Wall clock time and date at job start Tue Mar 31 2020 06:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47229 * 2 1 4 4 N 1.46493 * 109.46878 * 119.99913 * 2 1 3 5 5 C 1.46498 * 120.00127 * 299.99864 * 4 2 1 6 6 C 1.50697 * 109.47354 * 270.00034 * 5 4 2 7 7 H 1.08009 * 119.99939 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00447 * 179.97438 * 6 5 4 9 9 N 1.31524 * 119.99800 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00536 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47169 * 60.00263 * 10 8 6 12 12 H 1.48497 * 109.47442 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47258 * 300.00282 * 10 8 6 14 14 C 1.34780 * 119.99761 * 120.00129 * 4 2 1 15 15 O 1.21283 * 119.99795 * 179.97438 * 14 4 2 16 16 C 1.50697 * 120.00131 * 359.97438 * 14 4 2 17 17 N 1.46903 * 109.47020 * 173.87603 * 16 14 4 18 18 C 1.48528 * 111.00168 * 305.75539 * 17 16 14 19 19 H 1.09003 * 110.66909 * 41.28911 * 18 17 16 20 20 C 1.52992 * 110.81170 * 278.21858 * 18 17 16 21 21 C 1.54947 * 103.22364 * 159.71958 * 18 17 16 22 22 C 1.54594 * 102.92175 * 322.58371 * 21 18 17 23 23 C 1.47904 * 110.99618 * 63.15345 * 17 16 14 24 24 H 1.08998 * 110.08060 * 333.59754 * 23 17 16 25 25 C 1.53002 * 109.91802 * 94.79994 * 23 17 16 26 26 H 1.08996 * 109.47316 * 300.00008 * 1 2 3 27 27 H 1.09008 * 109.47021 * 60.00227 * 1 2 3 28 28 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47198 * 240.00082 * 2 1 3 30 30 H 1.08996 * 109.47243 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46481 * 300.00049 * 3 2 1 32 32 H 1.08996 * 109.46978 * 59.99785 * 3 2 1 33 33 H 1.09000 * 109.46953 * 30.00012 * 5 4 2 34 34 H 1.09005 * 109.46842 * 150.00160 * 5 4 2 35 35 H 0.96998 * 119.99951 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.46750 * 53.88328 * 16 14 4 37 37 H 1.08994 * 109.47378 * 293.87991 * 16 14 4 38 38 H 1.09004 * 109.47378 * 306.04612 * 20 18 17 39 39 H 1.09005 * 109.46996 * 66.04681 * 20 18 17 40 40 H 1.08998 * 109.47409 * 186.04401 * 20 18 17 41 41 H 1.09004 * 110.71701 * 204.22827 * 21 18 17 42 42 H 1.08996 * 110.87672 * 81.01532 * 21 18 17 43 43 H 1.08996 * 110.30788 * 263.04176 * 22 21 18 44 44 H 1.08993 * 110.39066 * 140.91742 * 22 21 18 45 45 H 1.09003 * 109.47030 * 179.04163 * 25 23 17 46 46 H 1.08999 * 109.46687 * 59.04511 * 25 23 17 47 47 H 1.08994 * 109.47380 * 299.04135 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1961 5 6 1.6643 -0.1900 2.5267 6 6 2.7031 0.8018 2.9830 7 1 3.5427 1.0363 2.3454 8 6 2.5811 1.4108 4.2139 9 7 1.5583 1.1257 4.9902 10 14 3.8682 2.6409 4.7792 11 1 3.9234 3.7749 3.8219 12 1 3.5095 3.1481 6.1280 13 1 5.1953 1.9772 4.8373 14 6 2.7931 -1.7864 1.0725 15 8 3.1977 -2.3579 2.0628 16 6 3.1567 -2.3016 -0.2962 17 7 4.1179 -3.4047 -0.1648 18 6 5.2968 -2.9908 0.6383 19 1 4.9879 -2.3890 1.4931 20 6 6.3006 -2.2243 -0.2250 21 6 5.8972 -4.3398 1.1078 22 6 4.6422 -5.1992 1.3845 23 6 3.5180 -4.5469 0.5586 24 1 2.7263 -4.1963 1.2207 25 6 2.9519 -5.5576 -0.4409 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 0.6904 0.2975 2.4843 34 1 1.6237 -1.0226 3.2291 35 1 1.4723 1.5544 5.8560 36 1 3.6045 -1.4973 -0.8800 37 1 2.2590 -2.6599 -0.7999 38 1 6.5570 -2.8209 -1.1005 39 1 5.8586 -1.2807 -0.5451 40 1 7.2015 -2.0251 0.3554 41 1 6.4814 -4.2058 2.0183 42 1 6.5062 -4.7881 0.3229 43 1 4.3943 -5.1760 2.4457 44 1 4.8053 -6.2259 1.0571 45 1 2.5271 -6.4037 0.0992 46 1 3.7504 -5.9079 -1.0950 47 1 2.1750 -5.0812 -1.0388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530817469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:02 Heat of formation + Delta-G solvation = -34.292027 kcal Electronic energy + Delta-G solvation = -24480.777857 eV Core-core repulsion = 21277.456728 eV Total energy + Delta-G solvation = -3203.321129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.21524 -38.04744 -35.82497 -32.91859 -32.34564 -31.99272 -30.84388 -28.34632 -27.71852 -26.75630 -25.40226 -23.63468 -22.66979 -21.31451 -20.21927 -19.89140 -17.92584 -16.72772 -16.46375 -15.83291 -15.13015 -14.78161 -14.71313 -14.39427 -13.95824 -13.49165 -13.37475 -13.23929 -12.91748 -12.55842 -12.43184 -12.30930 -11.89457 -11.81519 -11.74299 -11.59652 -11.50823 -11.19277 -11.13525 -10.92442 -10.86627 -10.73177 -10.59264 -10.46242 -10.37283 -10.34610 -10.11146 -9.90343 -9.59368 -9.45877 -8.42828 -7.79292 -7.62918 -6.04347 -4.07773 3.29897 3.33186 3.35017 3.40090 3.93909 4.18515 4.43906 4.87496 4.99474 5.08463 5.23591 5.29754 5.35398 5.43882 5.49714 5.57495 5.64994 5.69615 5.70680 5.72853 5.83825 5.85677 5.93370 5.99971 6.00475 6.13876 6.16251 6.17917 6.25140 6.28842 6.35341 6.35609 6.41620 6.58171 6.60523 6.67583 6.94254 7.08115 7.21736 7.30605 7.46106 7.56381 7.92145 8.24742 8.43551 8.89649 9.07063 9.56346 11.03708 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.006029 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.507535 B = 4642.960507 C = 5323.392199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 C -0.156 4.156 4 N -0.590 5.590 5 C 0.246 3.754 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.474 3.526 15 O -0.537 6.537 16 C 0.023 3.977 17 N -0.489 5.489 18 C 0.039 3.961 19 H 0.097 0.903 20 C -0.134 4.134 21 C -0.112 4.112 22 C -0.117 4.117 23 C 0.057 3.943 24 H 0.073 0.927 25 C -0.133 4.133 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.263 0.737 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 -7.388 -12.929 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.028 3.972 3 C -0.214 4.214 4 N -0.322 5.322 5 C 0.126 3.874 6 C -0.557 4.557 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.261 3.739 15 O -0.416 6.416 16 C -0.109 4.109 17 N -0.213 5.213 18 C -0.068 4.068 19 H 0.115 0.885 20 C -0.191 4.191 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.051 4.051 24 H 0.091 0.909 25 C -0.191 4.191 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.678 -7.784 -12.753 15.179 hybrid contribution 0.317 1.172 1.178 1.691 sum 2.995 -6.612 -11.575 13.663 Atomic orbital electron populations 1.22151 0.95577 1.01742 1.02459 1.21005 0.94120 0.94170 0.87951 1.22133 1.01304 0.95691 1.02311 1.48485 1.48692 1.26375 1.08603 1.19210 0.95832 0.94891 0.77427 1.21374 1.08846 1.23415 1.02030 0.92546 1.24920 0.95713 0.97110 0.96372 1.69923 1.29502 1.43340 1.10731 0.86627 0.82070 0.81339 0.77799 1.20269 1.21247 1.20291 1.21491 0.79334 0.81223 0.91895 1.90606 1.52937 1.58120 1.39951 1.22406 0.97697 0.95600 0.95242 1.65041 1.05558 1.04786 1.45876 1.23189 0.90321 0.96797 0.96536 0.88499 1.21673 0.98190 0.99634 0.99645 1.22396 0.96977 0.95217 1.00415 1.22305 0.94742 0.98389 1.00110 1.22402 0.97373 0.91219 0.94091 0.90933 1.21780 1.00409 0.97970 0.98959 0.91337 0.92239 0.92978 0.90724 0.92809 0.93242 0.90094 0.94957 0.94251 0.92759 0.88584 0.88797 0.92533 0.93162 0.92611 0.91656 0.91727 0.91494 0.91926 0.92894 0.92493 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.17 37.16 0.34 -1.99 16 2 C 0.13 2.11 3.15 -67.93 -0.21 1.90 16 3 C -0.16 -2.55 8.47 37.16 0.31 -2.24 16 4 N -0.59 -12.02 2.39 -167.47 -0.40 -12.42 16 5 C 0.25 6.23 4.59 -5.20 -0.02 6.21 16 6 C -0.52 -14.19 7.83 -34.44 -0.27 -14.46 16 7 H 0.06 1.55 7.63 -52.48 -0.40 1.15 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 10 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.47 9.49 6.57 -10.99 -0.07 9.42 16 15 O -0.54 -12.64 11.37 5.55 0.06 -12.58 16 16 C 0.02 0.35 4.21 -4.98 -0.02 0.33 16 17 N -0.49 -7.52 4.87 -216.22 -1.05 -8.57 16 18 C 0.04 0.63 2.50 -65.79 -0.16 0.47 16 19 H 0.10 1.98 5.06 -51.93 -0.26 1.72 16 20 C -0.13 -1.86 9.47 37.15 0.35 -1.51 16 21 C -0.11 -1.60 6.50 -24.87 -0.16 -1.76 16 22 C -0.12 -1.69 6.57 -25.37 -0.17 -1.86 16 23 C 0.06 0.87 2.38 -66.64 -0.16 0.72 16 24 H 0.07 1.33 5.79 -51.93 -0.30 1.02 16 25 C -0.13 -1.64 9.32 37.16 0.35 -1.30 16 26 H 0.07 1.14 6.66 -51.93 -0.35 0.79 16 27 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.00 5.75 -51.93 -0.30 0.70 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 33 H 0.03 0.84 6.43 -51.93 -0.33 0.50 16 34 H 0.04 1.15 7.42 -51.93 -0.39 0.76 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.10 1.37 7.02 -51.93 -0.36 1.00 16 37 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.71 7.74 -51.93 -0.40 0.31 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -30.42 357.01 -8.76 -39.19 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.47 Total: 2.39 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 0.00 Total: -4.47 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.72 Total: -46.62 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.06 Total: -12.58 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.42 -8.76 -39.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530817469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.894 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds