Wall clock time and date at job start Tue Mar 31 2020 06:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.88352 * 2 1 4 4 C 1.55153 * 111.00844 * 236.11738 * 2 1 3 5 5 C 1.54323 * 103.10236 * 206.29737 * 4 2 1 6 6 H 1.09000 * 109.88693 * 141.69901 * 5 4 2 7 7 C 1.53005 * 109.88160 * 262.86369 * 5 4 2 8 8 N 1.47486 * 107.03754 * 22.24109 * 5 4 2 9 9 C 1.34774 * 125.59714 * 180.99239 * 8 5 4 10 10 O 1.21591 * 119.99646 * 0.02562 * 9 8 5 11 11 N 1.34770 * 120.00234 * 180.02562 * 9 8 5 12 12 C 1.46502 * 119.99965 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47213 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47135 * 300.00285 * 13 12 11 15 15 C 1.53001 * 109.46922 * 59.99960 * 13 12 11 16 16 C 1.52996 * 109.47235 * 179.97438 * 13 12 11 17 17 C 1.50697 * 109.47280 * 180.02562 * 16 13 12 18 18 H 1.07996 * 119.99902 * 0.02562 * 17 16 13 19 19 C 1.37882 * 120.00017 * 180.02562 * 17 16 13 20 20 N 1.31509 * 120.00209 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99555 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46979 * 90.00139 * 21 19 17 23 23 H 1.48503 * 109.46998 * 209.99407 * 21 19 17 24 24 H 1.48489 * 109.47639 * 329.99929 * 21 19 17 25 25 C 1.47428 * 108.75727 * 1.02624 * 8 5 4 26 26 H 1.09007 * 109.46864 * 183.87809 * 1 2 3 27 27 H 1.08997 * 109.47507 * 303.88140 * 1 2 3 28 28 H 1.09000 * 109.46765 * 63.88859 * 1 2 3 29 29 H 1.09002 * 110.72030 * 324.75004 * 4 2 1 30 30 H 1.09003 * 110.72184 * 87.84655 * 4 2 1 31 31 H 1.08999 * 109.47076 * 60.00169 * 7 5 4 32 32 H 1.09005 * 109.46826 * 179.97438 * 7 5 4 33 33 H 1.08995 * 109.47029 * 299.99589 * 7 5 4 34 34 H 0.96997 * 120.00150 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.47201 * 299.99886 * 12 11 9 36 36 H 1.09002 * 109.47231 * 60.00204 * 12 11 9 37 37 H 1.08999 * 109.47349 * 59.99285 * 14 13 12 38 38 H 1.09002 * 109.47388 * 180.02562 * 14 13 12 39 39 H 1.09005 * 109.46702 * 299.99478 * 14 13 12 40 40 H 1.08998 * 109.47045 * 60.00145 * 15 13 12 41 41 H 1.09001 * 109.47156 * 180.02562 * 15 13 12 42 42 H 1.08999 * 109.46790 * 300.00242 * 15 13 12 43 43 H 1.08998 * 109.47435 * 300.00285 * 16 13 12 44 44 H 1.09008 * 109.46762 * 59.99919 * 16 13 12 45 45 H 0.96995 * 120.00138 * 180.02562 * 20 19 17 46 46 H 1.09000 * 110.36462 * 217.05803 * 25 8 5 47 47 H 1.08996 * 110.46287 * 94.77884 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0862 -0.8075 -1.2024 5 6 3.4696 -1.2730 -0.7013 6 1 3.6675 -2.2873 -1.0480 7 6 4.5550 -0.3240 -1.2133 8 7 3.4281 -1.2421 0.7727 9 6 4.4489 -1.5605 1.5931 10 8 5.5168 -1.9088 1.1277 11 7 4.2859 -1.4927 2.9292 12 6 5.3954 -1.8393 3.8209 13 6 4.9497 -1.6786 5.2758 14 6 4.5303 -0.2282 5.5234 15 6 3.7647 -2.6063 5.5516 16 6 6.1082 -2.0412 6.2071 17 6 5.6691 -1.8835 7.6400 18 1 4.6641 -1.5577 7.8640 19 6 6.5504 -2.1552 8.6650 20 7 7.7740 -2.5524 8.3922 21 14 6.0062 -1.9590 10.4411 22 1 5.4329 -3.2397 10.9275 23 1 7.1754 -1.5902 11.2792 24 1 4.9779 -0.8914 10.5288 25 6 2.0861 -0.8065 1.2001 26 1 -0.3633 -1.0254 0.0695 27 1 -0.3634 0.5729 0.8531 28 1 -0.3633 0.4523 -0.9228 29 1 1.4473 -1.6631 -1.4211 30 1 2.1887 -0.1701 -2.0807 31 1 4.3597 0.6834 -0.8458 32 1 5.5286 -0.6586 -0.8553 33 1 4.5499 -0.3205 -2.3033 34 1 3.4341 -1.2145 3.3004 35 1 5.6944 -2.8725 3.6442 36 1 6.2395 -1.1781 3.6247 37 1 3.7049 0.0297 4.8599 38 1 4.2133 -0.1136 6.5600 39 1 5.3746 0.4327 5.3269 40 1 4.0635 -3.6396 5.3752 41 1 3.4469 -2.4915 6.5879 42 1 2.9393 -2.3484 4.8881 43 1 6.4066 -3.0746 6.0305 44 1 6.9527 -1.3806 6.0106 45 1 8.3938 -2.7439 9.1133 46 1 2.1567 -0.1718 2.0835 47 1 1.4521 -1.6695 1.4036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000513112731.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:02 Heat of formation + Delta-G solvation = -54.533754 kcal Electronic energy + Delta-G solvation = -23209.865645 eV Core-core repulsion = 20005.666769 eV Total energy + Delta-G solvation = -3204.198876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.38985 -38.30101 -36.85875 -33.66981 -33.03156 -32.27744 -31.21262 -27.29000 -27.03062 -26.49001 -26.15848 -25.68053 -23.09966 -21.89582 -20.55247 -19.60014 -18.45339 -17.43002 -16.47244 -16.23739 -15.70551 -15.05643 -14.53892 -14.42426 -13.95627 -13.79612 -13.70473 -13.54192 -13.05875 -12.96605 -12.76689 -12.59619 -12.45289 -12.20736 -12.04583 -11.94526 -11.83132 -11.15243 -11.12512 -10.99872 -10.93565 -10.83825 -10.71271 -10.61722 -10.37003 -10.23214 -9.86958 -9.84924 -9.17875 -8.90751 -8.84390 -8.37895 -8.34312 -5.98361 -3.99613 2.73246 3.31742 3.38734 3.40493 3.44026 4.09841 4.17517 4.42258 4.46834 4.56631 4.89023 5.06204 5.10089 5.21368 5.25544 5.37126 5.39359 5.49035 5.51831 5.53930 5.58147 5.65521 5.67728 5.76628 5.77943 5.94372 5.99529 6.15659 6.20288 6.26607 6.30152 6.42882 6.44502 6.63803 6.64932 6.85478 7.08861 7.09620 7.15606 7.21573 7.66495 7.79079 8.00470 8.19987 8.42477 8.85061 9.05233 9.63338 11.13152 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031032 B = 0.003389 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.073063 B = 8259.494758 C = 8862.041392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.125 4.125 5 C 0.154 3.846 6 H 0.072 0.928 7 C -0.163 4.163 8 N -0.638 5.638 9 C 0.718 3.282 10 O -0.590 6.590 11 N -0.736 5.736 12 C 0.147 3.853 13 C -0.072 4.072 14 C -0.125 4.125 15 C -0.125 4.125 16 C 0.037 3.963 17 C -0.511 4.511 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 C 0.103 3.897 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.393 0.607 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.027 0.973 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.071 0.929 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 5.363 -17.828 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.103 0.897 4 C -0.163 4.163 5 C 0.050 3.950 6 H 0.090 0.910 7 C -0.221 4.221 8 N -0.378 5.378 9 C 0.420 3.580 10 O -0.468 6.468 11 N -0.391 5.391 12 C 0.023 3.977 13 C -0.073 4.073 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.001 4.001 17 C -0.549 4.549 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.200 1.200 25 C -0.020 4.020 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.228 0.772 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.144 5.017 -18.001 23.436 hybrid contribution -0.593 0.202 1.281 1.426 sum -14.737 5.219 -16.720 22.891 Atomic orbital electron populations 1.21708 0.93744 1.02280 1.02177 1.22315 0.96029 0.99434 0.94467 0.89732 1.22805 0.95248 1.00207 0.98036 1.21397 0.95123 0.99550 0.78899 0.91009 1.22158 1.00413 0.99206 1.00310 1.47778 1.11606 1.72319 1.06105 1.15527 0.82772 0.78485 0.81207 1.90896 1.25460 1.54919 1.75548 1.45404 1.17259 1.72649 1.03805 1.21490 0.87524 1.00273 0.88375 1.20915 0.98647 0.95365 0.92364 1.21745 0.99240 0.95823 1.01459 1.21747 0.96123 0.98985 1.01422 1.19084 0.91330 0.96922 0.92759 1.21184 0.98094 1.44861 0.90773 0.92275 1.25013 0.94983 0.95527 0.98980 1.69963 1.05063 1.46200 1.32152 0.86651 0.78103 0.78315 0.85247 1.20786 1.21351 1.19958 1.22323 0.84031 0.98016 0.97653 0.92262 0.92195 0.92138 0.90574 0.89973 0.92774 0.90743 0.92114 0.77202 0.92036 0.92060 0.95447 0.91471 0.93370 0.93357 0.91490 0.95417 0.96314 0.96311 0.93045 0.91102 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.31 37.16 0.35 -0.42 16 2 C -0.10 -0.73 3.64 -88.47 -0.32 -1.06 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.12 -0.90 5.95 -24.90 -0.15 -1.05 16 5 C 0.15 1.66 3.52 -66.70 -0.23 1.43 16 6 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 7 C -0.16 -1.79 9.06 37.16 0.34 -1.45 16 8 N -0.64 -8.11 3.09 -168.34 -0.52 -8.63 16 9 C 0.72 11.99 8.28 -86.93 -0.72 11.27 16 10 O -0.59 -12.11 15.27 5.29 0.08 -12.03 16 11 N -0.74 -11.64 4.92 -65.22 -0.32 -11.96 16 12 C 0.15 2.73 4.56 -4.04 -0.02 2.71 16 13 C -0.07 -1.40 0.54 -154.51 -0.08 -1.49 16 14 C -0.13 -2.24 8.05 37.16 0.30 -1.95 16 15 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 16 C 0.04 0.91 4.04 -27.89 -0.11 0.80 16 17 C -0.51 -13.64 7.65 -34.44 -0.26 -13.90 16 18 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.10 0.95 6.05 -2.52 -0.02 0.94 16 26 H 0.06 0.31 8.07 -51.93 -0.42 -0.11 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.49 8.04 -51.93 -0.42 0.07 16 30 H 0.08 0.49 7.83 -51.93 -0.41 0.08 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.06 6.79 -51.93 -0.35 0.71 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.39 5.36 4.64 -40.82 -0.19 5.17 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 38 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 42 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.07 0.63 7.30 -51.93 -0.38 0.25 16 47 H 0.07 0.57 7.98 -51.93 -0.41 0.16 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -31.55 360.88 -8.83 -40.38 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -8.49 Total: 1.05 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -0.73 Total: -4.65 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.11 Total: -46.43 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.08 Total: -12.03 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.55 -8.83 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513112731.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.153 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds