * 60.35750 * 1 2 3 28 28 H 1.09000 * 109.47323 * 180.35664 * 1 2 3 29 29 H 1.08999 * 110.85276 * 100.19511 * 4 2 1 30 30 H 1.09005 * 110.66614 * 337.04234 * 4 2 1 31 31 H 1.08997 * 109.47109 * 306.34589 * 7 5 4 32 32 H 1.08995 * 109.47435 * 66.34615 * 7 5 4 33 33 H 1.09001 * 109.47050 * 186.35151 * 7 5 4 34 34 H 1.09004 * 110.36659 * 204.15507 * 8 5 4 35 35 H 1.08995 * 110.45775 * 81.87758 * 8 5 4 36 36 H 0.97003 * 119.99640 * 0.02562 * 12 10 9 37 37 H 1.09002 * 109.46915 * 60.00544 * 13 12 10 38 38 H 1.09001 * 109.47487 * 299.99836 * 13 12 10 39 39 H 1.09004 * 109.47368 * 179.97438 * 15 14 13 40 40 H 1.08996 * 109.47261 * 299.99425 * 15 14 13 41 41 H 1.09001 * 109.47372 * 59.99964 * 15 14 13 42 42 H 1.09002 * 109.47067 * 300.00138 * 16 14 13 43 43 H 1.09000 * 109.46497 * 59.99891 * 16 14 13 44 44 H 1.08996 * 109.46876 * 180.02562 * 16 14 13 45 45 H 1.09002 * 109.46935 * 60.00099 * 17 14 13 46 46 H 1.08998 * 109.47061 * 300.00893 * 17 14 13 47 47 H 0.97006 * 119.99995 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 6 3.2863 -1.5183 -0.6916 6 1 4.1669 -0.8768 -0.6580 7 6 3.5591 -2.7776 -1.5165 8 6 2.8099 -1.8825 0.7367 9 7 2.0300 -0.7140 1.1839 10 6 1.8075 -0.3621 2.4656 11 8 1.1459 0.6262 2.7186 12 7 2.3182 -1.1056 3.4671 13 6 2.0767 -0.7226 4.8603 14 6 2.7605 -1.7263 5.7909 15 6 4.2658 -1.7318 5.5171 16 6 2.1913 -3.1242 5.5402 17 6 2.5089 -1.3260 7.2461 18 6 3.1830 -2.3142 8.1626 19 1 3.7359 -3.1444 7.7488 20 6 3.0937 -2.1583 9.5297 21 7 2.4199 -1.1476 10.0337 22 14 3.9298 -3.3828 10.6659 23 1 5.3909 -3.3871 10.3999 24 1 3.3785 -4.7401 10.4228 25 1 3.6855 -2.9944 12.0782 26 1 -0.3633 0.5194 0.8868 27 1 -0.3634 0.5083 -0.8932 28 1 -0.3634 -1.0276 0.0064 29 1 2.3597 -0.0448 -2.0192 30 1 1.3066 -1.4404 -1.6226 31 1 2.6523 -3.3799 -1.5709 32 1 3.8672 -2.4933 -2.5226 33 1 4.3521 -3.3570 -1.0437 34 1 3.6656 -2.0412 1.3931 35 1 2.1806 -2.7722 0.7131 36 1 2.8462 -1.8939 3.2653 37 1 1.0043 -0.7191 5.0555 38 1 2.4818 0.2734 5.0389 39 1 4.7531 -2.4465 6.1804 40 1 4.4455 -2.0168 4.4805 41 1 4.6713 -0.7360 5.6958 42 1 1.1189 -3.1201 5.7353 43 1 2.3710 -3.4090 4.5036 44 1 2.6782 -3.8390 6.2035 45 1 1.4365 -1.3216 7.4415 46 1 2.9146 -0.3302 7.4244 47 1 1.9860 -0.5115 9.4437 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000513112729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:57 Heat of formation + Delta-G solvation = -58.657992 kcal Electronic energy + Delta-G solvation = -23236.431923 eV Core-core repulsion = 20032.054206 eV Total energy + Delta-G solvation = -3204.377717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44927 -38.36446 -36.96688 -33.82603 -33.14471 -32.40164 -31.22253 -27.34785 -26.66981 -26.57064 -26.24309 -25.67981 -23.01995 -21.77712 -20.74999 -19.59924 -18.68834 -17.67827 -16.82988 -16.44661 -15.41814 -15.02080 -14.58707 -14.30033 -14.05061 -13.90115 -13.68546 -13.53090 -13.41773 -13.00991 -12.87983 -12.73286 -12.40767 -12.22425 -12.05788 -11.77975 -11.70630 -11.20586 -11.17394 -11.14175 -11.03708 -11.00695 -10.78443 -10.64178 -10.21921 -10.09343 -9.97513 -9.93229 -9.43624 -8.90728 -8.46134 -8.43671 -8.30224 -6.31543 -4.00569 2.68550 3.37887 3.44246 3.45838 3.64518 4.04668 4.13367 4.39255 4.49843 4.56568 4.91561 4.99748 5.06816 5.17037 5.24515 5.33475 5.40529 5.42610 5.43970 5.51212 5.56128 5.58542 5.63523 5.67535 5.71282 5.89825 5.98058 6.11579 6.12298 6.17709 6.20980 6.34928 6.36568 6.54601 6.57118 6.76952 6.99400 7.00442 7.04261 7.15357 7.37072 7.51855 8.13023 8.23866 8.48989 8.78558 8.91718 9.70427 11.08421 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030669 B = 0.003403 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.740354 B = 8225.387665 C = 8834.318038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.072 0.928 4 C -0.124 4.124 5 C -0.104 4.104 6 H 0.085 0.915 7 C -0.141 4.141 8 C 0.103 3.897 9 N -0.638 5.638 10 C 0.719 3.281 11 O -0.590 6.590 12 N -0.736 5.736 13 C 0.146 3.854 14 C -0.066 4.066 15 C -0.125 4.125 16 C -0.125 4.125 17 C 0.023 3.977 18 C -0.592 4.592 19 H 0.053 0.947 20 C 0.013 3.987 21 N -0.914 5.914 22 Si 1.066 2.934 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.283 1.283 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.393 0.607 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.028 0.972 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.028 0.972 44 H 0.068 0.932 45 H 0.009 0.991 46 H 0.009 0.991 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.703 -3.190 -24.293 24.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.090 0.910 4 C -0.162 4.162 5 C -0.124 4.124 6 H 0.103 0.897 7 C -0.199 4.199 8 C -0.021 4.021 9 N -0.377 5.377 10 C 0.421 3.579 11 O -0.468 6.468 12 N -0.391 5.391 13 C 0.023 3.977 14 C -0.066 4.066 15 C -0.182 4.182 16 C -0.182 4.182 17 C -0.014 4.014 18 C -0.630 4.630 19 H 0.071 0.929 20 C -0.190 4.190 21 N -0.551 5.551 22 Si 0.894 3.106 23 H -0.216 1.216 24 H -0.215 1.215 25 H -0.209 1.209 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.229 0.771 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.087 0.913 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.452 -2.788 -22.373 22.593 hybrid contribution -0.006 -0.024 -1.698 1.698 sum 1.446 -2.812 -24.071 24.278 Atomic orbital electron populations 1.22157 0.94937 1.02108 1.02896 1.21329 0.94425 0.95971 0.83317 0.90993 1.22830 0.97394 0.99460 0.96529 1.22325 0.98290 0.97666 0.94072 0.89677 1.21702 1.02025 0.96478 0.99672 1.22323 0.95154 0.89133 0.95450 1.47661 1.56473 1.29606 1.03948 1.15513 0.80224 0.82988 0.79224 1.90899 1.45009 1.28391 1.82537 1.45374 1.57154 1.30634 1.05949 1.21484 1.00240 0.98492 0.77510 1.20768 0.94670 0.94022 0.97149 1.21737 0.95836 1.02034 0.98595 1.21736 1.00685 0.97119 0.98658 1.19206 0.96504 0.96805 0.88888 1.21972 1.35868 1.12271 0.92864 0.92890 1.25783 0.96637 0.99546 0.97074 1.70769 1.31666 1.13518 1.39115 0.83585 0.75751 0.75003 0.76214 1.21553 1.21547 1.20888 0.90889 0.92021 0.92759 0.90093 0.90355 0.92274 0.92113 0.92149 0.91066 0.91563 0.77146 0.92125 0.92132 0.91322 0.95307 0.93464 0.93471 0.95269 0.91332 0.97275 0.97277 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.11 37.16 0.34 -1.44 16 2 C 0.15 1.65 3.46 -66.95 -0.23 1.42 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.12 -0.89 5.95 -24.89 -0.15 -1.04 16 5 C -0.10 -0.73 3.64 -88.47 -0.32 -1.06 16 6 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 7 C -0.14 -0.75 9.29 37.16 0.35 -0.41 16 8 C 0.10 0.95 6.04 -2.53 -0.02 0.93 16 9 N -0.64 -8.07 3.06 -168.68 -0.52 -8.59 16 10 C 0.72 11.98 8.28 -86.92 -0.72 11.26 16 11 O -0.59 -12.10 15.39 5.28 0.08 -12.02 16 12 N -0.74 -11.65 4.92 -65.23 -0.32 -11.97 16 13 C 0.15 2.72 4.56 -4.04 -0.02 2.71 16 14 C -0.07 -1.28 0.54 -154.51 -0.08 -1.37 16 15 C -0.12 -2.26 8.05 37.16 0.30 -1.96 16 16 C -0.12 -2.26 8.05 37.16 0.30 -1.96 16 17 C 0.02 0.58 3.35 -27.88 -0.09 0.49 16 18 C -0.59 -15.98 7.65 -34.44 -0.26 -16.24 16 19 H 0.05 1.39 5.68 -52.49 -0.30 1.09 16 20 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 21 N -0.91 -27.92 13.65 55.43 0.76 -27.16 16 22 Si 1.07 24.98 29.90 -169.99 -5.08 19.90 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 26 H 0.07 1.03 6.89 -51.93 -0.36 0.68 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.51 7.72 -51.93 -0.40 0.11 16 31 H 0.06 0.31 8.11 -51.93 -0.42 -0.11 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.63 7.30 -51.93 -0.38 0.25 16 35 H 0.07 0.57 8.04 -51.93 -0.42 0.16 16 36 H 0.39 5.38 4.64 -40.82 -0.19 5.19 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.34 6.61 -51.93 -0.34 0.99 16 40 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 44 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 45 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 46 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 47 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -32.24 359.80 -8.81 -41.04 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.44 Total: 1.77 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -0.71 Total: -8.39 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.08 Total: -47.72 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.24 -8.81 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513112729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.614 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds