Wall clock time and date at job start Tue Mar 31 2020 06:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.88141 * 2 1 4 4 C 1.55154 * 111.03901 * 123.90097 * 2 1 3 5 5 C 1.54325 * 102.94303 * 153.59308 * 4 2 1 6 6 H 1.08999 * 109.88411 * 218.39137 * 5 4 2 7 7 C 1.52998 * 109.88065 * 97.37930 * 5 4 2 8 8 N 1.47290 * 107.30599 * 337.81911 * 5 4 2 9 9 C 1.34774 * 125.79121 * 178.92556 * 8 5 4 10 10 O 1.21585 * 120.00157 * 0.02562 * 9 8 5 11 11 N 1.34777 * 119.99847 * 180.02562 * 9 8 5 12 12 C 1.46498 * 120.00001 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47201 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.46765 * 299.99918 * 13 12 11 15 15 C 1.53002 * 109.46886 * 59.99746 * 13 12 11 16 16 C 1.52997 * 109.47077 * 179.97438 * 13 12 11 17 17 C 1.50703 * 109.47096 * 179.97438 * 16 13 12 18 18 H 1.07998 * 119.99741 * 359.97438 * 17 16 13 19 19 C 1.37877 * 119.99982 * 180.02562 * 17 16 13 20 20 N 1.31508 * 120.00326 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99749 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47175 * 59.99935 * 21 19 17 23 23 H 1.48497 * 109.47163 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47165 * 300.00226 * 21 19 17 25 25 C 1.47425 * 108.55742 * 358.92448 * 8 5 4 26 26 H 1.09009 * 109.46588 * 182.42615 * 1 2 3 27 27 H 1.08994 * 109.47505 * 302.42805 * 1 2 3 28 28 H 1.09001 * 109.47019 * 62.43298 * 1 2 3 29 29 H 1.09002 * 110.72290 * 271.95994 * 4 2 1 30 30 H 1.08997 * 110.72022 * 35.22766 * 4 2 1 31 31 H 1.09005 * 109.47358 * 60.00288 * 7 5 4 32 32 H 1.09002 * 109.47151 * 179.97438 * 7 5 4 33 33 H 1.08998 * 109.47688 * 300.00331 * 7 5 4 34 34 H 0.96998 * 120.00145 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.47105 * 299.99208 * 12 11 9 36 36 H 1.08998 * 109.47143 * 59.99517 * 12 11 9 37 37 H 1.08999 * 109.47520 * 60.00350 * 14 13 12 38 38 H 1.09006 * 109.46513 * 180.02562 * 14 13 12 39 39 H 1.09000 * 109.47162 * 299.99136 * 14 13 12 40 40 H 1.08998 * 109.47365 * 60.00429 * 15 13 12 41 41 H 1.08999 * 109.46455 * 180.02562 * 15 13 12 42 42 H 1.09003 * 109.47123 * 300.00055 * 15 13 12 43 43 H 1.08998 * 109.47447 * 299.99738 * 16 13 12 44 44 H 1.08998 * 109.46924 * 60.00122 * 16 13 12 45 45 H 0.96999 * 120.00611 * 179.97438 * 20 19 17 46 46 H 1.09002 * 110.36696 * 265.26054 * 25 8 5 47 47 H 1.08995 * 110.36608 * 143.04891 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0870 -0.8077 1.2019 5 6 3.4684 -1.2731 0.6952 6 1 3.6667 -2.2883 1.0391 7 6 4.5565 -0.3281 1.2089 8 7 3.4284 -1.2419 -0.7768 9 6 4.4477 -1.5582 -1.5999 10 8 5.5167 -1.9071 -1.1374 11 7 4.2820 -1.4879 -2.9356 12 6 5.3897 -1.8323 -3.8302 13 6 4.9406 -1.6701 -5.2839 14 6 3.7559 -2.5985 -5.5582 15 6 4.5193 -0.2197 -5.5286 16 6 6.0977 -2.0292 -6.2182 17 6 5.6552 -1.8700 -7.6500 18 1 4.6492 -1.5456 -7.8713 19 6 6.5344 -2.1395 -8.6773 20 7 7.7590 -2.5360 -8.4078 21 14 5.9860 -1.9415 -10.4520 22 1 5.5772 -0.5337 -10.6897 23 1 7.1086 -2.2913 -11.3589 24 1 4.8360 -2.8425 -10.7182 25 6 2.0853 -0.8061 -1.2006 26 1 -0.3633 -1.0269 0.0435 27 1 -0.3634 0.5510 0.8673 28 1 -0.3633 0.4756 -0.9110 29 1 2.1929 -0.1698 2.0794 30 1 1.4482 -1.6633 1.4208 31 1 4.5541 -0.3296 2.2990 32 1 5.5288 -0.6630 0.8477 33 1 4.3619 0.6813 0.8466 34 1 3.4291 -1.2099 -3.3045 35 1 6.2339 -1.1711 -3.6345 36 1 5.6896 -2.8657 -3.6561 37 1 2.9317 -2.3423 -4.8926 38 1 3.4363 -2.4832 -6.5939 39 1 4.0561 -3.6318 -5.3839 40 1 5.3634 0.4418 -5.3332 41 1 4.1990 -0.1043 -6.5640 42 1 3.6951 0.0365 -4.8629 43 1 6.9415 -1.3674 -6.0227 44 1 6.3982 -3.0623 -6.0439 45 1 8.3774 -2.7260 -9.1306 46 1 1.4523 -1.6702 -1.4026 47 1 2.1536 -0.1719 -2.0844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000513112730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:59 Heat of formation + Delta-G solvation = -73.154603 kcal Electronic energy + Delta-G solvation = -23210.856830 eV Core-core repulsion = 20005.850493 eV Total energy + Delta-G solvation = -3205.006337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51408 -39.49410 -38.31906 -35.30141 -34.14680 -33.71589 -32.30899 -29.08233 -27.98284 -27.97749 -27.36919 -26.63239 -24.91397 -23.01307 -21.23079 -20.85845 -19.81405 -18.76277 -18.35347 -17.31115 -16.92193 -16.50669 -16.18097 -15.70970 -15.36554 -14.96820 -14.67552 -14.43995 -14.34716 -14.23701 -13.98011 -13.93828 -13.58176 -13.34070 -13.19555 -12.85852 -12.78919 -12.74113 -12.59316 -12.47368 -12.33713 -12.22244 -12.00489 -11.77531 -11.57090 -11.54748 -11.39160 -11.21960 -10.97160 -10.86410 -10.50136 -10.20887 -9.48988 -8.13084 -6.21387 1.43121 1.45598 1.52678 1.59969 2.13520 2.45025 3.03494 3.21194 3.55192 3.66609 3.96386 3.96961 4.07896 4.15700 4.21278 4.36359 4.44727 4.55159 4.60759 4.67933 4.71462 4.74095 4.77273 4.87401 4.93530 4.94785 4.96723 5.08256 5.09764 5.10958 5.17732 5.28235 5.37215 5.38174 5.46540 5.48606 5.49057 5.52878 5.55064 5.58875 5.79733 5.89917 6.07743 6.30964 6.93020 7.00345 7.46385 7.57014 8.99435 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031023 B = 0.003389 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.349195 B = 8258.839461 C = 8861.900933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.084 0.916 4 C -0.112 4.112 5 C 0.143 3.857 6 H 0.058 0.942 7 C -0.157 4.157 8 N -0.635 5.635 9 C 0.712 3.288 10 O -0.637 6.637 11 N -0.724 5.724 12 C 0.162 3.838 13 C -0.064 4.064 14 C -0.119 4.119 15 C -0.119 4.119 16 C 0.041 3.959 17 C -0.515 4.515 18 H 0.074 0.926 19 C -0.005 4.005 20 N -0.939 5.939 21 Si 0.960 3.040 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.266 1.266 25 C 0.093 3.907 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.033 0.967 33 H 0.056 0.944 34 H 0.407 0.593 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.066 0.934 43 H -0.015 1.015 44 H -0.015 1.015 45 H 0.260 0.740 46 H 0.079 0.921 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.010 6.599 18.386 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.103 0.897 4 C -0.150 4.150 5 C 0.039 3.961 6 H 0.076 0.924 7 C -0.215 4.215 8 N -0.373 5.373 9 C 0.413 3.587 10 O -0.519 6.519 11 N -0.380 5.380 12 C 0.037 3.963 13 C -0.064 4.064 14 C -0.176 4.176 15 C -0.176 4.176 16 C 0.004 3.996 17 C -0.553 4.553 18 H 0.092 0.908 19 C -0.202 4.202 20 N -0.581 5.581 21 Si 0.785 3.215 22 H -0.191 1.191 23 H -0.218 1.218 24 H -0.191 1.191 25 C -0.029 4.029 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.245 0.755 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.004 0.996 44 H 0.004 0.996 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.023 6.272 18.573 26.629 hybrid contribution 0.607 -0.189 -1.347 1.489 sum -17.416 6.083 17.226 25.240 Atomic orbital electron populations 1.21680 0.91986 1.02787 1.02963 1.22302 0.97248 0.98877 0.93002 0.89730 1.22798 0.92655 1.00969 0.98574 1.21620 0.97496 0.99049 0.77891 0.92393 1.22101 0.98370 0.99155 1.01909 1.47779 1.11963 1.70832 1.06678 1.15707 0.83060 0.78428 0.81458 1.90865 1.27660 1.56900 1.76458 1.45057 1.16874 1.72705 1.03402 1.21060 0.88026 0.98670 0.88540 1.20716 0.97221 0.97181 0.91313 1.21670 0.96299 0.97846 1.01823 1.21670 1.00120 0.93980 1.01859 1.18952 0.92502 0.94165 0.94015 1.21561 0.98530 1.43777 0.91411 0.90797 1.25965 0.94989 0.95367 1.03892 1.70119 1.06559 1.47832 1.33549 0.85578 0.77685 0.79075 0.79173 1.19051 1.21757 1.19066 1.22656 0.82145 0.99042 0.99089 0.91893 0.91052 0.91781 0.88039 0.89222 0.89580 0.94776 0.92486 0.75550 0.94057 0.94044 0.91507 0.92296 0.94515 0.94511 0.92289 0.91542 0.99630 0.99636 0.93160 0.90310 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.30 71.98 0.67 -0.24 16 2 C -0.10 -1.01 3.64 -9.40 -0.03 -1.04 16 3 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 4 C -0.11 -1.24 5.96 31.78 0.19 -1.05 16 5 C 0.14 2.89 3.50 45.29 0.16 3.05 16 6 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 7 C -0.16 -3.36 9.06 71.98 0.65 -2.71 16 8 N -0.63 -15.31 3.09 -805.26 -2.49 -17.80 16 9 C 0.71 23.79 8.28 179.06 1.48 25.27 16 10 O -0.64 -27.28 15.28 -3.98 -0.06 -27.34 16 11 N -0.72 -22.36 4.92 -478.54 -2.35 -24.72 16 12 C 0.16 6.21 4.56 86.38 0.39 6.60 16 13 C -0.06 -2.49 0.54 -52.18 -0.03 -2.51 16 14 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 15 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 16 C 0.04 2.14 4.04 29.85 0.12 2.26 16 17 C -0.51 -27.80 7.65 25.60 0.20 -27.60 16 18 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 19 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 20 N -0.94 -57.74 13.29 21.45 0.28 -57.46 16 21 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 C 0.09 1.43 6.04 86.85 0.52 1.96 16 26 H 0.06 0.40 8.11 -2.38 -0.02 0.38 16 27 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.10 0.80 7.83 -2.39 -0.02 0.78 16 30 H 0.09 0.81 8.02 -2.39 -0.02 0.79 16 31 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.03 1.00 6.79 -2.39 -0.02 0.99 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.41 10.03 4.64 -92.71 -0.43 9.60 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 38 H 0.06 2.13 6.62 -2.38 -0.02 2.12 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 2.13 6.62 -2.39 -0.02 2.12 16 42 H 0.07 1.75 6.86 -2.39 -0.02 1.74 16 43 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 44 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 45 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 46 H 0.08 1.07 8.04 -2.39 -0.02 1.05 16 47 H 0.08 1.11 7.29 -2.39 -0.02 1.09 16 Total: -1.00 -72.35 360.91 3.85 -68.50 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.50 Total: 16.00 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.95 Total: -2.89 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -4.56 Total: -99.97 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.06 Total: -27.34 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -72.35 3.85 -68.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513112730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.657 kcal (2) G-P(sol) polarization free energy of solvation -72.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds